; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027754 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027754
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold7:32731803..32745970
RNA-Seq ExpressionSpg027754
SyntenySpg027754
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]1.8e-1072.34Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
        MRDCPLICTGESG   DSI L F GQDR+GSWE + TRWN LLP  R
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]1.3e-0871.11Show/hide
Query:  DCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
        DCPLI T ESG  ADS+ L FWGQDRV SWE + TRWNSLLP  R
Subjt:  DCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
KAA0049822.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-0578.79Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWE
        +RDCPLICTGESG  ADSI L FWGQDRVG W+
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWE
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]6.1e-1168.75Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRR
        +RDCPL CTGESG   DSI L FWGQDRVGSWE + TRWNS +P  R+
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRR
TYK08698.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-0549.32Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWER-SLTRWNSLLPDIRRKRRPLVAGIYCKQQGKRQNTSRTS
        +RDCPLICTGESG  ADSI L FWGQDRVG W+  +    +S  P  RR      A    + Q  R + SR S
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWER-SLTRWNSLLPDIRRKRRPLVAGIYCKQQGKRQNTSRTS
TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein8.6e-1172.34Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
        MRDCPLICTGESG   DSI L F GQDR+GSWE + TRWN LLP  R
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
A0A5A7U202 Reverse transcriptase4.9e-0678.79Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWE
        +RDCPLICTGESG  ADSI L FWGQDRVG W+
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWE
A0A5A7U2P4 Integrase catalytic domain-containing protein6.2e-0971.11Show/hide
Query:  DCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
        DCPLI T ESG  ADS+ L FWGQDRV SWE + TRWNSLLP  R
Subjt:  DCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
A0A5D3C3J6 Gag/pol protein3.0e-1168.75Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRR
        +RDCPL CTGESG   DSI L FWGQDRVGSWE + TRWNS +P  R+
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRR
A0A5D3CBX3 Reverse transcriptase4.9e-0649.32Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWER-SLTRWNSLLPDIRRKRRPLVAGIYCKQQGKRQNTSRTS
