CuGenDBv2

Gene ID	Spg027728
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	splicing factor U2AF-associated protein 2
Genome location	scaffold7:32537390..32539945
RNA-Seq Expression	Spg027728
Synteny	Spg027728
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR034393 - TatSF1-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022158647.1 splicing factor U2AF-associated protein 2 [Momordica charantia]

5.3e-48

87.07

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Query:  DDAFFKHEQYGPEEMTFMQEEEVFPQLQADASCTSIKEENDSVPSISIKEEEDCVTKEANGKSEEIETKQNGKRKLGGKQVEKKEANKGPDGWFELKINT
        DDAFFKHEQYGPEEMTFMQEEEVFP LQ DA+CT IKE +DSVPS SIKE++D VTKEANGKSE+IETKQNGKRKL  KQVEKKEANKGPDGWFELKINT
Subjt:  DDAFFKHEQYGPEEMTFMQEEEVFPQLQADASCTSIKEENDSVPSISIKEEEDCVTKEANGKSEEIETKQNGKRKLGGKQVEKKEANKGPDGWFELKINT

Query:  HVYITGLPDDVTIDEV
        HVY+TGLP+DVTIDEV
Subjt:  HVYITGLPDDVTIDEV

XP_038882573.1 splicing factor U2AF-associated protein 2 isoform X1 [Benincasa hispida]

2.4e-48

89.66

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Query:  DDAFFKHEQYGPEEMTFMQEEEVFPQLQADASCTSIKEENDSVPSISIKEEEDCVTKEANGKSEEIETKQNGKRKLGGKQVEKKEANKGPDGWFELKINT
        DDAFFKHEQYGPEEMTFMQEEEVFPQL+ADA CTSIKEE DSVPS SIK EED VTKEANGKSE+IETK+NGKRKL G QVEKKEANKGPDGWFELKINT
Subjt:  DDAFFKHEQYGPEEMTFMQEEEVFPQLQADASCTSIKEENDSVPSISIKEEEDCVTKEANGKSEEIETKQNGKRKLGGKQVEKKEANKGPDGWFELKINT

Query:  HVYITGLPDDVTIDEV
        HVY+TGLP+DVTIDEV
Subjt:  HVYITGLPDDVTIDEV

XP_038882574.1 splicing factor U2AF-associated protein 2 isoform X2 [Benincasa hispida]

2.4e-48

89.66

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Query:  DDAFFKHEQYGPEEMTFMQEEEVFPQLQADASCTSIKEENDSVPSISIKEEEDCVTKEANGKSEEIETKQNGKRKLGGKQVEKKEANKGPDGWFELKINT
        DDAFFKHEQYGPEEMTFMQEEEVFPQL+ADA CTSIKEE DSVPS SIK EED VTKEANGKSE+IETK+NGKRKL G QVEKKEANKGPDGWFELKINT
Subjt:  DDAFFKHEQYGPEEMTFMQEEEVFPQLQADASCTSIKEENDSVPSISIKEEEDCVTKEANGKSEEIETKQNGKRKLGGKQVEKKEANKGPDGWFELKINT

Query:  HVYITGLPDDVTIDEV
        HVY+TGLP+DVTIDEV
Subjt:  HVYITGLPDDVTIDEV

XP_038882575.1 splicing factor U2AF-associated protein 2 isoform X3 [Benincasa hispida]

2.4e-48

89.66

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Query:  DDAFFKHEQYGPEEMTFMQEEEVFPQLQADASCTSIKEENDSVPSISIKEEEDCVTKEANGKSEEIETKQNGKRKLGGKQVEKKEANKGPDGWFELKINT
        DDAFFKHEQYGPEEMTFMQEEEVFPQL+ADA CTSIKEE DSVPS SIK EED VTKEANGKSE+IETK+NGKRKL G QVEKKEANKGPDGWFELKINT
Subjt:  DDAFFKHEQYGPEEMTFMQEEEVFPQLQADASCTSIKEENDSVPSISIKEEEDCVTKEANGKSEEIETKQNGKRKLGGKQVEKKEANKGPDGWFELKINT

