CuGenDBv2

Gene ID	Spg027763
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Genome location	scaffold7:32106006..32112018
RNA-Seq Expression	Spg027763
Synteny	Spg027763
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]

8.6e-31

65.12

Show/hide

Query:  KEVDNPERGEQRTSVFDRIKPPTTRPSVFQRMSMVVTKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLMLKLFDEVNSD
        +EVDN    +QRTSVFDRIKP TTR  VFQR+SM   +EENQC MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +   K F E N D
Subjt:  KEVDNPERGEQRTSVFDRIKPPTTRPSVFQRMSMVVTKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLMLKLFDEVNSD

Query:  KKLHSSNPSRMKRKFSVLINTEGSLKFLP
         K+HS  PSRMKRK SV INTEGSL   P
Subjt:  KKLHSSNPSRMKRKFSVLINTEGSLKFLP

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]

3.0e-31

65.89

Show/hide

Query:  KEVDNPERGEQRTSVFDRIKPPTTRPSVFQRMSMVVTKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLMLKLFDEVNSD
        +EVDN    +QRTSVFDRIKP TTR SVFQR+SM   +EENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L  K F E N D
Subjt:  KEVDNPERGEQRTSVFDRIKPPTTRPSVFQRMSMVVTKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLMLKLFDEVNSD

Query:  KKLHSSNPSRMKRKFSVLINTEGSLKFLP
         K+HS  PSRMKRK SV INTEGSL   P
Subjt:  KKLHSSNPSRMKRKFSVLINTEGSLKFLP

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]

1.5e-30

64.34

Show/hide

Query:  KEVDNPERGEQRTSVFDRIKPPTTRPSVFQRMSMVVTKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLMLKLFDEVNSD
        +EVDN    +QRTSVFDRIKP TTR SVFQR+SM   +EENQC MST TR SAF+RLS+S SKK R STS FDRLK+TNDQ +R+M +L  K F E N D
Subjt:  KEVDNPERGEQRTSVFDRIKPPTTRPSVFQRMSMVVTKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLMLKLFDEVNSD

Query:  KKLHSSNPSRMKRKFSVLINTEGSLKFLP
         K++S  PSR+KRK S+ INTEGSL   P
Subjt:  KKLHSSNPSRMKRKFSVLINTEGSLKFLP

KAA0063719.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

6.6e-31

65.89

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Query:  KEVDNPERGEQRTSVFDRIKPPTTRPSVFQRMSMVVTKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLMLKLFDEVNSD
        KEVDN    +QRTSVFDRIKP TTR SVFQR+SM   +EENQC  ST  R S F+RLS+STSKK R STS FDRLK+TNDQ +R+M  L  K F E N D
Subjt:  KEVDNPERGEQRTSVFDRIKPPTTRPSVFQRMSMVVTKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLMLKLFDEVNSD

Query:  KKLHSSNPSRMKRKFSVLINTEGSLKFLP
         K+HS  PSRMKRK SV INTEGSL   P
Subjt:  KKLHSSNPSRMKRKFSVLINTEGSLKFLP

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]

1.9e-30

64.34

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Query:  KEVDNPERGEQRTSVFDRIKPPTTRPSVFQRMSMVVTKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLMLKLFDEVNSD
        +EVDN    +QRTSVFDRIKP TTR SVFQR+SM   +E+NQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L  K F E N D
Subjt:  KEVDNPERGEQRTSVFDRIKPPTTRPSVFQRMSMVVTKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLMLKLFDEVNSD

Query:  KKLHSSNPSRMKRKFSVLINTEGSLKFLP
         K+H+  PSRMKRK SV INTEGSL   P
Subjt:  KKLHSSNPSRMKRKFSVLINTEGSLKFLP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SZJ7 Retrotransposon gag protein

