CuGenDBv2

Gene ID	Spg027735
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Pyridoxal 5'-phosphate synthase subunit PdxT
Genome location	scaffold7:32684601..32688834
RNA-Seq Expression	Spg027735
Synteny	Spg027735
Gene Ontology terms	GO:0006541 - glutamine metabolic process (biological process) GO:0008614 - pyridoxine metabolic process (biological process) GO:0042823 - pyridoxal phosphate biosynthetic process (biological process) GO:0005829 - cytosol (cellular component) GO:1903600 - glutaminase complex (cellular component) GO:0004359 - glutaminase activity (molecular function)
InterPro domains	IPR002161 - Pyridoxal 5'-phosphate synthase subunit PdxT/SNO IPR029062 - Class I glutamine amidotransferase-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022140743.1 probable pyridoxal 5'-phosphate synthase subunit PDX2 [Momordica charantia]

2.1e-32

77.67

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Query:  ALRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGS--LSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFG
        ALRRLGVK VEI +PEQLLNVA LIIP GESTTMAKL ELHNLFP LREFVRMG      C     AGLI LAN+ATGQKT GQE VGGLDCTVHRNFFG
Subjt:  ALRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGS--LSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFG

Query:  SQV
        SQ+
Subjt:  SQV

XP_022944556.1 probable pyridoxal 5'-phosphate synthase subunit PDX2 [Cucurbita moschata]

4.7e-32

76.7

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Query:  ALRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGS--LSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFG
        ALRRLGVK VEI +PEQLLNVA LIIP GESTTMAKL +LHNLFP LREFVRMG      C     AGLI LAN+ATGQKT GQE VGGLDCTVHRNFFG
Subjt:  ALRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGS--LSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFG

Query:  SQV
        SQ+
Subjt:  SQV

XP_022986058.1 probable pyridoxal 5'-phosphate synthase subunit PDX2 [Cucurbita maxima]

4.7e-32

76.7

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Query:  ALRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGS--LSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFG
        ALRRLGVK VEI +PEQLLNVA LIIP GESTTMAKL +LHNLFP LREFVRMG      C     AGLI LAN+ATGQKT GQE VGGLDCTVHRNFFG
Subjt:  ALRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGS--LSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFG

Query:  SQV
        SQ+
Subjt:  SQV

XP_023522767.1 probable pyridoxal 5'-phosphate synthase subunit PDX2 [Cucurbita pepo subsp. pepo]

2.1e-32

77.67

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Query:  ALRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGS--LSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFG
        ALRRLGVK VEI +PEQLLNVA LIIP GESTTMAKL +LHNLFP LREFVRMG      C     AGLI LAN+ATGQKT GQE VGGLDCTVHRNFFG
Subjt:  ALRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGS--LSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFG

Query:  SQV
        SQV
Subjt:  SQV

XP_023534477.1 probable pyridoxal 5'-phosphate synthase subunit PDX2 isoform X2 [Cucurbita pepo subsp. pepo]

4.7e-32

76.7

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Query:  ALRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGS--LSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFG
        ALRRLGVK VEI +PEQLL+VA LIIP GESTTMAKL ELHNLFP+LREFVRMG      C     AGLI LAN+ATGQKT GQE VGGLDCTVHRNFFG
Subjt:  ALRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGS--LSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFG

Query:  SQV
        SQ+
Subjt:  SQV

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CIP7 Glutaminase

1.0e-32

77.67

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Query:  ALRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGS--LSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFG
        ALRRLGVK VEI +PEQLLNVA LIIP GESTTMAKL ELHNLFP LREFVRMG      C     AGLI LAN+ATGQKT GQE VGGLDCTVHRNFFG
Subjt:  ALRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGS--LSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFG

Query:  SQV
        SQ+
Subjt:  SQV

A0A6J1FUQ8 Glutaminase

2.3e-32

76.7

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Query:  ALRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGS--LSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFG
        ALRRLGVK VEI +PEQLLNVA LIIP GESTTMAKL +LHNLFP LREFVRMG      C     AGLI LAN+ATGQKT GQE VGGLDCTVHRNFFG
Subjt:  ALRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGS--LSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFG

Query:  SQV
        SQ+
Subjt:  SQV

A0A6J1H276 Glutaminase

5.0e-32

75.73

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Query:  ALRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGS--LSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFG
        +LRRLGVK VEI +PEQLL+VA LIIP GESTTMAKL ELHNLFP+LREFVRMG      C     AGLI LAN+ATGQKT GQE VGGLDCTVHRNFFG
Subjt:  ALRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGS--LSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFG

Query:  SQV
        SQ+
Subjt:  SQV

A0A6J1H447 Glutaminase

2.3e-32

76.7

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Query:  ALRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGS--LSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFG
        ALRRLGVK VEI +PEQLL+VA LIIP GESTTMAKL ELHNLFP+LREFVRMG      C     AGLI LAN+ATGQKT GQE VGGLDCTVHRNFFG
Subjt:  ALRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGS--LSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFG

Query:  SQV
        SQ+
Subjt:  SQV

A0A6J1JFE0 Glutaminase

2.3e-32

76.7

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Query:  ALRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGS--LSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFG
        ALRRLGVK VEI +PEQLLNVA LIIP GESTTMAKL +LHNLFP LREFVRMG      C     AGLI LAN+ATGQKT GQE VGGLDCTVHRNFFG
Subjt:  ALRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGS--LSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFG

