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Spg027619 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027619
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold6:37333673..37337439
RNA-Seq ExpressionSpg027619
SyntenySpg027619
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]2.6e-0736Show/hide
Query:  MNSDVSWFDSSGVGGIGWVVHDSNGSLIFFRIQKITSNWGIKILEAKAILEGIKE---ISQTCIQKKIPMEFESDAIAVIKALRDEEEDLTELKPIVEEI
        +NS  SW + +G GG+ WV+HDS GS I    +++   W +K+LE KA++EG+K    I +T      P+ F    + + + L +   DL EL  +V+EI
Subjt:  MNSDVSWFDSSGVGGIGWVVHDSNGSLIFFRIQKITSNWGIKILEAKAILEGIKE---ISQTCIQKKIPMEFESDAIAVIKALRDEEEDLTELKPIVEEI

XP_013694754.1 uncharacterized protein LOC106398790 [Brassica napus]2.0e-0727.2Show/hide
Query:  NSDVSWFDSSGVGGIGWVVHDSNGSLIFFRIQKITSNWGIKILEAKAILEGIKEISQTCIQKKIPMEFESDAIAVIKALRDEEEDLTELKPIVEEIHRIY
        N+D +W   + VGG+GWV+ D NG +++   +++     +   E +A+   I+ ++    +    + FESD+  +++ L +EEE    +KP+++ I    
Subjt:  NSDVSWFDSSGVGGIGWVVHDSNGSLIFFRIQKITSNWGIKILEAKAILEGIKEISQTCIQKKIPMEFESDAIAVIKALRDEEEDLTELKPIVEEIHRIY

Query:  SRLESAKFLYCNRHANTVAHWLARK
        S +E  +  Y  R  N +AH +A++
Subjt:  SRLESAKFLYCNRHANTVAHWLARK

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.2e-0933.33Show/hide
Query:  MNSDVSWFDSSGVGGIGWVVHDSNGSLIFFRIQKITSNWGIKILEAKAILEGIKEISQTCIQKKIPMEFESDAIAVIKALRDEEEDLTELKPIVEEIHRI
        +N++ +W   +  GGIGW++ D  G +I    + I +   I  LE  AI EG++ I Q   +   P+  ESD++  I  L  + +D TE+  ++EEI ++
Subjt:  MNSDVSWFDSSGVGGIGWVVHDSNGSLIFFRIQKITSNWGIKILEAKAILEGIKEISQTCIQKKIPMEFESDAIAVIKALRDEEEDLTELKPIVEEIHRI

Query:  YSRLESAKFLYCNRHANTVAHWLARK
           +E     + +R AN VAH LAR+
Subjt:  YSRLESAKFLYCNRHANTVAHWLARK

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.9e-1030.67Show/hide
Query:  MNSDVSWFDSSGVGGIGWVVHDSNGSLIFFRIQKITSNWGIKILEAKAILEGIKEISQTCIQKKIPMEFESDAIAVIKALRDEEEDLTELKPIVEEIHRI
        +N+D SW DS+  GGIGW++   +G ++    + + +   +K+LEA AILEG++ ++   + +  P+  E+D+  V   L  + EDLT+   +VEEI  +
Subjt:  MNSDVSWFDSSGVGGIGWVVHDSNGSLIFFRIQKITSNWGIKILEAKAILEGIKEISQTCIQKKIPMEFESDAIAVIKALRDEEEDLTELKPIVEEIHRI

Query:  YSRLESAKFLYCNRHANTVAHWLARKVCAANYLNLADSNSICRLTLFRNW
            E   F    R  N  AH LA++             S+  +  F NW
Subjt:  YSRLESAKFLYCNRHANTVAHWLARKVCAANYLNLADSNSICRLTLFRNW

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]8.0e-0934.35Show/hide
Query:  MNSDVSWFDSSGVGGIGWVVHDSNGSLIFFRIQKITSNWGIKILEAKAILEGIKEISQT-C--IQKK--IPMEFESDAIAVIKALRDEEEDLTELKPIVE
        +N+D +W   +  GGIGW++ D  G +I    + I +   I  LE  AI EG++ I Q  C  IQ++   P+  ESD++  I  L  + +D TE+  ++E
Subjt:  MNSDVSWFDSSGVGGIGWVVHDSNGSLIFFRIQKITSNWGIKILEAKAILEGIKEISQT-C--IQKK--IPMEFESDAIAVIKALRDEEEDLTELKPIVE

