; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027771 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027771
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold7:33989912..33996326
RNA-Seq ExpressionSpg027771
SyntenySpg027771
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]1.1e-0837.72Show/hide
Query:  KMNSNASWNSNIERGGLGWIIRDSTGSSTAFGYKQIFKPWSIKTLEMSAIKEGLKKYLELNRERMVSLIIEADATEVIRALNFECENLSDSKNVLIEVES
        K+NS ASW+    +GG+ W+I DS GSS     K++ + W +K LE  A+ EGLK YL L RE +          E+ R LN    +L +  NV+ E+  
Subjt:  KMNSNASWNSNIERGGLGWIIRDSTGSSTAFGYKQIFKPWSIKTLEMSAIKEGLKKYLELNRERMVSLIIEADATEVIRALNFECENLSDSKNVLIEVES

Query:  LATVAGVVNFSKCP
        L  +AG+++F + P
Subjt:  LATVAGVVNFSKCP

XP_021721482.1 uncharacterized protein LOC110689043 [Chenopodium quinoa]3.2e-0826.89Show/hide
Query:  VEQWWDRLSKELSEEEREIAAIICWSIWNHRSRATMKNDKPDPSSLIRNCLKM---------------------------NSNASW-NSNIERG------
        V  WW+ L KE+ E + EI   ICW+IW  R+   ++  +PD  S+I   LK+                             +  W   N++ G      
Subjt:  VEQWWDRLSKELSEEEREIAAIICWSIWNHRSRATMKNDKPDPSSLIRNCLKM---------------------------NSNASW-NSNIERG------

Query:  -GLGWIIRDSTGSSTAFGYKQIFKPWSIKTLEMSAIKEGLKKYLELNRERMVS-LIIEADATEVIRALNFECENLSDSKNVLIEVESLATVAGVVNFSKC
         GLG I RDS G         + + W +K  E  A+  G    L+L R+R +  +++E+D+  V++AL       S    ++ ++ ++A     V +S  
Subjt:  -GLGWIIRDSTGSSTAFGYKQIFKPWSIKTLEMSAIKEGLKKYLELNRERMVS-LIIEADATEVIRALNFECENLSDSKNVLIEVESLATVAGVVNFSKC

Query:  PRGANIVAHNLA
         R  N VAH LA
Subjt:  PRGANIVAHNLA

XP_021766279.1 uncharacterized protein LOC110730762 [Chenopodium quinoa]1.4e-0826.57Show/hide
Query:  WWDRLSKELSEEEREIAAIICWSIWNHRSRATMKNDKPDPSSLIRNCLKM-------------------NSNASWNS--------NIERG-------GLG
        WW+   KE  E E E    + W+IWN R++A +  +K +PSS++    K+                      A W          N++ G       G+G
Subjt:  WWDRLSKELSEEEREIAAIICWSIWNHRSRATMKNDKPDPSSLIRNCLKM-------------------NSNASWNS--------NIERG-------GLG

Query:  WIIRDSTGSSTAFGYKQIFKPWSIKTLEMSAIKEGLKKYLELNRERMVSLIIEADATEVIRALNFECENLSDSKNVLIEVESLATVAGVVNFSKCPRGAN
         +  D  G  T     Q  + W  K  E  A+  G+K  LE     +  ++IE+D  +V+ AL  + +  S    +L ++ +LA     V +S    G N
Subjt:  WIIRDSTGSSTAFGYKQIFKPWSIKTLEMSAIKEGLKKYLELNRERMVSLIIEADATEVIRALNFECENLSDSKNVLIEVESLATVAGVVNFSKCPRGAN

Query:  IVAHNLA
         VAH LA
Subjt:  IVAHNLA

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]7.7e-1027.62Show/hide
Query:  EEEREIAAIICWSIWNHRSRATMKNDKPDPSS-----------------------------LIR---------------NCLKMNSNASWNSNIERGGLG
        EEER  + II W IW  R+++  K   P+                                LIR               N  K+N+NA+W ++   GG+G
Subjt:  EEEREIAAIICWSIWNHRSRATMKNDKPDPSS-----------------------------LIR---------------NCLKMNSNASWNSNIERGGLG

