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Spg027702 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027702
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRING-H2 finger protein ATL56-like
Genome locationscaffold7:32314210..32314786
RNA-Seq ExpressionSpg027702
SyntenySpg027702
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651650.1 hypothetical protein Csa_021355 [Cucumis sativus]5.2e-1261.54Show/hide
Query:  NNPQMPLQDFVAAHSGDSTLQ----SKLETRVQSLLLKVAIMIFLTTLFFILIGLATTLLLIHLCIVSALHRRYR---RYFQFLDSSSGFS
        NNPQMP Q   AA SG          K ET++ SLLLK+AIMI LTTLFF+ +GLAT LLLIHLC+ SALHRR R   R+ Q+ DSSSGFS
Subjt:  NNPQMPLQDFVAAHSGDSTLQ----SKLETRVQSLLLKVAIMIFLTTLFFILIGLATTLLLIHLCIVSALHRRYR---RYFQFLDSSSGFS

KAG6586190.1 RING-H2 finger protein ATL56, partial [Cucurbita argyrosperma subsp. sororia]4.4e-1161.9Show/hide
Query:  MPLQDFVAAHSGDSTLQSKLETRVQSLLLKVAIMIFLTTLFFILIGLATTLLLIHLCIVSALH----RRYRRYFQFLDSSSGFS
        MPLQD  AA +GD     K E +V SLLLKV+IMI LTTLFF+ +GLAT LLLI+ C+ S LH    RR+RR  QF DSSSGFS
Subjt:  MPLQDFVAAHSGDSTLQSKLETRVQSLLLKVAIMIFLTTLFFILIGLATTLLLIHLCIVSALH----RRYRRYFQFLDSSSGFS

XP_022153343.1 RING-H2 finger protein ATL56-like [Momordica charantia]2.4e-1264.29Show/hide
Query:  MPLQDFVAAHSGDSTLQSKLETRVQSLLLKVAIMIFLTTLFFILIGLATTLLLIHLCIVSALHRRYR---RYFQFLDSSSGFSP
        MP QD  AAH GD     K ET+V SLLLKV IMI LTTLFF+ +GLAT LLLIHLC+ SALHRR R   R+ +  +SSSGFSP
Subjt:  MPLQDFVAAHSGDSTLQSKLETRVQSLLLKVAIMIFLTTLFFILIGLATTLLLIHLCIVSALHRRYR---RYFQFLDSSSGFSP

XP_022965979.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]3.4e-1161.9Show/hide
Query:  MPLQDFVAAHSGDSTLQSKLETRVQSLLLKVAIMIFLTTLFFILIGLATTLLLIHLCIVSALHRRYRRYF----QFLDSSSGFS
        MPLQD  AA++GD     K E +V SLLLKV+IMI LTTLFF+ +GLAT LLLI+ C+ S LHRR RR      QF DSSSGFS
Subjt:  MPLQDFVAAHSGDSTLQSKLETRVQSLLLKVAIMIFLTTLFFILIGLATTLLLIHLCIVSALHRRYRRYF----QFLDSSSGFS

XP_023538017.1 RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo]4.4e-1161.9Show/hide
Query:  MPLQDFVAAHSGDSTLQSKLETRVQSLLLKVAIMIFLTTLFFILIGLATTLLLIHLCIVSALH----RRYRRYFQFLDSSSGFS
        MPLQD  AA +GD     K E +V SLLLKV+IMI LTTLFF+ +GLAT LLLI+ C+ S LH    RR+RR  QF DSSSGFS
Subjt:  MPLQDFVAAHSGDSTLQSKLETRVQSLLLKVAIMIFLTTLFFILIGLATTLLLIHLCIVSALH----RRYRRYFQFLDSSSGFS

TrEMBL top hitse value%identityAlignment
A0A0A0LJ61 RING-type domain-containing protein2.5e-1261.54Show/hide
Query:  NNPQMPLQDFVAAHSGDSTLQ----SKLETRVQSLLLKVAIMIFLTTLFFILIGLATTLLLIHLCIVSALHRRYR---RYFQFLDSSSGFS
        NNPQMP Q   AA SG          K ET++ SLLLK+AIMI LTTLFF+ +GLAT LLLIHLC+ SALHRR R   R+ Q+ DSSSGFS
Subjt:  NNPQMPLQDFVAAHSGDSTLQ----SKLETRVQSLLLKVAIMIFLTTLFFILIGLATTLLLIHLCIVSALHRRYR---RYFQFLDSSSGFS

A0A5D3CFV1 RING-H2 finger protein ATL564.1e-1060.92Show/hide
Query:  MPLQDFVAAHSGDSTLQ----SKLETRVQSLLLKVAIMIFLTTLFFILIGLATTLLLIHLCIVSALHRRYR---RYFQFLDSSSGFS
        MP Q   AA SGD         K ET++ SLLLK+AIMI LTTLFF+ +GLAT LLLIHLC+ SALHRR R   R  Q+ DSSSGFS
Subjt:  MPLQDFVAAHSGDSTLQ----SKLETRVQSLLLKVAIMIFLTTLFFILIGLATTLLLIHLCIVSALHRRYR---RYFQFLDSSSGFS

