; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027647 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027647
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold6:38009824..38010635
RNA-Seq ExpressionSpg027647
SyntenySpg027647
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038314.1 retrotransposon protein [Cucumis melo var. makuwa]7.0e-2142.03Show/hide
Query:  FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYKCMEAEKDVFDAWIKVSHTQLR--KDSSTSHSLDLTFVFGK
        FR  YL +L  M+ EK+ GC +  T  IDC++K+LK+ + AIAEM GL CSGFGWN+E KC+ AEK++FD W++ SH  ++   +    +   LT+VFG+
Subjt:  FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYKCMEAEKDVFDAWIKVSHTQLR--KDSSTSHSLDLTFVFGK

Query:  DRATEGATQVPVHMASRAHVEEEGDVNMGASPRYYVPV
        DRAT+ +T+    + S     E    +MG     + PV
Subjt:  DRATEGATQVPVHMASRAHVEEEGDVNMGASPRYYVPV

KAA0050293.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-2136.93Show/hide
Query:  FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYKCMEAEKDVFDAWIKVSHTQLR--KDSSTSHSLDLTFVFGK
        FR  YL +L  M+ +K+ GC +  TT IDC++K+LK+ + AIAEM GL CSGFGWN+E KC+ AEK++FD W++ SH + +   +    +  +LT+VFG+
Subjt:  FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYKCMEAEKDVFDAWIKVSHTQLR--KDSSTSHSLDLTFVFGK

Query:  DRATEGATQVPVHMASRAHVEEEGDVNMGASPRYYVPVPLVFN--VAIEAESTRAHNPYQETECNRDITGDEEEEG
        DRAT    +    + S    +     +MG     +   PLV++  V I  +  RA  P + +E     +G + + G
Subjt:  DRATEGATQVPVHMASRAHVEEEGDVNMGASPRYYVPVPLVFN--VAIEAESTRAHNPYQETECNRDITGDEEEEG

KAA0067583.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-2137.36Show/hide
Query:  FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYKCMEAEKDVFDAWIKVSHTQLRK--DSSTSHSLDLTFVFGK
        FR  YL +L  M+ EK+ GC +  TT IDC++K+LK+ + AIAEM G  CSGFGWN+E KC+ AEK++FD W++ SH   ++  +   S+  +LT+VFG+
Subjt:  FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYKCMEAEKDVFDAWIKVSHTQLRK--DSSTSHSLDLTFVFGK

Query:  DRATEGATQVPVHMASRAHVEEEGDVNMGASPRYYVPVPLVFNVAIEAESTRAHNPYQETECNRDITGDEEEEG
        DRAT    +    + S          +MG     + PV     V I  +  RA  P + +E     +G + + G
Subjt:  DRATEGATQVPVHMASRAHVEEEGDVNMGASPRYYVPVPLVFNVAIEAESTRAHNPYQETECNRDITGDEEEEG

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]2.6e-2334.47Show/hide
Query:  FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYKCMEAEKDVFDAWIKVSHTQLR--KDSSTSHSLDLTFVFGK
        F+  YL +L+ M+ EK+ G  I  ++TIDC VKSLK+ Y AIAEM G  CSGFGWNEE++C+ AE+D+FD+WIK SH   +     S  +  DL++VFGK
Subjt:  FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYKCMEAEKDVFDAWIKVSHTQLR--KDSSTSHSLDLTFVFGK

Query:  DRATEGATQVPVHMASRAHVEEEGDVNMGASPRYYVPVPLVFNVAI---EAESTRAHNPYQETEC---NRDITGDEEEEGVILGRGPRH--HESSHGILD
        DRAT   ++   ++ S         + +G S    +P      V +   E    RA    +   C   ++   G E  E V + R      +E    I D
Subjt:  DRATEGATQVPVHMASRAHVEEEGDVNMGASPRYYVPVPLVFNVAI---EAESTRAHNPYQETEC---NRDITGDEEEEGVILGRGPRH--HESSHGILD

Query:  DPDDEDC----------RLLLGLPELTDDEMVDLMNILFLDSKT-STFLSIPLALKFQFYRCLL
         P ++            + L  +P+L   +   LM ILF   +    FLSIP  LK ++   LL
Subjt:  DPDDEDC----------RLLLGLPELTDDEMVDLMNILFLDSKT-STFLSIPLALKFQFYRCLL

XP_038880837.1 uncharacterized protein LOC120072528 [Benincasa hispida]1.9e-2144.27Show/hide
Query:  MFRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYKCMEAEKDVFDAWIKVSHTQLRK--DSSTSHSLDLTFVFG
        MFR  YL  L  +L EK+ GC ++   TI+CKV+SLK+QY A++EML    SGFGWNEE+KC++ E+++ D W++ SH   ++  + S SH  DL+ VFG
Subjt:  MFRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYKCMEAEKDVFDAWIKVSHTQLRK--DSSTSHSLDLTFVFG