        +RDCPLICTGESG  ADSI L FWGQDRVG W+  +    +S  P  RR      A    + Q  R + SR S
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWER-SLTRWNSLLPDIRRKRRPLVAGIYCKQQGKRQNTSRTS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCAGCCGCTGGCGTTCGTTCGTGGGTTTTGCGATTTCGCTGTCTGTTCGTGGGGGGGAGGGGGTTGTCAGATCTGGAATCAACTTCTCGCGCCGACGTCCGCTTGT
TCGTAGGGGTTTTGAGATTTCGCCGCTCGTGAGGCGCCGTCGTCCATTCATTCGTGGGGTTTTTTCGCCAAGAGGAAATAGGCCGAGTCTACAGGCCAGGGAACTAGCCA
AGATTTGCGAACACGACCACTATGGCTACACCGGTATGATTCTGAGACTTCTAGAGGTAGAAGACTGGTGGGAGTCTAGAGGAAGCCTTGAGGAGAATTCTCTGAGACCC
CCATTCGGTCTTGCCCCTGAAATGGTAGGATTATTGAGTCGGCGAACTGGCCACTCTCACCCATACAAATCTAAGGACAATCCTGTTGGGTTTTATGCCCTAAAACTCGT
AGATATGGATTATGGACTCCTGTCCATGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCTGTTCGCCGACTCAATAAGTCTACCATTTTGGGGACAAGACCGAG
TGGGGAGCTGGGAACGTAGTCTTACAAGATGGAATTCACTCCTTCCCGATATTAGGCGAAAAAGGAGACCTTTAGTTGCTGGAATTTACTGCAAACAGCAAGGGAAAAGG
CAAAACACATCAAGAACGTCATACAAACCGCTGTTTTACCCAGAATCGAGCTCCAGACGCAACAGCGTCGGGACGCTAGCAAAGTTGGTGACTTTGGGAGAAAAAGTGCC
AAAATTGAAGCAATTGAAGCCCAAATCCAAGCTTGAAGCAATTGGGGGTCCAAAGAATATAATCATGAAGAAATGCCCAAAAGAAATGAAGAAGAAGGCCCAAAAATCAG
CCCAAAAAGAAGCTGAAAAATCTGGAATTTTGGGGCAGCGTCGAGACGCTACCCTTTCGTGTTGCCCAAGCCGCGTGCGCAGCAGCGTCGCGACGGTGAGCAAGGTAGCG
TCGCGACGCTACCCCTATTCCAGGCCTATAAAAGGCGCCCCAAGATTTGCAGTTGATGATTTACCTTCCTTTGAAAATGAATTAGATTTGCCTGAAATGGATAATTTTGA
TGATGATATTGAATTGCCTGACTTTGAGGATGAGCATGAAATGCATAAGAAAGATTGCTTGATAGATAATTTTGAGTCTGATCATGATTACAGTGAATCTATTGAGTCCG
ATCTTGACATTCCTGAGTGCATGAACCCTGATAATGTGAATACCTTTTATTCGTGTCCTGATGATGTATATAGCATAGAATCTGACCCAGAGGAGCTCGAATCTGTGCAT
AGTATAGAATCTGATCCTGAAATTCTTGAATTCTTTAATTCTTCTGATGATGAGTCATATGATACCTTAGTTGAATCGTTTTTTAATACTGAGTCTGAGGAATCTTCTGA
ACATGTAGATATTTTTTCTGATGAATGGACTGGCATGATTGATAGGCCAACTTTAGATCCTAGACCAGTAGATATTATAACGCTTGATGACTCTGTTAACAATTGTTTTG
AGAATAGAGATTTAGAAAAGAGATTTGATGCGGCTGATTATTTTCTGAAATGTTATTATGATAATCTCTTTAGTGAGGATGGCGTCGAGACGCTGTGTAGGCAGCGTCGC
GACGCTACCCTTTCGTGTTGCCCAAGCCGCGTGCGCAGCAGCGTCGCGACGGTGAGCAAGGTAGCGTCGCGACGCTACCCCTATTCCAGGCCTATAAAAGGCGCCCCAAG
CGTCGGGACGCTGTGCATTCAGCGTCTCGACGCTGTCGTGATTTCGTGCGGCAGTTCATTTTACGTGAGAACGTGTGCTGAAGCCCTAATGGGCGGACCGGTTCGGGTGT
TTTGGGTTGAGCTGGGACCGGTTTGGTCCAGTTCAACCCGGTTCTTGGGCGGTTCGGGATTTTCAAGGCCGGGTCGAAGCGGTTCGAGTCGGTTCGTGGATTCTAGACAA
ATTATGGAGCTGTATATGATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCAGCCGCTGGCGTTCGTTCGTGGGTTTTGCGATTTCGCTGTCTGTTCGTGGGGGGGAGGGGGTTGTCAGATCTGGAATCAACTTCTCGCGCCGACGTCCGCTTGT
TCGTAGGGGTTTTGAGATTTCGCCGCTCGTGAGGCGCCGTCGTCCATTCATTCGTGGGGTTTTTTCGCCAAGAGGAAATAGGCCGAGTCTACAGGCCAGGGAACTAGCCA
