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Spg027742 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027742
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold7:33097272..33099135
RNA-Seq ExpressionSpg027742
SyntenySpg027742
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043321.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.0e-0940.95Show/hide
Query:  NRSKETQHEDSQTPVITNKMLRRMTESAQHEIATAENLMHGKFTSPFQQPN-KASSPDVMSVMTTDAGTSEEHMVEVEKKISMLLKMVEEKDYEIAFLKS
        +RS+E Q  +   P    K+  ++++  + E+   EN    +  S  ++ N +AS P++MSVM TD  TSE+ M E+EKK++ML+K VEE+D+EIA LK+
Subjt:  NRSKETQHEDSQTPVITNKMLRRMTESAQHEIATAENLMHGKFTSPFQQPN-KASSPDVMSVMTTDAGTSEEHMVEVEKKISMLLKMVEEKDYEIAFLKS

Query:  QMESR
         +ESR
Subjt:  QMESR

KAA0056499.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.1e-0746.43Show/hide
Query:  RRMTESAQHEIATAENLMHGKFTSPFQQPN-KASSPDVMSVMTTDAGTSEEHMVEVEKKISMLLKMVEEKDYEIAFLKSQMESR
        R  T S   EI ++E++       PF + N KAS P++MS M TD  TSE+ MVE+EKK++ L+K V+E+D+EIA LK+ +E+R
Subjt:  RRMTESAQHEIATAENLMHGKFTSPFQQPN-KASSPDVMSVMTTDAGTSEEHMVEVEKKISMLLKMVEEKDYEIAFLKSQMESR

KAA0061094.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.3e-0846.43Show/hide
Query:  RRMTESAQHEIATAENLMHGKFTSPFQQPN-KASSPDVMSVMTTDAGTSEEHMVEVEKKISMLLKMVEEKDYEIAFLKSQMESR
        R  T +   EI ++E++      SPF++ N +A  P++M+VM TD  TSE+ M E+EKK++ML+K VEE+D+EIA LK+ +ESR
Subjt:  RRMTESAQHEIATAENLMHGKFTSPFQQPN-KASSPDVMSVMTTDAGTSEEHMVEVEKKISMLLKMVEEKDYEIAFLKSQMESR

KAA0063235.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.7e-0940Show/hide
Query:  TSSSKRSSNQQADPRDHQANNRSKETQHEDSQTPV-ITNKMLRRMTESAQHEIATAENLMHGKFTSPFQQPNKAS-SPDVMSVMTTDAGTSEEHMVEVEK
        +++SK  S+    P+ H   +RS+ETQ      P  + N +  + ++  +  I   ENL+  K  S F+  N+ +  P++MSVM TD  TS + M E+EK
Subjt:  TSSSKRSSNQQADPRDHQANNRSKETQHEDSQTPV-ITNKMLRRMTESAQHEIATAENLMHGKFTSPFQQPNKAS-SPDVMSVMTTDAGTSEEHMVEVEK

Query:  KISMLLKMVEEKDYEIAFLKSQMES
        KI+ML+K VEE+DYEIA+LK+ +ES
Subjt:  KISMLLKMVEEKDYEIAFLKSQMES

KAA0064216.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.1e-0741.11Show/hide
Query:  ITNKMLRRMTESAQHEIATAENLMHGKFTSPFQQPN-KASSPDVMSVMTTDAGTSEEHMVEVEKKISMLLKMVEEKDYEIAFLKSQMESR
        +   +  ++++  +  +   ENL   K  S  ++ N +A   ++MSVM TD   SE+ M E+EKK++ML+K+VEE+DYEIAFLK+ +ESR
Subjt:  ITNKMLRRMTESAQHEIATAENLMHGKFTSPFQQPN-KASSPDVMSVMTTDAGTSEEHMVEVEKKISMLLKMVEEKDYEIAFLKSQMESR