Query:  WIIRDSTGSSTAFGYKQIFKPWSIKTLEMSAIKEGLKKYLELNRERMVSLIIEADATEVIRALNFECENLSDSKNVLIEVESLATVAGVVNFSKCPRGAN
        WI+RD  G       + I    +I  LE+ AI EGL+    + +E    + +E+D+ E I  L+ +C++ ++   +L E+  +     +V+     R AN
Subjt:  WIIRDSTGSSTAFGYKQIFKPWSIKTLEMSAIKEGLKKYLELNRERMVSLIIEADATEVIRALNFECENLSDSKNVLIEVESLATVAGVVNFSKCPRGAN

Query:  IVAHNLARLA
         VAH LAR A
Subjt:  IVAHNLARLA

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.4e-1128.57Show/hide
Query:  SEEEREIAAIICWSIWNHRSRATMKNDKPDPSSLIRNCLK-----------------------------------MNSNASWNSNIERGGLGWIIRDSTG
        S+E+ ++  I  W IWNHR+    + +    S++I+   K                                   +N++ASW+ +  RGG+GWIIR   G
Subjt:  SEEEREIAAIICWSIWNHRSRATMKNDKPDPSSLIRNCLK-----------------------------------MNSNASWNSNIERGGLGWIIRDSTG

Query:  SSTAFGYKQIFKPWSIKTLEMSAIKEGLKKYLELNRERMVSLIIEADATEVIRALNFECENLSDSKNVLIEVESLATVAGVVNFSKCPRGANIVAHNLAR
             G + +    ++K LE SAI EGL+    L   R   L IE D+ EV   LN + E+L+ +  V+ E+ +L     ++ F+K  R  N  AH+LA+
Subjt:  SSTAFGYKQIFKPWSIKTLEMSAIKEGLKKYLELNRERMVSLIIEADATEVIRALNFECENLSDSKNVLIEVESLATVAGVVNFSKCPRGANIVAHNLAR

Query:  LAAGLLPELV
         A+ L   ++
Subjt:  LAAGLLPELV

TrEMBL top hitse value%identityAlignment
A0A1U8KDX3 uncharacterized protein LOC1079160285.0e-0727.07Show/hide
Query:  WWDRLSKELSEEERE----IAAIICWSIWNHRSRATMKNDKPDPSSL------------------IRNCLKMNSNASWNSNIERGGLGWIIRDSTGSSTA
        WW+  S  L   E +    + A ICW++WN R+R   +N   DP S+                    N +K+N +ASWN + +  G+  + RDS G    
Subjt:  WWDRLSKELSEEERE----IAAIICWSIWNHRSRATMKNDKPDPSSL------------------IRNCLKMNSNASWNSNIERGGLGWIIRDSTGSSTA

Query:  FGYKQIFKPWSIKTLEMSAIKEGLKKYLELNRERMVSLIIEADATEVIRALNFECENLSDSKNVLIEVES-LATVAGVVNF
         G     +  S++  E  A++ G    L ++R+   ++ +E+D  E++ +L  + +N   SK +  +++S LA+V  V +F
Subjt:  FGYKQIFKPWSIKTLEMSAIKEGLKKYLELNRERMVSLIIEADATEVIRALNFECENLSDSKNVLIEVES-LATVAGVVNF

A0A6D2HZR3 RNase H domain-containing protein4.5e-0828.28Show/hide
Query:  ICWSIWNHRSRATMK------------------------------NDKPDPSSLIRN---CLKMNSNASWNSNIERGGLGWIIRDSTGSSTAFGYKQIFK
        ICW IW  R+R   +                              N +P+ S+   N    L   ++ +WN   + GGLGWI+ D+ GS  + G      
Subjt:  ICWSIWNHRSRATMK------------------------------NDKPDPSSLIRN---CLKMNSNASWNSNIERGGLGWIIRDSTGSSTAFGYKQIFK