Query:  EIHRIYSRLESAKFLYCNRHANTVAHWLARK
        EI ++   ++     + +R AN VAH LAR+
Subjt:  EIHRIYSRLESAKFLYCNRHANTVAHWLARK

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134126.0e-1033.33Show/hide
Query:  MNSDVSWFDSSGVGGIGWVVHDSNGSLIFFRIQKITSNWGIKILEAKAILEGIKEISQTCIQKKIPMEFESDAIAVIKALRDEEEDLTELKPIVEEIHRI
        +N++ +W   +  GGIGW++ D  G +I    + I +   I  LE  AI EG++ I Q   +   P+  ESD++  I  L  + +D TE+  ++EEI ++
Subjt:  MNSDVSWFDSSGVGGIGWVVHDSNGSLIFFRIQKITSNWGIKILEAKAILEGIKEISQTCIQKKIPMEFESDAIAVIKALRDEEEDLTELKPIVEEIHRI

Query:  YSRLESAKFLYCNRHANTVAHWLARK
           +E     + +R AN VAH LAR+
Subjt:  YSRLESAKFLYCNRHANTVAHWLARK

A0A6J1D4B6 uncharacterized protein LOC1110171811.4e-0631.78Show/hide
Query:  MNSDVSWFDSSGVGGIGWVVHDSNGSLIFFRIQKITSNWGIKILEAKAILEGIKEISQT-CIQKKIPMEFESDAIAVIKALRDEEEDLTELKPIVEEIHR
        +N D +W DS   GG+GW+V DS G  I                    + E +K +SQ+  ++  I +E ESD + V+  +      LTE+  IVE+I +
Subjt:  MNSDVSWFDSSGVGGIGWVVHDSNGSLIFFRIQKITSNWGIKILEAKAILEGIKEISQT-CIQKKIPMEFESDAIAVIKALRDEEEDLTELKPIVEEIHR

Query:  IYSRLESAKFLYCNRHANTVAHWLARKVC
            L    F +    AN VAH +AR+ C
Subjt:  IYSRLESAKFLYCNRHANTVAHWLARKVC

A0A6J1DNV9 uncharacterized protein LOC1110224039.2e-1130.67Show/hide
Query:  MNSDVSWFDSSGVGGIGWVVHDSNGSLIFFRIQKITSNWGIKILEAKAILEGIKEISQTCIQKKIPMEFESDAIAVIKALRDEEEDLTELKPIVEEIHRI
        +N+D SW DS+  GGIGW++   +G ++    + + +   +K+LEA AILEG++ ++   + +  P+  E+D+  V   L  + EDLT+   +VEEI  +
Subjt:  MNSDVSWFDSSGVGGIGWVVHDSNGSLIFFRIQKITSNWGIKILEAKAILEGIKEISQTCIQKKIPMEFESDAIAVIKALRDEEEDLTELKPIVEEIHRI

Query:  YSRLESAKFLYCNRHANTVAHWLARKVCAANYLNLADSNSICRLTLFRNW
            E   F    R  N  AH LA++             S+  +  F NW
Subjt:  YSRLESAKFLYCNRHANTVAHWLARKVCAANYLNLADSNSICRLTLFRNW

A0A6J1DSV1 uncharacterized protein LOC1110236083.9e-0934.35Show/hide
Query:  MNSDVSWFDSSGVGGIGWVVHDSNGSLIFFRIQKITSNWGIKILEAKAILEGIKEISQT-C--IQKK--IPMEFESDAIAVIKALRDEEEDLTELKPIVE
        +N+D +W   +  GGIGW++ D  G +I    + I +   I  LE  AI EG++ I Q  C  IQ++   P+  ESD++  I  L  + +D TE+  ++E
Subjt:  MNSDVSWFDSSGVGGIGWVVHDSNGSLIFFRIQKITSNWGIKILEAKAILEGIKEISQT-C--IQKK--IPMEFESDAIAVIKALRDEEEDLTELKPIVE