Query:  SQV
        SQ+
Subjt:  SQV

SwissProt top hits

e value

%identity

Alignment

A1SJA2 Pyridoxal 5'-phosphate synthase subunit PdxT

2.5e-12

44.12

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Query:  LRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMG--SLSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFGS
        L  LGV+ + +  P +L   A L+IP GESTTMAKL    +LF  +R+ ++ G  +   C     AG+I+LA+      TR QE +GGLD TV RN FG 
Subjt:  LRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMG--SLSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFGS

Query:  QV
        QV
Subjt:  QV

A9WFU0 Pyridoxal 5'-phosphate synthase subunit PdxT

3.6e-11

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Query:  LRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGSLSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFGSQV
        LRR+GV+ +E+  P QL  V  LIIP GESTT+ +L+ ++ +   +R   R G   A  G   AG ILLA+  T QK  GQ  +  ++ T+ RN +GSQ+
Subjt:  LRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGSLSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFGSQV

B8G664 Pyridoxal 5'-phosphate synthase subunit PdxT

8.6e-13

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Query:  LRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGSLSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFGSQV
        LRR+GV+ +E+  P QL  V  LIIP GESTT+ +L+ ++ +   +R     G     +    AG ILLANE   QK  GQ  +G ++ T+ RN +GSQ+
Subjt:  LRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGSLSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFGSQV

B9LIK4 Pyridoxal 5'-phosphate synthase subunit PdxT

3.6e-11

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Query:  LRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGSLSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFGSQV
        LRR+GV+ +E+  P QL  V  LIIP GESTT+ +L+ ++ +   +R   R G   A  G   AG ILLA+  T QK  GQ  +  ++ T+ RN +GSQ+
Subjt:  LRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGSLSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFGSQV

Q8LAD0 Probable pyridoxal 5'-phosphate synthase subunit PDX2

7.8e-30

67.96

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Query:  ALRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGS--LSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFG
        ALRRLGV+ VEI + +QLL V+ LIIP GESTTMAKL E HNLFP LREFV+MG      C     AGLI LA+ A GQK  GQE VGGLDCTVHRNFFG
Subjt:  ALRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGS--LSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFG

Query:  SQV
        SQ+
Subjt:  SQV

Arabidopsis top hits

e value

%identity

Alignment

AT1G48600.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

2.3e-05

66.67

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Query:  MLLDLNAFDLDKEERPLVLSLLPLCEGKLMLEHGVG
        M+LD  A DLDKEERP VLSL+P  EGK +LE G G
Subjt:  MLLDLNAFDLDKEERPLVLSLLPLCEGKLMLEHGVG

AT1G48600.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

2.3e-05

66.67

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Query:  MLLDLNAFDLDKEERPLVLSLLPLCEGKLMLEHGVG
        M+LD  A DLDKEERP VLSL+P  EGK +LE G G
Subjt:  MLLDLNAFDLDKEERPLVLSLLPLCEGKLMLEHGVG

AT1G73600.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

2.0e-04

58.33

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Query:  MLLDLNAFDLDKEERPLVLSLLPLCEGKLMLEHGVG
        M+LD  A DLDKEERP +L+ LP  EG  +LE G G
Subjt:  MLLDLNAFDLDKEERPLVLSLLPLCEGKLMLEHGVG

AT3G18000.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

1.4e-05

69.44

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Query:  MLLDLNAFDLDKEERPLVLSLLPLCEGKLMLEHGVG
        M+LD  A DLDKEERP VLSLLP  EGK +LE G G
Subjt:  MLLDLNAFDLDKEERPLVLSLLPLCEGKLMLEHGVG

AT5G60540.1 pyridoxine biosynthesis 2

5.5e-31

67.96

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Query:  ALRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGS--LSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFG
        ALRRLGV+ VEI + +QLL V+ LIIP GESTTMAKL E HNLFP LREFV+MG      C     AGLI LA+ A GQK  GQE VGGLDCTVHRNFFG
Subjt:  ALRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGS--LSACLGHLYAGLILLANEATGQKTRGQEFVGGLDCTVHRNFFG

Query:  SQV
        SQ+
Subjt:  SQV

Sequences

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CDS sequence

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ATGCTGCTCGATTTGAACGCCTTCGATCTCGACAAAGAAGAAAGGCCTTTAGTGCTTTCTCTACTTCCGCTGTGTGAAGGAAAATTGATGCTGGAACATGGAGTCGGCTT
TGCTTTGAGAAGGCTCGGAGTGAAGAGAGTAGAGATATGGGAGCCCGAGCAACTTCTTAATGTAGCGTGTTTAATTATTCCTAGCGGGGAAAGCACCACCATGGCCAAAC
TTGTGGAGCTCCATAATTTGTTTCCTACTTTGCGAGAGTTCGTTAGAATGGGAAGCCTGTCTGCCTGTCTGGGGCACCTGTATGCCGGGCTTATTCTTTTGGCAAATGAA
GCTACTGGACAAAAAACCAGAGGACAGGAATTTGTTGGAGGCCTAGATTGTACTGTTCACAGAAACTTCTTTGGCAGTCAGGTGGGCTTTCGTGGTGGTCGTGGTTCCAG
ATCTGACAACGACATTTCTCTTCTCGTCTCTGTTCGTCGGTACGAATTAGTGGTGGTCGTGGCCGTTTGTGCGTAG

mRNA sequence

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Protein sequence

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MLLDLNAFDLDKEERPLVLSLLPLCEGKLMLEHGVGFALRRLGVKRVEIWEPEQLLNVACLIIPSGESTTMAKLVELHNLFPTLREFVRMGSLSACLGHLYAGLILLANE
ATGQKTRGQEFVGGLDCTVHRNFFGSQVGFRGGRGSRSDNDISLLVSVRRYELVVVVAVCA

Spg027735 (gene) of Sponge gourd (cylindrica) v1 genome