Query:  PWSIKTLEMSAIKEGLKKYLELNRERMVSLIIEADATEVIRALNFECENLSDSKNVLIEVESLATVAGVVNFSKCPRGANIVAHNLARLA-AGLLPEL
          S    E  A++  L   LE   E   SL +++DA ++IRALN   E + +   +L ++ +LA++   ++FS  PR  N +A  +A+LA + L+P L
Subjt:  PWSIKTLEMSAIKEGLKKYLELNRERMVSLIIEADATEVIRALNFECENLSDSKNVLIEVESLATVAGVVNFSKCPRGANIVAHNLARLA-AGLLPEL

A0A6J1CP26 uncharacterized protein LOC1110134123.7e-1027.62Show/hide
Query:  EEEREIAAIICWSIWNHRSRATMKNDKPDPSS-----------------------------LIR---------------NCLKMNSNASWNSNIERGGLG
        EEER  + II W IW  R+++  K   P+                                LIR               N  K+N+NA+W ++   GG+G
Subjt:  EEEREIAAIICWSIWNHRSRATMKNDKPDPSS-----------------------------LIR---------------NCLKMNSNASWNSNIERGGLG

Query:  WIIRDSTGSSTAFGYKQIFKPWSIKTLEMSAIKEGLKKYLELNRERMVSLIIEADATEVIRALNFECENLSDSKNVLIEVESLATVAGVVNFSKCPRGAN
        WI+RD  G       + I    +I  LE+ AI EGL+    + +E    + +E+D+ E I  L+ +C++ ++   +L E+  +     +V+     R AN
Subjt:  WIIRDSTGSSTAFGYKQIFKPWSIKTLEMSAIKEGLKKYLELNRERMVSLIIEADATEVIRALNFECENLSDSKNVLIEVESLATVAGVVNFSKCPRGAN

Query:  IVAHNLARLA
         VAH LAR A
Subjt:  IVAHNLARLA

A0A6J1DNV9 uncharacterized protein LOC1110224036.8e-1228.57Show/hide
Query:  SEEEREIAAIICWSIWNHRSRATMKNDKPDPSSLIRNCLK-----------------------------------MNSNASWNSNIERGGLGWIIRDSTG
        S+E+ ++  I  W IWNHR+    + +    S++I+   K                                   +N++ASW+ +  RGG+GWIIR   G
Subjt:  SEEEREIAAIICWSIWNHRSRATMKNDKPDPSSLIRNCLK-----------------------------------MNSNASWNSNIERGGLGWIIRDSTG

Query:  SSTAFGYKQIFKPWSIKTLEMSAIKEGLKKYLELNRERMVSLIIEADATEVIRALNFECENLSDSKNVLIEVESLATVAGVVNFSKCPRGANIVAHNLAR
             G + +    ++K LE SAI EGL+    L   R   L IE D+ EV   LN + E+L+ +  V+ E+ +L     ++ F+K  R  N  AH+LA+
Subjt:  SSTAFGYKQIFKPWSIKTLEMSAIKEGLKKYLELNRERMVSLIIEADATEVIRALNFECENLSDSKNVLIEVESLATVAGVVNFSKCPRGANIVAHNLAR

Query:  LAAGLLPELV
         A+ L   ++
Subjt:  LAAGLLPELV

A0A6J1DSV1 uncharacterized protein LOC1110236082.7e-0826.05Show/hide
Query:  EEEREIAAIICWSIWNHRSRATMKNDKPDPSS-----------------------------LIR---------------NCLKMNSNASWNSNIERGGLG
        EEER  + II W IW  R+++  K    +                                LIR               N  K+N++A+W ++   GG+G
Subjt:  EEEREIAAIICWSIWNHRSRATMKNDKPDPSS-----------------------------LIR---------------NCLKMNSNASWNSNIERGGLG