4.2e-31

65.12

Show/hide

Query:  KEVDNPERGEQRTSVFDRIKPPTTRPSVFQRMSMVVTKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLMLKLFDEVNSD
        +EVDN    +QRTSVFDRIKP TTR  VFQR+SM   +EENQC MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +   K F E N D
Subjt:  KEVDNPERGEQRTSVFDRIKPPTTRPSVFQRMSMVVTKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLMLKLFDEVNSD

Query:  KKLHSSNPSRMKRKFSVLINTEGSLKFLP
         K+HS  PSRMKRK SV INTEGSL   P
Subjt:  KKLHSSNPSRMKRKFSVLINTEGSLKFLP

A0A5A7TQ06 Retrotransposon gag protein

1.4e-31

65.89

Show/hide

Query:  KEVDNPERGEQRTSVFDRIKPPTTRPSVFQRMSMVVTKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLMLKLFDEVNSD
        +EVDN    +QRTSVFDRIKP TTR SVFQR+SM   +EENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L  K F E N D
Subjt:  KEVDNPERGEQRTSVFDRIKPPTTRPSVFQRMSMVVTKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLMLKLFDEVNSD

Query:  KKLHSSNPSRMKRKFSVLINTEGSLKFLP
         K+HS  PSRMKRK SV INTEGSL   P
Subjt:  KKLHSSNPSRMKRKFSVLINTEGSLKFLP

A0A5A7U974 Retrotransposon gag protein

7.1e-31

64.34

Show/hide

Query:  KEVDNPERGEQRTSVFDRIKPPTTRPSVFQRMSMVVTKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLMLKLFDEVNSD
        +EVDN    +QRTSVFDRIKP TTR SVFQR+SM   +EENQC MST TR SAF+RLS+S SKK R STS FDRLK+TNDQ +R+M +L  K F E N D
Subjt:  KEVDNPERGEQRTSVFDRIKPPTTRPSVFQRMSMVVTKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLMLKLFDEVNSD

Query:  KKLHSSNPSRMKRKFSVLINTEGSLKFLP
         K++S  PSR+KRK S+ INTEGSL   P
Subjt:  KKLHSSNPSRMKRKFSVLINTEGSLKFLP

A0A5A7VDY3 Ty3-gypsy retrotransposon protein

3.2e-31

65.89

Show/hide

Query:  KEVDNPERGEQRTSVFDRIKPPTTRPSVFQRMSMVVTKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLMLKLFDEVNSD
        KEVDN    +QRTSVFDRIKP TTR SVFQR+SM   +EENQC  ST  R S F+RLS+STSKK R STS FDRLK+TNDQ +R+M  L  K F E N D
Subjt:  KEVDNPERGEQRTSVFDRIKPPTTRPSVFQRMSMVVTKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLMLKLFDEVNSD

Query:  KKLHSSNPSRMKRKFSVLINTEGSLKFLP
         K+HS  PSRMKRK SV INTEGSL   P
Subjt:  KKLHSSNPSRMKRKFSVLINTEGSLKFLP

A0A5D3BBF9 Gag protease polyprotein

9.3e-31

64.34

Show/hide

Query:  KEVDNPERGEQRTSVFDRIKPPTTRPSVFQRMSMVVTKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLMLKLFDEVNSD
        +EVDN    +QRTS+FDRIKP TTR  VFQR+SM   +EENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L  K F E N D
Subjt:  KEVDNPERGEQRTSVFDRIKPPTTRPSVFQRMSMVVTKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLMLKLFDEVNSD

