; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027601 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027601
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold6:37462415..37464002
RNA-Seq ExpressionSpg027601
SyntenySpg027601
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025725.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-2062.38Show/hide
Query:  MSMVATEEENQCPMSTSTRPSAFQKLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLQSSISSRMKRKFSVLINTEGSLKFLLPK
        +SM   EEENQCP ST  R SAF++LS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D+K++S +SSRMKRK SV INTEGSL  + P+
Subjt:  MSMVATEEENQCPMSTSTRPSAFQKLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLQSSISSRMKRKFSVLINTEGSLKFLLPK

Query:  F
        F
Subjt:  F

KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]3.7e-2061.39Show/hide
Query:  MSMVATEEENQCPMSTSTRPSAFQKLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLQSSISSRMKRKFSVLINTEGSLKFLLPK
        +SM   EEENQCPMST  R SAF++LS+STSKK R STS FDRLK+TNDQ +R+M + + K F E N D+K+ S + SRMKRK SV INTEGSL  + P+
Subjt:  MSMVATEEENQCPMSTSTRPSAFQKLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLQSSISSRMKRKFSVLINTEGSLKFLLPK

Query:  F
        F
Subjt:  F

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.2e-2061.39Show/hide
Query:  MSMVATEEENQCPMSTSTRPSAFQKLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLQSSISSRMKRKFSVLINTEGSLKFLLPK
        +SM   EEENQCP ST  R SAF++LS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D+K+ S + SRMKRK SV INTEGSL  + P+
Subjt:  MSMVATEEENQCPMSTSTRPSAFQKLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLQSSISSRMKRKFSVLINTEGSLKFLLPK

Query:  F
        F
Subjt:  F

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]6.2e-2061.39Show/hide
Query:  MSMVATEEENQCPMSTSTRPSAFQKLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLQSSISSRMKRKFSVLINTEGSLKFLLPK
        +SM   EEENQCP ST  R SAF++LS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D+K+ S + SRMKRK SV INTEGSL  + P+
Subjt:  MSMVATEEENQCPMSTSTRPSAFQKLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLQSSISSRMKRKFSVLINTEGSLKFLLPK

Query:  F
        F
Subjt:  F

KAA0057874.1 gag protease polyprotein [Cucumis melo var. makuwa]6.2e-2062.63Show/hide
Query:  MVATEEENQCPMSTSTRPSAFQKLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLQSSISSRMKRKFSVLINTEGSLKFLLPKF
        M   EEENQCP ST TR SAF++LS+STSKK R STS FDRLK+TNDQ +R+M  L+ K F E N D+K+ + +SSRMKRK SV INTEGSL  + P+F
Subjt:  MVATEEENQCPMSTSTRPSAFQKLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLQSSISSRMKRKFSVLINTEGSLKFLLPKF

TrEMBL top hitse value%identityAlignment
A0A5A7SMQ5 Retrotransposon gag protein6.1e-2162.38Show/hide
Query:  MSMVATEEENQCPMSTSTRPSAFQKLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLQSSISSRMKRKFSVLINTEGSLKFLLPK
        +SM   EEENQCP ST  R SAF++LS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D+K++S +SSRMKRK SV INTEGSL  + P+
Subjt:  MSMVATEEENQCPMSTSTRPSAFQKLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLQSSISSRMKRKFSVLINTEGSLKFLLPK

Query:  F
        F
Subjt:  F

A0A5A7SZJ7 Retrotransposon gag protein1.8e-2061.39Show/hide
Query:  MSMVATEEENQCPMSTSTRPSAFQKLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLQSSISSRMKRKFSVLINTEGSLKFLLPK
        +SM   EEENQCPMST  R SAF++LS+STSKK R STS FDRLK+TNDQ +R+M + + K F E N D+K+ S + SRMKRK SV INTEGSL  + P+
Subjt:  MSMVATEEENQCPMSTSTRPSAFQKLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLQSSISSRMKRKFSVLINTEGSLKFLLPK

Query:  F
        F
Subjt:  F

A0A5A7TQ06 Retrotransposon gag protein3.0e-2061.39Show/hide
Query:  MSMVATEEENQCPMSTSTRPSAFQKLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLQSSISSRMKRKFSVLINTEGSLKFLLPK
        +SM   EEENQCP ST  R SAF++LS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D+K+ S + SRMKRK SV INTEGSL  + P+
Subjt:  MSMVATEEENQCPMSTSTRPSAFQKLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLQSSISSRMKRKFSVLINTEGSLKFLLPK