Query:  HVYITGLPDDVTIDEV
        HVY+TGLP+DVTIDEV
Subjt:  HVYITGLPDDVTIDEV

XP_038882576.1 splicing factor U2AF-associated protein 2 isoform X4 [Benincasa hispida]

2.4e-48

89.66

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Query:  DDAFFKHEQYGPEEMTFMQEEEVFPQLQADASCTSIKEENDSVPSISIKEEEDCVTKEANGKSEEIETKQNGKRKLGGKQVEKKEANKGPDGWFELKINT
        DDAFFKHEQYGPEEMTFMQEEEVFPQL+ADA CTSIKEE DSVPS SIK EED VTKEANGKSE+IETK+NGKRKL G QVEKKEANKGPDGWFELKINT
Subjt:  DDAFFKHEQYGPEEMTFMQEEEVFPQLQADASCTSIKEENDSVPSISIKEEEDCVTKEANGKSEEIETKQNGKRKLGGKQVEKKEANKGPDGWFELKINT

Query:  HVYITGLPDDVTIDEV
        HVY+TGLP+DVTIDEV
Subjt:  HVYITGLPDDVTIDEV

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B523 splicing factor U2AF-associated protein 2

7.8e-45

84.48

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Query:  DDAFFKHEQYGPEEMTFMQEEEVFPQLQADASCTSIKEENDSVPSISIKEEEDCVTKEANGKSEEIETKQNGKRKLGGKQVEKKEANKGPDGWFELKINT
        DDAFFKHEQY PE+MTFMQEEEVFPQL+ADA CTSIKEE DSVPS S+  E D VTKE NGKSEEIETK+N KRKL G QVEKKEANKGPDGWFELKINT
Subjt:  DDAFFKHEQYGPEEMTFMQEEEVFPQLQADASCTSIKEENDSVPSISIKEEEDCVTKEANGKSEEIETKQNGKRKLGGKQVEKKEANKGPDGWFELKINT

Query:  HVYITGLPDDVTIDEV
        HVY+TGLP+DVTIDEV
Subjt:  HVYITGLPDDVTIDEV

A0A5D3BUE8 Splicing factor U2AF-associated protein 2

7.8e-45

84.48

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Query:  DDAFFKHEQYGPEEMTFMQEEEVFPQLQADASCTSIKEENDSVPSISIKEEEDCVTKEANGKSEEIETKQNGKRKLGGKQVEKKEANKGPDGWFELKINT
        DDAFFKHEQY PE+MTFMQEEEVFPQL+ADA CTSIKEE DSVPS S+  E D VTKE NGKSEEIETK+N KRKL G QVEKKEANKGPDGWFELKINT
Subjt:  DDAFFKHEQYGPEEMTFMQEEEVFPQLQADASCTSIKEENDSVPSISIKEEEDCVTKEANGKSEEIETKQNGKRKLGGKQVEKKEANKGPDGWFELKINT

Query:  HVYITGLPDDVTIDEV
        HVY+TGLP+DVTIDEV
Subjt:  HVYITGLPDDVTIDEV

A0A6J1DXR6 splicing factor U2AF-associated protein 2

2.6e-48

87.07

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Query:  DDAFFKHEQYGPEEMTFMQEEEVFPQLQADASCTSIKEENDSVPSISIKEEEDCVTKEANGKSEEIETKQNGKRKLGGKQVEKKEANKGPDGWFELKINT
        DDAFFKHEQYGPEEMTFMQEEEVFP LQ DA+CT IKE +DSVPS SIKE++D VTKEANGKSE+IETKQNGKRKL  KQVEKKEANKGPDGWFELKINT
Subjt:  DDAFFKHEQYGPEEMTFMQEEEVFPQLQADASCTSIKEENDSVPSISIKEEEDCVTKEANGKSEEIETKQNGKRKLGGKQVEKKEANKGPDGWFELKINT

