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Spg027705 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027705
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold7:32652380..32654068
RNA-Seq ExpressionSpg027705
SyntenySpg027705
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]9.8e-1655.88Show/hide
Query:  PRGNRSSLQTRELAKTPEAIWYRVHTGYVPLLTLSVLRDNDAVVEIELPMSDTLSTFAESFRTSSSSTIQEDQRVSLEEDDVRWLHAIFRAKLAGGPGGG
        PRGNR SLQT EL KT   +          LLTL+VL DNDA+VEIELP+SDTL   AES  ++S S         + EDDV WLH +FR K AGGPGGG
Subjt:  PRGNRSSLQTRELAKTPEAIWYRVHTGYVPLLTLSVLRDNDAVVEIELPMSDTLSTFAESFRTSSSSTIQEDQRVSLEEDDVRWLHAIFRAKLAGGPGGG

Query:  VT
        VT
Subjt:  VT

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.4e-1654.05Show/hide
Query:  PRGNRSSLQTRELAKTPEAIWYRVHTGYVPLLTLSVLRDNDAVVEIELPMSDTLSTFAESFRTSSSSTIQ---EDQRVS-------LEEDDVRWLHAIFR
        PRGNR SLQT EL KT              L TLSVLRDND VVEIELPM DTL T AES  ++SS+ ++   E   V        +  DDV WLHA+FR
Subjt:  PRGNRSSLQTRELAKTPEAIWYRVHTGYVPLLTLSVLRDNDAVVEIELPMSDTLSTFAESFRTSSSSTIQ---EDQRVS-------LEEDDVRWLHAIFR

Query:  AKLAGGPGGGV
        AK  GGPGGGV
Subjt:  AKLAGGPGGGV

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]1.6e-1860.19Show/hide
Query:  RPRGNRSSLQTRELAKTPEAIWYRVHTGYVPLLTLSVLRDNDAVVEIELPMSDTLSTFAESFRTSSSSTIQEDQRVSLEEDDVRWLHAIFRAKLAGGPGG
        RPRGNR SLQT +L KT              L TLSVLRDNDAVVEIELP+ DTL T AESF ++S ST        +  DDV WLHA+FRAK AGGPGG
Subjt:  RPRGNRSSLQTRELAKTPEAIWYRVHTGYVPLLTLSVLRDNDAVVEIELPMSDTLSTFAESFRTSSSSTIQEDQRVSLEEDDVRWLHAIFRAKLAGGPGG

Query:  GVT
        GVT
Subjt:  GVT

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.4e-1654.05Show/hide
Query:  PRGNRSSLQTRELAKTPEAIWYRVHTGYVPLLTLSVLRDNDAVVEIELPMSDTLSTFAESFRTSSSSTIQ---EDQRVS-------LEEDDVRWLHAIFR
        PRGNR SLQT EL KT              L TLSVLRDND VVEIELPM DTL T AES  ++SS+ ++   E   V        +  DDV WLHA+FR
Subjt:  PRGNRSSLQTRELAKTPEAIWYRVHTGYVPLLTLSVLRDNDAVVEIELPMSDTLSTFAESFRTSSSSTIQ---EDQRVS-------LEEDDVRWLHAIFR

Query:  AKLAGGPGGGV
        AK  GGPGGGV
Subjt:  AKLAGGPGGGV

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]2.9e-1548.44Show/hide
Query:  PRGNRSSLQTRELAKTPEAIWYRVHTGYVPLLTLSVLRDNDAVVEIELPMSDTLSTFAESFRTSSSSTIQ---------------EDQRVS---------
        PRGNR  LQT EL K              PL TLSVLRDNDAVVEIELP+ DTL T AES  ++SS+ ++                D R +         
Subjt:  PRGNRSSLQTRELAKTPEAIWYRVHTGYVPLLTLSVLRDNDAVVEIELPMSDTLSTFAESFRTSSSSTIQ---------------EDQRVS---------

Query:  --LEEDDVRWLHAIFRAKLAGGPGGGVT
          +  DDV WLHAIFRAK AGGPGGGVT
Subjt:  --LEEDDVRWLHAIFRAKLAGGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase2.1e-1654.05Show/hide
Query:  PRGNRSSLQTRELAKTPEAIWYRVHTGYVPLLTLSVLRDNDAVVEIELPMSDTLSTFAESFRTSSSSTIQ---EDQRVS-------LEEDDVRWLHAIFR
        PRGNR SLQT EL KT              L TLSVLRDND VVEIELPM DTL T AES  ++SS+ ++   E   V        +  DDV WLHA+FR
Subjt:  PRGNRSSLQTRELAKTPEAIWYRVHTGYVPLLTLSVLRDNDAVVEIELPMSDTLSTFAESFRTSSSSTIQ---EDQRVS-------LEEDDVRWLHAIFR