Query:  EIHRIYSRLESAKFLYCNRHANTVAHWLARK
        EI ++   ++     + +R AN VAH LAR+
Subjt:  EIHRIYSRLESAKFLYCNRHANTVAHWLARK

A0A7N2MMY4 RNase H domain-containing protein1.1e-0634.4Show/hide
Query:  NSDVSWFDSSGVGGIGWVVHDSNGSLIFFRIQKITSNWGIKILEAKAILEGIKEISQTCIQKKIPMEFESDAIAVIKALRDEEEDLTELKPIVEEIHRIY
        N D ++FDSSG+ GIG VV DS+G+++    QKI+    ++  EA A    +  + +  + +     FE D   VI+A+     + T    I+EEI    
Subjt:  NSDVSWFDSSGVGGIGWVVHDSNGSLIFFRIQKITSNWGIKILEAKAILEGIKEISQTCIQKKIPMEFESDAIAVIKALRDEEEDLTELKPIVEEIHRIY

Query:  SRLESAKFLYCNRHANTVAHWLARK
        S L S  F++  R  N +AH LAR+
Subjt:  SRLESAKFLYCNRHANTVAHWLARK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTCAGACGTCTCTTGGTTCGATAGCTCGGGTGTTGGTGGGATAGGATGGGTTGTGCATGACTCGAATGGGTCCCTAATTTTTTTTAGAATTCAAAAGATCACGAG
TAATTGGGGCATTAAGATTTTGGAGGCTAAAGCAATTCTTGAAGGAATCAAAGAAATTAGCCAAACTTGTATTCAGAAGAAGATCCCCATGGAATTCGAATCGGATGCCA
TCGCAGTGATCAAAGCGCTGAGAGATGAAGAAGAAGATCTTACAGAGCTGAAGCCGATTGTTGAAGAAATCCATCGCATCTATTCGAGGCTGGAGTCGGCTAAATTTTTG
TATTGTAACCGCCATGCTAACACAGTAGCCCATTGGTTGGCAAGGAAGGTATGTGCTGCTAACTACCTCAACTTGGCTGACAGTAATAGTATCTGCCGGTTGACACTCTT
CAGGAACTGGTCAAACAACCCGATAAACATAGTCCTTTCAGAAGATAGAGATGTTTTTTGGATGGTAAATGGTTTTCAAAATGACACGTACAGGGATTGTTGTGTAGTTG
CGGACGCCAAGGGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAACTCAGACGTCTCTTGGTTCGATAGCTCGGGTGTTGGTGGGATAGGATGGGTTGTGCATGACTCGAATGGGTCCCTAATTTTTTTTAGAATTCAAAAGATCACGAG
TAATTGGGGCATTAAGATTTTGGAGGCTAAAGCAATTCTTGAAGGAATCAAAGAAATTAGCCAAACTTGTATTCAGAAGAAGATCCCCATGGAATTCGAATCGGATGCCA
TCGCAGTGATCAAAGCGCTGAGAGATGAAGAAGAAGATCTTACAGAGCTGAAGCCGATTGTTGAAGAAATCCATCGCATCTATTCGAGGCTGGAGTCGGCTAAATTTTTG
TATTGTAACCGCCATGCTAACACAGTAGCCCATTGGTTGGCAAGGAAGGTATGTGCTGCTAACTACCTCAACTTGGCTGACAGTAATAGTATCTGCCGGTTGACACTCTT
CAGGAACTGGTCAAACAACCCGATAAACATAGTCCTTTCAGAAGATAGAGATGTTTTTTGGATGGTAAATGGTTTTCAAAATGACACGTACAGGGATTGTTGTGTAGTTG
CGGACGCCAAGGGGTAG
Protein sequenceShow/hide protein sequence
MNSDVSWFDSSGVGGIGWVVHDSNGSLIFFRIQKITSNWGIKILEAKAILEGIKEISQTCIQKKIPMEFESDAIAVIKALRDEEEDLTELKPIVEEIHRIYSRLESAKFL
YCNRHANTVAHWLARKVCAANYLNLADSNSICRLTLFRNWSNNPINIVLSEDRDVFWMVNGFQNDTYRDCCVVADAKG