Query:  HVYITGLPDDVTIDEV
        HVY+TGLP+DVTIDEV
Subjt:  HVYITGLPDDVTIDEV

A0A6J1G3U1 HIV Tat-specific factor 1

1.4e-46

87.07

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Query:  DDAFFKHEQYGPEEMTFMQEEEVFPQLQADASCTSIKEENDSVPSISIKEEEDCVTKEANGKSEEIETKQNGKRKLGGKQVEKKEANKGPDGWFELKINT
        DDAFFKHEQYG EEMTF+QEEEVFPQL  D +CTSIKEE+DSVPS SIK EEDCVTKEAN KSE++ETKQNGKRKL  KQVEKKEANKGPDGWFELKINT
Subjt:  DDAFFKHEQYGPEEMTFMQEEEVFPQLQADASCTSIKEENDSVPSISIKEEEDCVTKEANGKSEEIETKQNGKRKLGGKQVEKKEANKGPDGWFELKINT

Query:  HVYITGLPDDVTIDEV
        HVYITGLP+DVTIDEV
Subjt:  HVYITGLPDDVTIDEV

A0A6J1I789 HIV Tat-specific factor 1

4.1e-46

85.34

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Query:  DDAFFKHEQYGPEEMTFMQEEEVFPQLQADASCTSIKEENDSVPSISIKEEEDCVTKEANGKSEEIETKQNGKRKLGGKQVEKKEANKGPDGWFELKINT
        DDAFFKHEQYG EEMTF+QE+E+FPQL  D +CTSIKEE+DSVPS SIK EEDCVTKEAN KSE++ETKQNGKRKL  KQVEKKEANKGPDGWFELKINT
Subjt:  DDAFFKHEQYGPEEMTFMQEEEVFPQLQADASCTSIKEENDSVPSISIKEEEDCVTKEANGKSEEIETKQNGKRKLGGKQVEKKEANKGPDGWFELKINT

Query:  HVYITGLPDDVTIDEV
        HVYITGLP+DVTIDEV
Subjt:  HVYITGLPDDVTIDEV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G16260.1 RNA binding (RRM/RBD/RNP motifs) family protein

2.9e-20

45.9

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Query:  LWYKIIDDAFFKHEQYGPEEMTFMQEEEVFPQLQADASCTSIKEENDSVPSISIKEEEDCVTKEANGKSEEIETKQNGKRKLGGKQVEKKEANKGPDGWF
        +W    D      + YG EEMTF +E+EVFP +  +   TS+ +++ S   ++ K+EED       G  E  E   NGKRKL   + EKKE NK PD WF
Subjt:  LWYKIIDDAFFKHEQYGPEEMTFMQEEEVFPQLQADASCTSIKEENDSVPSISIKEEEDCVTKEANGKSEEIETKQNGKRKLGGKQVEKKEANKGPDGWF

Query:  ELKINTHVYITGLPDDVTIDEV
        ELK+N H+Y+ GLPDDVTI+EV
Subjt:  ELKINTHVYITGLPDDVTIDEV

Sequences

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CDS sequence

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ATGTGGCGTTTCCCCATTGAATCCTCTTCCTTGTGGTATAAGATTATTGATGATGCTTTTTTTAAACATGAGCAATATGGGCCTGAAGAGATGACTTTCATGCAAGAAGA
AGAAGTCTTTCCGCAGCTTCAAGCCGATGCTTCTTGCACCTCCATTAAGGAAGAAAATGATTCTGTTCCTTCCATCTCCATCAAGGAAGAAGAAGATTGTGTCACAAAAG
AAGCTAATGGCAAAAGTGAGGAGATCGAAACCAAACAGAACGGGAAGAGAAAATTGGGTGGCAAACAAGTTGAAAAAAAGGAAGCAAACAAAGGTCCTGATGGTTGGTTT
GAATTAAAAATAAATACACATGTTTACATAACAGGGCTGCCAGATGATGTTACTATTGATGAAGTATGTTTTAGACATGTACCACTAGTTGTTGTATCTTTGAGCATTGT
TTCCATAGGATGA

mRNA sequence

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Protein sequence

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MWRFPIESSSLWYKIIDDAFFKHEQYGPEEMTFMQEEEVFPQLQADASCTSIKEENDSVPSISIKEEEDCVTKEANGKSEEIETKQNGKRKLGGKQVEKKEANKGPDGWF
ELKINTHVYITGLPDDVTIDEVCFRHVPLVVVSLSIVSIG

Spg027728 (gene) of Sponge gourd (cylindrica) v1 genome