Query:  KDRATEGATQVPVHMASRAHVEEEGDVNMGA
        KDR    +++ P  MA+ A  E E ++ +G+
Subjt:  KDRATEGATQVPVHMASRAHVEEEGDVNMGA

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859531.2e-2334.47Show/hide
Query:  FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYKCMEAEKDVFDAWIKVSHTQLR--KDSSTSHSLDLTFVFGK
        F+  YL +L+ M+ EK+ G  I  ++TIDC VKSLK+ Y AIAEM G  CSGFGWNEE++C+ AE+D+FD+WIK SH   +     S  +  DL++VFGK
Subjt:  FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYKCMEAEKDVFDAWIKVSHTQLR--KDSSTSHSLDLTFVFGK

Query:  DRATEGATQVPVHMASRAHVEEEGDVNMGASPRYYVPVPLVFNVAI---EAESTRAHNPYQETEC---NRDITGDEEEEGVILGRGPRH--HESSHGILD
        DRAT   ++   ++ S         + +G S    +P      V +   E    RA    +   C   ++   G E  E V + R      +E    I D
Subjt:  DRATEGATQVPVHMASRAHVEEEGDVNMGASPRYYVPVPLVFNVAI---EAESTRAHNPYQETEC---NRDITGDEEEEGVILGRGPRH--HESSHGILD

Query:  DPDDEDC----------RLLLGLPELTDDEMVDLMNILFLDSKT-STFLSIPLALKFQFYRCLL
         P ++            + L  +P+L   +   LM ILF   +    FLSIP  LK ++   LL
Subjt:  DPDDEDC----------RLLLGLPELTDDEMVDLMNILFLDSKT-STFLSIPLALKFQFYRCLL

A0A5A7U0H7 Retrotransposon protein1.2e-2334.47Show/hide
Query:  FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYKCMEAEKDVFDAWIKVSHTQLR--KDSSTSHSLDLTFVFGK
        F+  YL +L+ M+ EK+ G  I  ++TIDC VKSLK+ Y AIAEM G  CSGFGWNEE++C+ AE+D+FD+WIK SH   +     S  +  DL++VFGK
Subjt:  FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYKCMEAEKDVFDAWIKVSHTQLR--KDSSTSHSLDLTFVFGK

Query:  DRATEGATQVPVHMASRAHVEEEGDVNMGASPRYYVPVPLVFNVAI---EAESTRAHNPYQETEC---NRDITGDEEEEGVILGRGPRH--HESSHGILD
        DRAT   ++   ++ S         + +G S    +P      V +   E    RA    +   C   ++   G E  E V + R      +E    I D
Subjt:  DRATEGATQVPVHMASRAHVEEEGDVNMGASPRYYVPVPLVFNVAI---EAESTRAHNPYQETEC---NRDITGDEEEEGVILGRGPRH--HESSHGILD

Query:  DPDDEDC----------RLLLGLPELTDDEMVDLMNILFLDSKT-STFLSIPLALKFQFYRCLL
         P ++            + L  +P+L   +   LM ILF   +    FLSIP  LK ++   LL
Subjt:  DPDDEDC----------RLLLGLPELTDDEMVDLMNILFLDSKT-STFLSIPLALKFQFYRCLL

A0A5A7U308 Retrotransposon protein5.3e-2236.93Show/hide
Query:  FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYKCMEAEKDVFDAWIKVSHTQLR--KDSSTSHSLDLTFVFGK
        FR  YL +L  M+ +K+ GC +  TT IDC++K+LK+ + AIAEM GL CSGFGWN+E KC+ AEK++FD W++ SH + +   +    +  +LT+VFG+
Subjt:  FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYKCMEAEKDVFDAWIKVSHTQLR--KDSSTSHSLDLTFVFGK

Query:  DRATEGATQVPVHMASRAHVEEEGDVNMGASPRYYVPVPLVFN--VAIEAESTRAHNPYQETECNRDITGDEEEEG
        DRAT    +    + S    +     +MG     +   PLV++  V I  +  RA  P + +E     +G + + G
Subjt:  DRATEGATQVPVHMASRAHVEEEGDVNMGASPRYYVPVPLVFN--VAIEAESTRAHNPYQETECNRDITGDEEEEG

A0A5A7VHE7 Retrotransposon protein4.4e-2136.78Show/hide
Query:  FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYKCMEAEKDVFDAWIKVSHTQLR--KDSSTSHSLDLTFVFGK
        FR  YL +L  M+ EK+ GC +  TT IDC++K+LKQ + AIAEM G  CSGFGWN+E KC+ AEK++FD W++ SH   +   +    +  +LT+VFG+
Subjt:  FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYKCMEAEKDVFDAWIKVSHTQLR--KDSSTSHSLDLTFVFGK

Query:  DRATEGATQVPVHMASRAHVEEEGDVNMGASPRYYVPVPLVFNVAIEAESTRAHNPYQETECNRDITGDEEEEG
        +RAT    +    + S          +MG     + PV     V I  ++ RA  P + +E     +G + + G
Subjt:  DRATEGATQVPVHMASRAHVEEEGDVNMGASPRYYVPVPLVFNVAIEAESTRAHNPYQETECNRDITGDEEEEG

