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Spg027664 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027664
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGRF-type domain-containing protein
Genome locationscaffold6:37881486..37882442
RNA-Seq ExpressionSpg027664
SyntenySpg027664
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR010666 - Zinc finger, GRF-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6471955.1 hypothetical protein ZIOFF_069408 [Zingiber officinale]8.1e-0953.33Show/hide
Query:  ISGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKENGSGFGFFDWCDPEVSE
        ++ +  ET N S C+CGLRA L TSW + NPGRRF+ CP +++ G   GFF W DPE+SE
Subjt:  ISGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKENGSGFGFFDWCDPEVSE

KAG6514840.1 hypothetical protein ZIOFF_025214 [Zingiber officinale]1.6e-0965.96Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKENGSGFGFFDWCDPEVSE
        CHCGLRA L TSWT+ NPGRRF+ CP Y++ G   GFF W DPE+SE
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKENGSGFGFFDWCDPEVSE

XP_028803228.1 uncharacterized protein LOC114758343 [Prosopis alba]1.8e-0850.85Show/hide
Query:  SGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKENGSGFGFFDWCDPEVSE
        S D    +    C CG+ A L TSWT+ NPGRRFYGCP Y + G G+G+F W D E+ E
Subjt:  SGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKENGSGFGFFDWCDPEVSE

XP_042395711.1 uncharacterized protein LOC121986018 [Zingiber officinale]2.4e-0853.33Show/hide
Query:  ISGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKENGSGFGFFDWCDPEVSE
        ++ +  ET N S C+CGLRA L TSW + NPGRRF+ CP +++ G   GFF W DPE+SE
Subjt:  ISGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKENGSGFGFFDWCDPEVSE

XP_042445187.1 uncharacterized protein LOC122030096 [Zingiber officinale]8.1e-0953.33Show/hide
Query:  ISGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKENGSGFGFFDWCDPEVSE
        ++ +  ET N S C+CGLRA L TSW + NPGRRF+ CP +++ G   GFF W DPE+SE
Subjt:  ISGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKENGSGFGFFDWCDPEVSE

TrEMBL top hitse value%identityAlignment
A0A2U1MNB0 Zinc finger, GRF-type4.4e-0863.64Show/hide
Query:  YCHCGLRARLITSWTKRNPGRRFYGCPGYKENGSGFGFFDWCDP
        YCHCGLRA++ TSWT  NPGRRFY CP   +     GFFDW DP
Subjt:  YCHCGLRARLITSWTKRNPGRRFYGCPGYKENGSGFGFFDWCDP

A0A2U1PRH3 Zinc finger, GRF-type4.4e-0863.64Show/hide
Query:  YCHCGLRARLITSWTKRNPGRRFYGCPGYKENGSGFGFFDWCDP
        YCHCGLRA++ TSWT  NPGRRFY CP   +     GFFDW DP
Subjt:  YCHCGLRARLITSWTKRNPGRRFYGCPGYKENGSGFGFFDWCDP

A0A445HAE1 GRF-type domain-containing protein1.5e-0845.59Show/hide
Query:  EESISGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKENGS-GFGFFDWCDPEVSEPQQR
        E S S   S+ ++  +C C + A L+TSWT+ NPGRRFYGC  YK+ G+ G  FF W DP  +  Q++
Subjt:  EESISGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKENGS-GFGFFDWCDPEVSEPQQR

A0A6S7MJN4 GRF-type domain-containing protein2.6e-0849.09Show/hide
Query:  SGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKENGSGFGFFDWCDP
        S  +S + N   C+CG RA + TSWT++NPGRRF+GCP Y +     G+F W DP
Subjt:  SGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKENGSGFGFFDWCDP

A0A6S7PGH6 GRF-type domain-containing protein3.3e-0849.09Show/hide
Query:  SGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKENGSGFGFFDWCDP
        S  +S + N   C+CG RA + TSWT++NPGRRF+GCP Y +     G+F W DP
Subjt:  SGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKENGSGFGFFDWCDP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54930.1 GRF zinc finger / Zinc knuckle protein6.4e-0440.82Show/hide
Query:  NPSYCHCGLRA---RLITSWTKRNPGRRFYGCPGYKENGSGFGFFDWCD
        +P   HC   A     +TS T++NP RRFY CP         G+F WCD
Subjt:  NPSYCHCGLRA---RLITSWTKRNPGRRFYGCPGYKENGSGFGFFDWCD

AT3G42860.1 zinc knuckle (CCHC-type) family protein5.6e-0860.47Show/hide
Query:  CHCGLRARLI-TSWTKRNPGRRFYGCPGYKENGSGFGFFDWCD
        C CG+   LI TS T +NPGR+FY CP  +ENG G GFF WCD
Subjt:  CHCGLRARLI-TSWTKRNPGRRFYGCPGYKENGSGFGFFDWCD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACGAGAAATGCCACAGAAACTTTCAAAAATTGCAATGGATAACTTTGAAGAGTCCATAAGTGGCGATAATAGTGAAACTAAGAACCCTAGCTACTGTCACTGTGG
GTTACGAGCTCGATTAATAACTTCATGGACAAAGAGGAACCCTGGAAGAAGATTCTATGGATGTCCTGGTTACAAGGAGAATGGTTCGGGATTTGGGTTTTTTGATTGGT
GTGATCCAGAAGTATCAGAACCACAGCAAAGAAGTGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCACGAGAAATGCCACAGAAACTTTCAAAAATTGCAATGGATAACTTTGAAGAGTCCATAAGTGGCGATAATAGTGAAACTAAGAACCCTAGCTACTGTCACTGTGG
GTTACGAGCTCGATTAATAACTTCATGGACAAAGAGGAACCCTGGAAGAAGATTCTATGGATGTCCTGGTTACAAGGAGAATGGTTCGGGATTTGGGTTTTTTGATTGGT
GTGATCCAGAAGTATCAGAACCACAGCAAAGAAGTGATTAA
Protein sequenceShow/hide protein sequence
MSREMPQKLSKIAMDNFEESISGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKENGSGFGFFDWCDPEVSEPQQRSD