Query:  WIIRDSTGSSTAFGYKQIFKPWSIKTLEMSAIKEGLKKYLE-----LNRERMVSLIIEADATEVIRALNFECENLSDSKNVLIEVESLATVAGVVNFSKC
        WI+RD  G       + I    +I  LE+ AI EGL+   +     + +E    + +E+D+ E I  L+ +C++ ++   +L E+  +     +V+    
Subjt:  WIIRDSTGSSTAFGYKQIFKPWSIKTLEMSAIKEGLKKYLE-----LNRERMVSLIIEADATEVIRALNFECENLSDSKNVLIEVESLATVAGVVNFSKC

Query:  PRGANIVAHNLARLA
         R AN VAH+LAR A
Subjt:  PRGANIVAHNLARLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.9e-0626.77Show/hide
Query:  LKMNSNASWNSNIERGGLGWIIRDSTGSSTAFGYKQIFKPWSIKTLEMSAIKEGLKKYLELNRERMVSLIIEADATEVIRALNFECENLSDSKNVLIEVE
        +K N++A+W     R G+GWI+R+ +G     G + + +  ++   E+ A++  +   L ++R     +I E+DA  ++  LN + +     +  L +++
Subjt:  LKMNSNASWNSNIERGGLGWIIRDSTGSSTAFGYKQIFKPWSIKTLEMSAIKEGLKKYLELNRERMVSLIIEADATEVIRALNFECENLSDSKNVLIEVE

Query:  SLATVAGVVNFSKCPRGANIVAHNLAR
         L      V F   PRG N VA  +AR
Subjt:  SLATVAGVVNFSKCPRGANIVAHNLAR

AT4G29090.1 Ribonuclease H-like superfamily protein2.2e-0728.57Show/hide
Query:  LKMNSNASWNSNIERGGLGWIIRDSTGSSTAFGYKQIFKPWSIKTLEMSAIKEGLKKYLELNRERMVSLIIEADATEVIRALNFECENLSDSKNVLIEVE
        +K N++A+WN + ER G+GW++R+  G     G + + K  S+   E+ A++  +   L L+R +   +I E+D+  +I  LN + E     K  + +++
Subjt:  LKMNSNASWNSNIERGGLGWIIRDSTGSSTAFGYKQIFKPWSIKTLEMSAIKEGLKKYLELNRERMVSLIIEADATEVIRALNFECENLSDSKNVLIEVE