Query:  KKLHSSNPSRMKRKFSVLINTEGSLKFLP
         K+HS  PSRMKRK SV INTEGSL   P
Subjt:  KKLHSSNPSRMKRKFSVLINTEGSLKFLP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGGTTCAACTGCCCATTGTTGCTTCAATGAACTGAGGTTGCAAGAAGATAAAGCTTCTATCATTGCAAGCGAAGAAACAACCTTGCAGGGGGCATATACCAATGACAA
GTTTCTTGTGAAGTATAACCCTCTATTTGAACCTGATTTTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGACTGAGATGCAAGAACACA
TCAACAACTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAAAGAAGTTGACAATCCTGAG
AGGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGTCGTGACAAAAGAAGAAAATCAATGTTC
GATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATC
AACCTAAAAGAAAGATGAACAACTTGATGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCAACCCGTCACGTATGAAGAGGAAGTTTTCTGTT
CTCATAAATACGGAAGGTTCCTTGAAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTTCTTCCCTCCAAGTTCGAAGGTTCTCACGTCGCTTCGC
TGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTACTTCGCTGCAGTTCCTTCTCTCCAAGGTCGAAGGTTCTCACGCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTC
GAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCA
GTTCCTTCCTCCAATTCGAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTCTCACGCACTTCGCTACAGTTCCTTCCCCCCAAGTTCGAAGGT
TCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGTGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGTTCCTTCCTCCTGAAGTTCGAAGGT
TCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTTGAAGGTTTCGAAGGTTCTCACGCGCTGTGATTCGTTGCAGTTCCTTCCTCCGAGTTCGAAGGTTCTCGCTGCA
CAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGT
TCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTTGAAGATTCCCTCACGCGCTTCACTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACCTTCCTC
CAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGT
TGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAATTTGAAGGTTCCCTCACGCGCTTCGCTGCTCATTCTCCAAGTTCGAAGGC
GCTTCTCGCCACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGC
TCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGCGAGTCTGGTGATCACCCCTTCAAGATACTACAGTCATCAAAGTGACTGG
TCTAGACAGGTGATGAAGTCACTGCAAGTGAATCTGATGACGACCGTTGTAGGCGAGTCGAGTCTGGTGACTACTCCTGCAGGTTACTCAGATCACCCAATAAAATGGGG
ACTGGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATGAAATAGGGGACTGGGGGGATTCAGATTTGCAGACAGAGT
CAGAGAACTCAGAGTCCAGAGCATTCTGCCAGAGTCCAGAGTCGGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAG
GCCGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGTCGATCATCCAAGAGATCAACAAGCCAACCGATCGATCAAGAAGATCAACA
AGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGTTGA

mRNA sequence

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Protein sequence

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MGSTAHCCFNELRLQEDKASIIASEETTLQGAYTNDKFLVKYNPLFEPDFDVVTVMMTETRTMEERMTEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESKEVDNPE
RGEQRTSVFDRIKPPTTRPSVFQRMSMVVTKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLMLKLFDEVNSDKKLHSSNPSRMKRKFSV
LINTEGSLKFLPHSSKVLTRFAAVSSLQVRRFSRRFAAVPSSKFEGSHVLRCSSFSPRSKVLTRCVAVLSPQVRRFTHFAAVPSPKFEGSHALRSAIPSPKFEGSHALRA
VPSSNSKVLTRFGEVPSSKSEGSHALRYSSFPPSSKVLTRFAAVPSSQFEGSHVLRCSSFPPSSKFLPPEVRRFSLASLQFLPPNLKVSKVLTRCDSLQFLPPSSKVLAA
QFLPPSSKVLMRFVATFLQVRRFSHALLQFLPPSSKVLSRAAAVPSSKFEDSLTRFTRSFSKFEGASLRCYLPPSSKVLSRAAAVPSSKFEGSLTRFARSFSKFEGASLR
CYLPPSSKVLSRAAAVPSSKFEGSLTRFAAHSPSSKALLATAPSPSSKVLLSTPLFEGSPLRFSFSKFEGSPLLLFKCLAAVDVLVPLHLQMLASLVITPSRYYSHQSDW
SRQVMKSLQVNLMTTVVGESSLVTTPAGYSDHPIKWGLGLAGVHEGESGDYPCRLLRSPNEIGDWGDSDLQTESENSESRAFCQSPESAGRSSKRINKLTSRSNRSSSQQ
ADPRDQQANRPIKKINKSAGRSSKRSTSQPIDQEDQQVSRPIIQEDQQANKPIQQIIKPTG

Spg027763 (gene) of Sponge gourd (cylindrica) v1 genome