Query:  F
        F
Subjt:  F

A0A5A7URU7 Gag protease polyprotein3.0e-2062.63Show/hide
Query:  MVATEEENQCPMSTSTRPSAFQKLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLQSSISSRMKRKFSVLINTEGSLKFLLPKF
        M   EEENQCP ST TR SAF++LS+STSKK R STS FDRLK+TNDQ +R+M  L+ K F E N D+K+ + +SSRMKRK SV INTEGSL  + P+F
Subjt:  MVATEEENQCPMSTSTRPSAFQKLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLQSSISSRMKRKFSVLINTEGSLKFLLPKF

A0A5D3BBF9 Gag protease polyprotein3.0e-2061.39Show/hide
Query:  MSMVATEEENQCPMSTSTRPSAFQKLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLQSSISSRMKRKFSVLINTEGSLKFLLPK
        +SM   EEENQCP ST  R SAF++LS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D+K+ S + SRMKRK SV INTEGSL  + P+
Subjt:  MSMVATEEENQCPMSTSTRPSAFQKLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLQSSISSRMKRKFSVLINTEGSLKFLLPK

Query:  F
        F
Subjt:  F

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGTCGCGACAGAAGAAGAAAATCAGTGTCCGATGTCCACATCCACTCGACCTTCAGCTTTCCAAAAGCTAAGTGTTTCCACATCGAAGAAAAGTCGGTCTTC
AACATCTGTTTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGCGACGAGAAGCTTCAAA
GTAGCATCTCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGTTTCTTCTCCCCAAGTTCGAAGGTTCACACACTTCGCTGCAGTTT
CTTCTCTCAAGTTCGAAGTTCGAAGGTCCTATCGCTGCGTTGATTCCTTCTCCAAATTCAAAGGTTCTCATACTGCGCTGCTTCGCCGAATCCTTCACCAAGTTCGAAGG
TTCTCATGCTACGCTAGGCTGCGCTGCTGCGCTACTTCCTTCTTTAAGGTCGAAGGTTCCCACATTGCGCTGTTGTGCTGCTCCCTTCTCCAAGTTCGAAGGTTCTCACG
CTGCGTTGCTTCCTTCTCCAAATTCGAAGGTTCTCATACTGCGCTGCTACATTGCTTCCTTCTCCATTCGAAGGTTCTCAAGTGTTACGCTGTTTCGCTGTTGCTTCCTT
CTCATAGTTCGAAAGTTCACCCGCTGTTCTTATGCTACGCTGCTTTGCTGTTCCTTCTCCAAGTTTGAAGGTTCTGCTTTGCTGAAAGACGTGGCAGCAGTAATGGAGCC
CAAGTGGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGTCGCGACAGAAGAAGAAAATCAGTGTCCGATGTCCACATCCACTCGACCTTCAGCTTTCCAAAAGCTAAGTGTTTCCACATCGAAGAAAAGTCGGTCTTC
AACATCTGTTTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGCGACGAGAAGCTTCAAA
GTAGCATCTCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGTTTCTTCTCCCCAAGTTCGAAGGTTCACACACTTCGCTGCAGTTT
CTTCTCTCAAGTTCGAAGTTCGAAGGTCCTATCGCTGCGTTGATTCCTTCTCCAAATTCAAAGGTTCTCATACTGCGCTGCTTCGCCGAATCCTTCACCAAGTTCGAAGG
TTCTCATGCTACGCTAGGCTGCGCTGCTGCGCTACTTCCTTCTTTAAGGTCGAAGGTTCCCACATTGCGCTGTTGTGCTGCTCCCTTCTCCAAGTTCGAAGGTTCTCACG
CTGCGTTGCTTCCTTCTCCAAATTCGAAGGTTCTCATACTGCGCTGCTACATTGCTTCCTTCTCCATTCGAAGGTTCTCAAGTGTTACGCTGTTTCGCTGTTGCTTCCTT
CTCATAGTTCGAAAGTTCACCCGCTGTTCTTATGCTACGCTGCTTTGCTGTTCCTTCTCCAAGTTTGAAGGTTCTGCTTTGCTGAAAGACGTGGCAGCAGTAATGGAGCC
CAAGTGGGAATGA
Protein sequenceShow/hide protein sequence
MSMVATEEENQCPMSTSTRPSAFQKLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLQSSISSRMKRKFSVLINTEGSLKFLLPKFEGSHTSLQF
LLSSSKFEGPIAALIPSPNSKVLILRCFAESFTKFEGSHATLGCAAALLPSLRSKVPTLRCCAAPFSKFEGSHAALLPSPNSKVLILRCYIASFSIRRFSSVTLFRCCFL
LIVRKFTRCSYATLLCCSFSKFEGSALLKDVAAVMEPKWE