Query:  AKLAGGPGGGV
        AK  GGPGGGV
Subjt:  AKLAGGPGGGV

A0A5A7VIY9 Uncharacterized protein1.4e-1547.66Show/hide
Query:  PRGNRSSLQTRELAKTPEAIWYRVHTGYVPLLTLSVLRDNDAVVEIELPMSDTLSTFAESFRTSSSSTIQ---------------EDQRVS---------
        PRGNRSSLQT EL KT   +          L TLSVL DN+AVVEIELP+ DTL T AESF ++SS+ ++                D R +         
Subjt:  PRGNRSSLQTRELAKTPEAIWYRVHTGYVPLLTLSVLRDNDAVVEIELPMSDTLSTFAESFRTSSSSTIQ---------------EDQRVS---------

Query:  --LEEDDVRWLHAIFRAKLAGGPGGGVT
          +  DDV WLH +FRAK+AGGPGGGVT
Subjt:  --LEEDDVRWLHAIFRAKLAGGPGGGVT

A0A5D3BAD1 Retrotrans_gag domain-containing protein7.9e-1960.19Show/hide
Query:  RPRGNRSSLQTRELAKTPEAIWYRVHTGYVPLLTLSVLRDNDAVVEIELPMSDTLSTFAESFRTSSSSTIQEDQRVSLEEDDVRWLHAIFRAKLAGGPGG
        RPRGNR SLQT +L KT              L TLSVLRDNDAVVEIELP+ DTL T AESF ++S ST        +  DDV WLHA+FRAK AGGPGG
Subjt:  RPRGNRSSLQTRELAKTPEAIWYRVHTGYVPLLTLSVLRDNDAVVEIELPMSDTLSTFAESFRTSSSSTIQEDQRVSLEEDDVRWLHAIFRAKLAGGPGG

Query:  GVT
        GVT
Subjt:  GVT

A0A5D3BSA6 Retrotrans_gag domain-containing protein4.8e-1655.88Show/hide
Query:  PRGNRSSLQTRELAKTPEAIWYRVHTGYVPLLTLSVLRDNDAVVEIELPMSDTLSTFAESFRTSSSSTIQEDQRVSLEEDDVRWLHAIFRAKLAGGPGGG
        PRGNR SLQT EL KT   +          LLTL+VL DNDA+VEIELP+SDTL   AES  ++S S         + EDDV WLH +FR K AGGPGGG
Subjt:  PRGNRSSLQTRELAKTPEAIWYRVHTGYVPLLTLSVLRDNDAVVEIELPMSDTLSTFAESFRTSSSSTIQEDQRVSLEEDDVRWLHAIFRAKLAGGPGGG

Query:  VT
        VT
Subjt:  VT

A0A5D3D150 Reverse transcriptase2.1e-1654.05Show/hide
Query:  PRGNRSSLQTRELAKTPEAIWYRVHTGYVPLLTLSVLRDNDAVVEIELPMSDTLSTFAESFRTSSSSTIQ---EDQRVS-------LEEDDVRWLHAIFR
        PRGNR SLQT EL KT              L TLSVLRDND VVEIELPM DTL T AES  ++SS+ ++   E   V        +  DDV WLHA+FR
Subjt:  PRGNRSSLQTRELAKTPEAIWYRVHTGYVPLLTLSVLRDNDAVVEIELPMSDTLSTFAESFRTSSSSTIQ---EDQRVS-------LEEDDVRWLHAIFR

Query:  AKLAGGPGGGV
        AK  GGPGGGV
Subjt:  AKLAGGPGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTTAAGTAGGTTTAATTTCAGGAGAAAGATAAAGGGCAGCAGAGAAGCCCGAATCTGTGTTGTCTGTGTTCGGGGCGTTTCTGGGCAAATTGGATGGGAATCTCG
CTTTCCTTTCTTCAGGCCAAGGGGAAATAGGTCGAGCCTACAGACCAGGGAACTAGCTAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATGTACCGTTGT
TGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGATGTCTGATACACTGTCAACGTTTGCTGAAAGTTTCAGAACAAGCTCCAGTTCAACG
ATTCAGGAGGATCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGTTAGCAGGTGGTCCGGGAGGGGGTGTGACAATTGAGGA
AGACGAGACTGACTCAATGTGTTTGTTCAATCAAAACTCTTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTTTAAGTAGGTTTAATTTCAGGAGAAAGATAAAGGGCAGCAGAGAAGCCCGAATCTGTGTTGTCTGTGTTCGGGGCGTTTCTGGGCAAATTGGATGGGAATCTCG
CTTTCCTTTCTTCAGGCCAAGGGGAAATAGGTCGAGCCTACAGACCAGGGAACTAGCTAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATGTACCGTTGT
TGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGATGTCTGATACACTGTCAACGTTTGCTGAAAGTTTCAGAACAAGCTCCAGTTCAACG
ATTCAGGAGGATCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGTTAGCAGGTGGTCCGGGAGGGGGTGTGACAATTGAGGA
AGACGAGACTGACTCAATGTGTTTGTTCAATCAAAACTCTTGTTGA
Protein sequenceShow/hide protein sequence
MTLSRFNFRRKIKGSREARICVVCVRGVSGQIGWESRFPFFRPRGNRSSLQTRELAKTPEAIWYRVHTGYVPLLTLSVLRDNDAVVEIELPMSDTLSTFAESFRTSSSST
IQEDQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTIEEDETDSMCLFNQNSC