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Spg027643 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027643
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Genome locationscaffold6:38549229..38550106
RNA-Seq ExpressionSpg027643
SyntenySpg027643
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038876674.1 chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida]1.7e-0433.73Show/hide
Query:  VRGKMVSFSSVDINRVYKMKAPLHPRGSDAIKNPSAKQMKEALKLVANKGVQWKESQTKVKTLVPSDLKQESAGWLHFIKNRV
        ++ + VSFS+ DIN +Y+MK   +  G+  I +P+ +QM++AL+++   G++W  S   V TL    L  E   W++ +K R+
Subjt:  VRGKMVSFSSVDINRVYKMKAPLHPRGSDAIKNPSAKQMKEALKLVANKGVQWKESQTKVKTLVPSDLKQESAGWLHFIKNRV

XP_038885414.1 nucleolar protein 58-like [Benincasa hispida]8.2e-0434.18Show/hide
Query:  RGKMVSFSSVDINRVYKMKAPLHPRGSDAIKNPSAKQMKEALKLVANKGVQWKESQTKVKTLVPSDLKQESAGWLHFIK
        +G+ V FS+ DIN +Y+M+      GS  I +P  + M++ALK++A  G++W  S   ++TL    L  E   W++ +K
Subjt:  RGKMVSFSSVDINRVYKMKAPLHPRGSDAIKNPSAKQMKEALKLVANKGVQWKESQTKVKTLVPSDLKQESAGWLHFIK

XP_038888747.1 vicilin-like seed storage protein At2g18540 [Benincasa hispida]4.4e-0534.52Show/hide
Query:  VVRGKMVSFSSVDINRVYKMKAPLHPRGSDAIKNPSAKQMKEALKLVANKGVQWKESQTKVKTLVPSDLKQESAGWLHFIKNRV
        +++G  V FS+ DIN +YKMK  L   G+  I +P    M++ L+++   G QW  S   +KTL  + L  E+  W++ +K R+
Subjt:  VVRGKMVSFSSVDINRVYKMKAPLHPRGSDAIKNPSAKQMKEALKLVANKGVQWKESQTKVKTLVPSDLKQESAGWLHFIKNRV

XP_038904385.1 uncharacterized protein LOC120090747 [Benincasa hispida]6.7e-0635.71Show/hide
Query:  VVRGKMVSFSSVDINRVYKMKAPLHPRGSDAIKNPSAKQMKEALKLVANKGVQWKESQTKVKTLVPSDLKQESAGWLHFIKNRV
        +++G +V FS+ DIN +YKMK      G+  I +P  ++M++AL+ +   G QW  S   +KTL  S L  E+  W++ +K R+
Subjt:  VVRGKMVSFSSVDINRVYKMKAPLHPRGSDAIKNPSAKQMKEALKLVANKGVQWKESQTKVKTLVPSDLKQESAGWLHFIKNRV

TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGCAGTGGTGAGAGGCAAAATGGTTAGCTTCTCTTCTGTTGACATCAACAGGGTGTACAAAATGAAGGCACCCTTGCATCCAAGAGGGAGCGATGCCATTAA
GAATCCCTCGGCCAAACAAATGAAAGAAGCGCTGAAATTGGTGGCCAACAAGGGAGTTCAGTGGAAAGAGTCCCAGACTAAGGTGAAGACATTAGTGCCAAGCGACCTCA
AACAAGAATCGGCAGGGTGGCTTCACTTCATAAAGAACAGGGTAAAAATAGTTCCTGGTAAGGATGAGGAGCGTCACTTCTTCAAGCCTACCATCGACCTGTCCTTGATT
GGGAAGCTCCAACAGAACAATGCCCAAAGAAAGGACAAAGCTTCCACATCTCAAGCCACTCCACCATTAGGGCTAAATCCGGCTTCTCCACCTCAACACACTCCTTTCTC
AAGAGATGAAGCCATTATAGAGTTCTACCTCTTTATCGCCTCGAGTATTGCTCTTGTCTTTCCTGATTTCCCTCAATCGTTGCTGCCTCAAGAAGAAAAGGATTATGAAG
ATGAAGATGAAGATGAAGAAGATGAAAGAGAGAATTCCTCGGATGAGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGCAGTGGTGAGAGGCAAAATGGTTAGCTTCTCTTCTGTTGACATCAACAGGGTGTACAAAATGAAGGCACCCTTGCATCCAAGAGGGAGCGATGCCATTAA
GAATCCCTCGGCCAAACAAATGAAAGAAGCGCTGAAATTGGTGGCCAACAAGGGAGTTCAGTGGAAAGAGTCCCAGACTAAGGTGAAGACATTAGTGCCAAGCGACCTCA
AACAAGAATCGGCAGGGTGGCTTCACTTCATAAAGAACAGGGTAAAAATAGTTCCTGGTAAGGATGAGGAGCGTCACTTCTTCAAGCCTACCATCGACCTGTCCTTGATT
GGGAAGCTCCAACAGAACAATGCCCAAAGAAAGGACAAAGCTTCCACATCTCAAGCCACTCCACCATTAGGGCTAAATCCGGCTTCTCCACCTCAACACACTCCTTTCTC
AAGAGATGAAGCCATTATAGAGTTCTACCTCTTTATCGCCTCGAGTATTGCTCTTGTCTTTCCTGATTTCCCTCAATCGTTGCTGCCTCAAGAAGAAAAGGATTATGAAG
ATGAAGATGAAGATGAAGAAGATGAAAGAGAGAATTCCTCGGATGAGGACTAG
Protein sequenceShow/hide protein sequence
MSMAVVRGKMVSFSSVDINRVYKMKAPLHPRGSDAIKNPSAKQMKEALKLVANKGVQWKESQTKVKTLVPSDLKQESAGWLHFIKNRVKIVPGKDEERHFFKPTIDLSLI
GKLQQNNAQRKDKASTSQATPPLGLNPASPPQHTPFSRDEAIIEFYLFIASSIALVFPDFPQSLLPQEEKDYEDEDEDEEDERENSSDED