A0A5A7VHM3 Retrotransposon protein1.2e-2137.36Show/hide
Query:  FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYKCMEAEKDVFDAWIKVSHTQLRK--DSSTSHSLDLTFVFGK
        FR  YL +L  M+ EK+ GC +  TT IDC++K+LK+ + AIAEM G  CSGFGWN+E KC+ AEK++FD W++ SH   ++  +   S+  +LT+VFG+
Subjt:  FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYKCMEAEKDVFDAWIKVSHTQLRK--DSSTSHSLDLTFVFGK

Query:  DRATEGATQVPVHMASRAHVEEEGDVNMGASPRYYVPVPLVFNVAIEAESTRAHNPYQETECNRDITGDEEEEG
        DRAT    +    + S          +MG     + PV     V I  +  RA  P + +E     +G + + G
Subjt:  DRATEGATQVPVHMASRAHVEEEGDVNMGASPRYYVPVPLVFNVAIEAESTRAHNPYQETECNRDITGDEEEEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCAGGGCTAGTTATCTAACACGATTACGTTGGATGTTGAGAGAGAAAATTTCAGGGTGTACTATTGACTTGACAACGACGATAGATTGTAAAGTCAAATCCCTAAA
GCAGCAGTATGGTGCAATTGCCGAGATGTTGGGCCTGGGCTGTAGTGGCTTCGGGTGGAATGAAGAGTACAAATGCATGGAGGCTGAGAAAGATGTGTTCGATGCGTGGA
TCAAGGTAAGTCACACTCAATTGCGAAAGGACTCCTCAACAAGTCATTCCCTTGACTTGACTTTCGTGTTTGGTAAAGATCGAGCTACCGAAGGGGCTACACAAGTACCT
GTTCACATGGCCTCGAGGGCTCATGTGGAAGAAGAGGGCGATGTCAATATGGGAGCATCACCAAGGTATTATGTCCCAGTGCCACTCGTGTTCAATGTCGCTATCGAGGC
CGAGTCAACGCGTGCCCATAACCCCTACCAAGAGACCGAGTGCAATCGGGACATCACAGGGGATGAAGAGGAAGAGGGTGTCATACTAGGTAGAGGCCCTCGACATCATG
AGAGCAGCCATGGAATTCTAGACGACCCAGATGATGAGGATTGTAGACTGCTACTAGGGCTACCAGAGCTAACTGATGATGAGATGGTAGACCTCATGAATATTTTGTTC
CTAGACTCCAAGACAAGCACGTTCTTATCCATACCACTTGCACTGAAATTTCAATTCTATAGATGTCTGTTGAACGAGACTAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCAGGGCTAGTTATCTAACACGATTACGTTGGATGTTGAGAGAGAAAATTTCAGGGTGTACTATTGACTTGACAACGACGATAGATTGTAAAGTCAAATCCCTAAA
GCAGCAGTATGGTGCAATTGCCGAGATGTTGGGCCTGGGCTGTAGTGGCTTCGGGTGGAATGAAGAGTACAAATGCATGGAGGCTGAGAAAGATGTGTTCGATGCGTGGA
TCAAGGTAAGTCACACTCAATTGCGAAAGGACTCCTCAACAAGTCATTCCCTTGACTTGACTTTCGTGTTTGGTAAAGATCGAGCTACCGAAGGGGCTACACAAGTACCT
GTTCACATGGCCTCGAGGGCTCATGTGGAAGAAGAGGGCGATGTCAATATGGGAGCATCACCAAGGTATTATGTCCCAGTGCCACTCGTGTTCAATGTCGCTATCGAGGC
CGAGTCAACGCGTGCCCATAACCCCTACCAAGAGACCGAGTGCAATCGGGACATCACAGGGGATGAAGAGGAAGAGGGTGTCATACTAGGTAGAGGCCCTCGACATCATG
AGAGCAGCCATGGAATTCTAGACGACCCAGATGATGAGGATTGTAGACTGCTACTAGGGCTACCAGAGCTAACTGATGATGAGATGGTAGACCTCATGAATATTTTGTTC
CTAGACTCCAAGACAAGCACGTTCTTATCCATACCACTTGCACTGAAATTTCAATTCTATAGATGTCTGTTGAACGAGACTAGATGA
Protein sequenceShow/hide protein sequence
MFRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYKCMEAEKDVFDAWIKVSHTQLRKDSSTSHSLDLTFVFGKDRATEGATQVP
VHMASRAHVEEEGDVNMGASPRYYVPVPLVFNVAIEAESTRAHNPYQETECNRDITGDEEEEGVILGRGPRHHESSHGILDDPDDEDCRLLLGLPELTDDEMVDLMNILF
LDSKTSTFLSIPLALKFQFYRCLLNETR