Query:  SLATVAGVVNFSKCPRGANIVAHNLARLAAGLL
         L +    V F   PR  N +A  +AR +   L
Subjt:  SLATVAGVVNFSKCPRGANIVAHNLARLAAGLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTACCGAATGGAAAAGCTAATGTTGGGGATGACACTAAGAGACCCTATCCATTTCTGGAGATTGCGTTGTTTCGATTCTCATGTTACGACCCTTCGAATGGTTTAGT
AGCTCCAGGGCATACAATGCAGGCGGAACATGGGAATACCACGGTAATGGGGGCCTTATCCTTGCTTAGGCCTTCGCTTTTCGGGTTCTCTGTATTGCTTGGTAGGGTCC
CTATTGGAAAGATAGGGAGCATGCAGCCCATGCGATTTGGAAGTGTAAAATGGGATGGAGGGTTGGTGGAACAGTGGTGGGATAGGCTATCAAAGGAGCTAAGTGAAGAA
GAAAGGGAGATAGCAGCGATCATATGCTGGTCTATATGGAACCACAGAAGCAGAGCAACAATGAAGAATGACAAACCAGATCCCAGCAGCCTCATCAGAAATTGCTTGAA
GATGAACTCAAATGCATCTTGGAATTCAAATATAGAGAGGGGTGGGCTAGGATGGATTATCCGTGATTCAACAGGATCTTCCACCGCGTTCGGCTACAAGCAAATTTTCA
AACCTTGGTCAATCAAAACGTTGGAGATGTCAGCAATCAAAGAAGGGTTGAAGAAGTACCTGGAGCTGAATCGTGAGAGAATGGTGTCGTTGATCATTGAAGCAGACGCG
ACCGAAGTCATAAGAGCACTCAATTTCGAATGTGAAAATCTCTCTGACTCCAAGAATGTGTTGATTGAGGTCGAATCCCTAGCAACAGTAGCTGGAGTTGTAAATTTCTC
AAAATGCCCGAGAGGAGCTAACATTGTAGCGCACAACCTTGCGCGACTGGCGGCTGGATTATTGCCGGAGTTGGTGCCTGAATCTCCTGGTCTGGCCGACGAAAGAGTGA
CAGATCCTGATTCTGTTTGTTACCCGTCTGATATTTTTTGTTACCCTTCCATGCTAGAAGGGGAATTTTGTTGGTGGGAAGGTAGAATCCCAACATTTATTGGCCCCTTT
TTGGGGGATGAGTTAGGTTGTATCAGTTCTTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTACCGAATGGAAAAGCTAATGTTGGGGATGACACTAAGAGACCCTATCCATTTCTGGAGATTGCGTTGTTTCGATTCTCATGTTACGACCCTTCGAATGGTTTAGT
AGCTCCAGGGCATACAATGCAGGCGGAACATGGGAATACCACGGTAATGGGGGCCTTATCCTTGCTTAGGCCTTCGCTTTTCGGGTTCTCTGTATTGCTTGGTAGGGTCC
CTATTGGAAAGATAGGGAGCATGCAGCCCATGCGATTTGGAAGTGTAAAATGGGATGGAGGGTTGGTGGAACAGTGGTGGGATAGGCTATCAAAGGAGCTAAGTGAAGAA
GAAAGGGAGATAGCAGCGATCATATGCTGGTCTATATGGAACCACAGAAGCAGAGCAACAATGAAGAATGACAAACCAGATCCCAGCAGCCTCATCAGAAATTGCTTGAA
GATGAACTCAAATGCATCTTGGAATTCAAATATAGAGAGGGGTGGGCTAGGATGGATTATCCGTGATTCAACAGGATCTTCCACCGCGTTCGGCTACAAGCAAATTTTCA
AACCTTGGTCAATCAAAACGTTGGAGATGTCAGCAATCAAAGAAGGGTTGAAGAAGTACCTGGAGCTGAATCGTGAGAGAATGGTGTCGTTGATCATTGAAGCAGACGCG
ACCGAAGTCATAAGAGCACTCAATTTCGAATGTGAAAATCTCTCTGACTCCAAGAATGTGTTGATTGAGGTCGAATCCCTAGCAACAGTAGCTGGAGTTGTAAATTTCTC
AAAATGCCCGAGAGGAGCTAACATTGTAGCGCACAACCTTGCGCGACTGGCGGCTGGATTATTGCCGGAGTTGGTGCCTGAATCTCCTGGTCTGGCCGACGAAAGAGTGA
CAGATCCTGATTCTGTTTGTTACCCGTCTGATATTTTTTGTTACCCTTCCATGCTAGAAGGGGAATTTTGTTGGTGGGAAGGTAGAATCCCAACATTTATTGGCCCCTTT
TTGGGGGATGAGTTAGGTTGTATCAGTTCTTGGTAG
Protein sequenceShow/hide protein sequence
MLPNGKANVGDDTKRPYPFLEIALFRFSCYDPSNGLVAPGHTMQAEHGNTTVMGALSLLRPSLFGFSVLLGRVPIGKIGSMQPMRFGSVKWDGGLVEQWWDRLSKELSEE
EREIAAIICWSIWNHRSRATMKNDKPDPSSLIRNCLKMNSNASWNSNIERGGLGWIIRDSTGSSTAFGYKQIFKPWSIKTLEMSAIKEGLKKYLELNRERMVSLIIEADA
TEVIRALNFECENLSDSKNVLIEVESLATVAGVVNFSKCPRGANIVAHNLARLAAGLLPELVPESPGLADERVTDPDSVCYPSDIFCYPSMLEGEFCWWEGRIPTFIGPF
LGDELGCISSW