TrEMBL top hitse value%identityAlignment
A0A5A7TP10 Ty3-gypsy retrotransposon protein1.4e-0940.95Show/hide
Query:  NRSKETQHEDSQTPVITNKMLRRMTESAQHEIATAENLMHGKFTSPFQQPN-KASSPDVMSVMTTDAGTSEEHMVEVEKKISMLLKMVEEKDYEIAFLKS
        +RS+E Q  +   P    K+  ++++  + E+   EN    +  S  ++ N +AS P++MSVM TD  TSE+ M E+EKK++ML+K VEE+D+EIA LK+
Subjt:  NRSKETQHEDSQTPVITNKMLRRMTESAQHEIATAENLMHGKFTSPFQQPN-KASSPDVMSVMTTDAGTSEEHMVEVEKKISMLLKMVEEKDYEIAFLKS

Query:  QMESR
         +ESR
Subjt:  QMESR

A0A5A7V192 Ty3-gypsy retrotransposon protein1.6e-0846.43Show/hide
Query:  RRMTESAQHEIATAENLMHGKFTSPFQQPN-KASSPDVMSVMTTDAGTSEEHMVEVEKKISMLLKMVEEKDYEIAFLKSQMESR
        R  T +   EI ++E++      SPF++ N +A  P++M+VM TD  TSE+ M E+EKK++ML+K VEE+D+EIA LK+ +ESR
Subjt:  RRMTESAQHEIATAENLMHGKFTSPFQQPN-KASSPDVMSVMTTDAGTSEEHMVEVEKKISMLLKMVEEKDYEIAFLKSQMESR

A0A5A7VBF4 Ty3-gypsy retrotransposon protein3.2e-0940Show/hide
Query:  TSSSKRSSNQQADPRDHQANNRSKETQHEDSQTPV-ITNKMLRRMTESAQHEIATAENLMHGKFTSPFQQPNKAS-SPDVMSVMTTDAGTSEEHMVEVEK
        +++SK  S+    P+ H   +RS+ETQ      P  + N +  + ++  +  I   ENL+  K  S F+  N+ +  P++MSVM TD  TS + M E+EK
Subjt:  TSSSKRSSNQQADPRDHQANNRSKETQHEDSQTPV-ITNKMLRRMTESAQHEIATAENLMHGKFTSPFQQPNKAS-SPDVMSVMTTDAGTSEEHMVEVEK

Query:  KISMLLKMVEEKDYEIAFLKSQMES
        KI+ML+K VEE+DYEIA+LK+ +ES
Subjt:  KISMLLKMVEEKDYEIAFLKSQMES

A0A5A7VCV9 Retrotransposon gag protein1.0e-0741.11Show/hide
Query:  ITNKMLRRMTESAQHEIATAENLMHGKFTSPFQQPN-KASSPDVMSVMTTDAGTSEEHMVEVEKKISMLLKMVEEKDYEIAFLKSQMESR
        +   +  ++++  +  +   ENL   K  S  ++ N +A   ++MSVM TD   SE+ M E+EKK++ML+K+VEE+DYEIAFLK+ +ESR
Subjt:  ITNKMLRRMTESAQHEIATAENLMHGKFTSPFQQPN-KASSPDVMSVMTTDAGTSEEHMVEVEKKISMLLKMVEEKDYEIAFLKSQMESR