AGATTTGCGAACACGACCACTATGGCTACACCGGTATGATTCTGAGACTTCTAGAGGTAGAAGACTGGTGGGAGTCTAGAGGAAGCCTTGAGGAGAATTCTCTGAGACCC
CCATTCGGTCTTGCCCCTGAAATGGTAGGATTATTGAGTCGGCGAACTGGCCACTCTCACCCATACAAATCTAAGGACAATCCTGTTGGGTTTTATGCCCTAAAACTCGT
AGATATGGATTATGGACTCCTGTCCATGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCTGTTCGCCGACTCAATAAGTCTACCATTTTGGGGACAAGACCGAG
TGGGGAGCTGGGAACGTAGTCTTACAAGATGGAATTCACTCCTTCCCGATATTAGGCGAAAAAGGAGACCTTTAGTTGCTGGAATTTACTGCAAACAGCAAGGGAAAAGG
CAAAACACATCAAGAACGTCATACAAACCGCTGTTTTACCCAGAATCGAGCTCCAGACGCAACAGCGTCGGGACGCTAGCAAAGTTGGTGACTTTGGGAGAAAAAGTGCC
AAAATTGAAGCAATTGAAGCCCAAATCCAAGCTTGAAGCAATTGGGGGTCCAAAGAATATAATCATGAAGAAATGCCCAAAAGAAATGAAGAAGAAGGCCCAAAAATCAG
CCCAAAAAGAAGCTGAAAAATCTGGAATTTTGGGGCAGCGTCGAGACGCTACCCTTTCGTGTTGCCCAAGCCGCGTGCGCAGCAGCGTCGCGACGGTGAGCAAGGTAGCG
TCGCGACGCTACCCCTATTCCAGGCCTATAAAAGGCGCCCCAAGATTTGCAGTTGATGATTTACCTTCCTTTGAAAATGAATTAGATTTGCCTGAAATGGATAATTTTGA
TGATGATATTGAATTGCCTGACTTTGAGGATGAGCATGAAATGCATAAGAAAGATTGCTTGATAGATAATTTTGAGTCTGATCATGATTACAGTGAATCTATTGAGTCCG
ATCTTGACATTCCTGAGTGCATGAACCCTGATAATGTGAATACCTTTTATTCGTGTCCTGATGATGTATATAGCATAGAATCTGACCCAGAGGAGCTCGAATCTGTGCAT
AGTATAGAATCTGATCCTGAAATTCTTGAATTCTTTAATTCTTCTGATGATGAGTCATATGATACCTTAGTTGAATCGTTTTTTAATACTGAGTCTGAGGAATCTTCTGA
ACATGTAGATATTTTTTCTGATGAATGGACTGGCATGATTGATAGGCCAACTTTAGATCCTAGACCAGTAGATATTATAACGCTTGATGACTCTGTTAACAATTGTTTTG
AGAATAGAGATTTAGAAAAGAGATTTGATGCGGCTGATTATTTTCTGAAATGTTATTATGATAATCTCTTTAGTGAGGATGGCGTCGAGACGCTGTGTAGGCAGCGTCGC
GACGCTACCCTTTCGTGTTGCCCAAGCCGCGTGCGCAGCAGCGTCGCGACGGTGAGCAAGGTAGCGTCGCGACGCTACCCCTATTCCAGGCCTATAAAAGGCGCCCCAAG
CGTCGGGACGCTGTGCATTCAGCGTCTCGACGCTGTCGTGATTTCGTGCGGCAGTTCATTTTACGTGAGAACGTGTGCTGAAGCCCTAATGGGCGGACCGGTTCGGGTGT
TTTGGGTTGAGCTGGGACCGGTTTGGTCCAGTTCAACCCGGTTCTTGGGCGGTTCGGGATTTTCAAGGCCGGGTCGAAGCGGTTCGAGTCGGTTCGTGGATTCTAGACAA
ATTATGGAGCTGTATATGATGTAA
Protein sequenceShow/hide protein sequence
MGSRWRSFVGFAISLSVRGGEGVVRSGINFSRRRPLVRRGFEISPLVRRRRPFIRGVFSPRGNRPSLQARELAKICEHDHYGYTGMILRLLEVEDWWESRGSLEENSLRP
PFGLAPEMVGLLSRRTGHSHPYKSKDNPVGFYALKLVDMDYGLLSMRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRRKRRPLVAGIYCKQQGKR
QNTSRTSYKPLFYPESSSRRNSVGTLAKLVTLGEKVPKLKQLKPKSKLEAIGGPKNIIMKKCPKEMKKKAQKSAQKEAEKSGILGQRRDATLSCCPSRVRSSVATVSKVA
SRRYPYSRPIKGAPRFAVDDLPSFENELDLPEMDNFDDDIELPDFEDEHEMHKKDCLIDNFESDHDYSESIESDLDIPECMNPDNVNTFYSCPDDVYSIESDPEELESVH
SIESDPEILEFFNSSDDESYDTLVESFFNTESEESSEHVDIFSDEWTGMIDRPTLDPRPVDIITLDDSVNNCFENRDLEKRFDAADYFLKCYYDNLFSEDGVETLCRQRR
DATLSCCPSRVRSSVATVSKVASRRYPYSRPIKGAPSVGTLCIQRLDAVVISCGSSFYVRTCAEALMGGPVRVFWVELGPVWSSSTRFLGGSGFSRPGRSGSSRFVDSRQ
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