A0A6J1DH78 RING-H2 finger protein ATL56-like1.1e-1264.29Show/hide
Query:  MPLQDFVAAHSGDSTLQSKLETRVQSLLLKVAIMIFLTTLFFILIGLATTLLLIHLCIVSALHRRYR---RYFQFLDSSSGFSP
        MP QD  AAH GD     K ET+V SLLLKV IMI LTTLFF+ +GLAT LLLIHLC+ SALHRR R   R+ +  +SSSGFSP
Subjt:  MPLQDFVAAHSGDSTLQSKLETRVQSLLLKVAIMIFLTTLFFILIGLATTLLLIHLCIVSALHRRYR---RYFQFLDSSSGFSP

A0A6J1FIL3 RING-H2 finger protein ATL56-like2.2e-1161.9Show/hide
Query:  MPLQDFVAAHSGDSTLQSKLETRVQSLLLKVAIMIFLTTLFFILIGLATTLLLIHLCIVSALH----RRYRRYFQFLDSSSGFS
        MPLQD  AA +GD     K E +V SLLLKV+IMI LTTLFF+ +GLAT LLLI+ C+ S LH    RR+RR  QF DSSSGFS
Subjt:  MPLQDFVAAHSGDSTLQSKLETRVQSLLLKVAIMIFLTTLFFILIGLATTLLLIHLCIVSALH----RRYRRYFQFLDSSSGFS

A0A6J1HSE6 RING-H2 finger protein ATL56-like1.6e-1161.9Show/hide
Query:  MPLQDFVAAHSGDSTLQSKLETRVQSLLLKVAIMIFLTTLFFILIGLATTLLLIHLCIVSALHRRYRRYF----QFLDSSSGFS
        MPLQD  AA++GD     K E +V SLLLKV+IMI LTTLFF+ +GLAT LLLI+ C+ S LHRR RR      QF DSSSGFS
Subjt:  MPLQDFVAAHSGDSTLQSKLETRVQSLLLKVAIMIFLTTLFFILIGLATTLLLIHLCIVSALHRRYRRYF----QFLDSSSGFS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCACAATAACAATCCACAAATGCCCCTTCAAGATTTTGTCGCCGCCCACAGTGGCGACTCGACGCTGCAATCAAAGCTAGAGACCAGAGTCCAGTCTCTGCTCCT
CAAGGTCGCCATCATGATCTTCTTAACCACCCTCTTCTTCATTTTAATAGGCCTCGCCACCACCCTCCTTCTCATCCACCTCTGCATTGTCAGTGCCCTCCACCGCCGCT
ATCGTCGCTATTTCCAATTCCTCGATTCCTCATCTGGGTTCTCCCCTCTGACCTCAAAAAGCTCCTCCAGTTCCGATTCTCCAATTGGGTCAATCCCCACACGCAAATTG
ACTGCCCTATTTGCCTTGATGGCTTTAGAAAAGGCCGGTGGTGTACAAAACTTGGTGGGTGCAGCCATGTTTATCATCGGAAGTGCATCAATTCCTGACGTTCGATTGGA
TATATATGGAAGAAGATCATATCAGAGGAGAGGGAAAGGGAAGAAGGAGAATGGAGTGGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCCACAATAACAATCCACAAATGCCCCTTCAAGATTTTGTCGCCGCCCACAGTGGCGACTCGACGCTGCAATCAAAGCTAGAGACCAGAGTCCAGTCTCTGCTCCT
CAAGGTCGCCATCATGATCTTCTTAACCACCCTCTTCTTCATTTTAATAGGCCTCGCCACCACCCTCCTTCTCATCCACCTCTGCATTGTCAGTGCCCTCCACCGCCGCT
ATCGTCGCTATTTCCAATTCCTCGATTCCTCATCTGGGTTCTCCCCTCTGACCTCAAAAAGCTCCTCCAGTTCCGATTCTCCAATTGGGTCAATCCCCACACGCAAATTG
ACTGCCCTATTTGCCTTGATGGCTTTAGAAAAGGCCGGTGGTGTACAAAACTTGGTGGGTGCAGCCATGTTTATCATCGGAAGTGCATCAATTCCTGACGTTCGATTGGA
TATATATGGAAGAAGATCATATCAGAGGAGAGGGAAAGGGAAGAAGGAGAATGGAGTGGAGTAG
Protein sequenceShow/hide protein sequence
MFHNNNPQMPLQDFVAAHSGDSTLQSKLETRVQSLLLKVAIMIFLTTLFFILIGLATTLLLIHLCIVSALHRRYRRYFQFLDSSSGFSPLTSKSSSSSDSPIGSIPTRKL
TALFALMALEKAGGVQNLVGAAMFIIGSASIPDVRLDIYGRRSYQRRGKGKKENGVE