A0A5D3D4X3 Ty3-gypsy retrotransposon protein1.0e-0741.11Show/hide
Query:  ITNKMLRRMTESAQHEIATAENLMHGKFTSPFQQPN-KASSPDVMSVMTTDAGTSEEHMVEVEKKISMLLKMVEEKDYEIAFLKSQMESR
        +   +  ++++  +  +   ENL   K  S  ++ N +A   ++MSVM TD   SE+ M E+EKK++ML+K+VEE+DYEIAFLK+ +ESR
Subjt:  ITNKMLRRMTESAQHEIATAENLMHGKFTSPFQQPN-KASSPDVMSVMTTDAGTSEEHMVEVEKKISMLLKMVEEKDYEIAFLKSQMESR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTATTTGAACACCTTCCCCCTCGAAAAACATTGTTCACACGAGATTTCGATAGTGGAAATTTGATTCGTGGAAATGAACTTGATTTTATTGAATTTGATGTTGATGA
TCTCTTGGAACGGCCTGTTGGCTTGATGATCTCTTGGATCGGCTTGCATTCAGATTCAGAGACAGAGGCAGAGAACTCAGAGTCTAGAGCATTCTGCCAGAGTCTAGAGT
CGTCAGAAGCCAAAGAGTCCAGAGAATTCAGAAGGATTCGAGATTCAGAATTCAAAGGATTCAAGACTCAGAAGGCCGATCCAAAAGAACATCAAGCCAGCAGGCCGATC
ATCCAAGAAGATCAACAAGTCTACACGCCGATCCAAGAGATCATTAAGCCAGTAGGCCGATCATCCAAGAAGATCAACAAGCCAACAAGCTCATCCAAGAGATCATCAAA
CCAACAAGCCGATCCAAGAGATCATCAAGCCAACAATCGCTCCAAAGAAACCCAACACGAAGACAGCCAAACTCCTGTCATCACAAACAAGATGCTGAGACGCATGACAG
AATCTGCTCAACATGAAATCGCCACTGCAGAAAATCTGATGCATGGCAAATTCACTTCTCCTTTTCAGCAACCAAACAAAGCATCAAGTCCTGATGTGATGTCTGTTATG
ACGACTGATGCAGGTACTAGTGAAGAACATATGGTTGAAGTTGAGAAGAAAATTAGCATGTTACTGAAGATGGTTGAAGAGAAAGACTATGAAATTGCCTTTCTCAAAAG
CCAGATGGAGAGTAGGTGTAAAGCCCCAGGATTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTATTTGAACACCTTCCCCCTCGAAAAACATTGTTCACACGAGATTTCGATAGTGGAAATTTGATTCGTGGAAATGAACTTGATTTTATTGAATTTGATGTTGATGA
TCTCTTGGAACGGCCTGTTGGCTTGATGATCTCTTGGATCGGCTTGCATTCAGATTCAGAGACAGAGGCAGAGAACTCAGAGTCTAGAGCATTCTGCCAGAGTCTAGAGT
CGTCAGAAGCCAAAGAGTCCAGAGAATTCAGAAGGATTCGAGATTCAGAATTCAAAGGATTCAAGACTCAGAAGGCCGATCCAAAAGAACATCAAGCCAGCAGGCCGATC
ATCCAAGAAGATCAACAAGTCTACACGCCGATCCAAGAGATCATTAAGCCAGTAGGCCGATCATCCAAGAAGATCAACAAGCCAACAAGCTCATCCAAGAGATCATCAAA
CCAACAAGCCGATCCAAGAGATCATCAAGCCAACAATCGCTCCAAAGAAACCCAACACGAAGACAGCCAAACTCCTGTCATCACAAACAAGATGCTGAGACGCATGACAG
AATCTGCTCAACATGAAATCGCCACTGCAGAAAATCTGATGCATGGCAAATTCACTTCTCCTTTTCAGCAACCAAACAAAGCATCAAGTCCTGATGTGATGTCTGTTATG
ACGACTGATGCAGGTACTAGTGAAGAACATATGGTTGAAGTTGAGAAGAAAATTAGCATGTTACTGAAGATGGTTGAAGAGAAAGACTATGAAATTGCCTTTCTCAAAAG
CCAGATGGAGAGTAGGTGTAAAGCCCCAGGATTTTAA
Protein sequenceShow/hide protein sequence
MLFEHLPPRKTLFTRDFDSGNLIRGNELDFIEFDVDDLLERPVGLMISWIGLHSDSETEAENSESRAFCQSLESSEAKESREFRRIRDSEFKGFKTQKADPKEHQASRPI
IQEDQQVYTPIQEIIKPVGRSSKKINKPTSSSKRSSNQQADPRDHQANNRSKETQHEDSQTPVITNKMLRRMTESAQHEIATAENLMHGKFTSPFQQPNKASSPDVMSVM
TTDAGTSEEHMVEVEKKISMLLKMVEEKDYEIAFLKSQMESRCKAPGF