; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027777 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027777
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold7:34194666..34195349
RNA-Seq ExpressionSpg027777
SyntenySpg027777
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]9.9e-3839.5Show/hide
Query:  MRRTFKSAWNIP-SGLMVEKMGQNIFLFSFRMENDQNRVLRQESWLFDKFLLLLSKPIPMVKPTAMEFQFTTFWVHFCDLPMDLYNRSMVERLGNAIGQF
        ++ T K AW +      V+ +G NIFLF+F   +D+NR+LR   W FD+ L+++  P+ + KP  M+F+  + WVHF DL +   N++M  RLGNAIG F
Subjt:  MRRTFKSAWNIP-SGLMVEKMGQNIFLFSFRMENDQNRVLRQESWLFDKFLLLLSKPIPMVKPTAMEFQFTTFWVHFCDLPMDLYNRSMVERLGNAIGQF

Query:  QEYDNGGRGYGWKESLRVRVILDITRPFRRCIKVRLDESLGSVWSPIKYEKLLEICGFCGRIGHGNRDCSLFLIRDGSAPRRQEYGMWMAFTG--KSSNI
        ++ ++    + W   LRVRV  D+ +P  R IK+ LD  +G  W PI+YE+L +    CGR+ H  +DCS   +   S  +  +YG W+ F G   SSNI
Subjt:  QEYDNGGRGYGWKESLRVRVILDITRPFRRCIKVRLDESLGSVWSPIKYEKLLEICGFCGRIGHGNRDCSLFLIRDGSAPRRQEYGMWMAFTG--KSSNI

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]9.2e-4442.86Show/hide
Query:  MRRTFKSAWNIPSGLMVEKMGQNIFLFSFRMENDQNRVLRQESWLFDKFLLLLSKPIPMVKPTAMEFQFTTFWVHFCDLPMDLYNRSMVERLGNAIGQFQ
        + R    AW +   L VE +G+N+FLF F  E D NRV++   W FDK L++L KP      + +EF    FW+H  DLPM   N++M  RLGNAIG F 
Subjt:  MRRTFKSAWNIPSGLMVEKMGQNIFLFSFRMENDQNRVLRQESWLFDKFLLLLSKPIPMVKPTAMEFQFTTFWVHFCDLPMDLYNRSMVERLGNAIGQFQ

Query:  EYDNGGRGYGWKESLRVRVILDITRPFRRCIKVRLDESLGSVWSPIKYEKLLEICGFCGRIGHGNRDC-SLFLIRDGSAPRRQEYGMWMAFTGKSS
        + D   +G+ W  SLR+RV++DIT+P RR IK+ +D  +G  W PI+YE+L + C FCG IGH + DC + +L     +    EYG W+ F G  +
Subjt:  EYDNGGRGYGWKESLRVRVILDITRPFRRCIKVRLDESLGSVWSPIKYEKLLEICGFCGRIGHGNRDC-SLFLIRDGSAPRRQEYGMWMAFTGKSS

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.7e-3434.96Show/hide
Query:  MRRTFKSAWNIPSGLM-VEKMGQNIFLFSFRMENDQNRVLRQESWLFDKFLLLLSKPIPMVKPTAMEFQFTTFWVHFCDLPMDLYNRSMVERLGNAIGQF
        M+ T ++AW + +    V+ +G N+FLFSF    D+N++ +   W FD+ L+L++KP+ ++ P+ ++F     WV F DLP+    R M  RLGNA+G F
Subjt:  MRRTFKSAWNIPSGLM-VEKMGQNIFLFSFRMENDQNRVLRQESWLFDKFLLLLSKPIPMVKPTAMEFQFTTFWVHFCDLPMDLYNRSMVERLGNAIGQF

Query:  QEYDNGGRGYGWKESLRVRVILDITRPFRRCIKVRLDESLGSVWSPIKYEKLLEICGFCGRIGHGNRDCSLFLIRDGSAPRRQEYGMWMAFTG-------
        +E D       W  +LRVRV+LDI++P RR IK+ LD  +G  W PI+YE+L + C  CG                 S+ ++ +YG W+ + G       
Subjt:  QEYDNGGRGYGWKESLRVRVILDITRPFRRCIKVRLDESLGSVWSPIKYEKLLEICGFCGRIGHGNRDCSLFLIRDGSAPRRQEYGMWMAFTG-------

Query:  -----------KSSNIFCSPTTSPMG
                   KS N   S +TSP+G
Subjt:  -----------KSSNIFCSPTTSPMG

XP_028122006.1 uncharacterized protein LOC114319195 [Camellia sinensis]3.9e-3440.21Show/hide
Query:  MRRTFKSAWNIPSGLMVEKMGQNIFLFSFRMENDQNRVLRQESWLFDKFLLLLSKPIPMVKPTAMEFQFTTFWVHFCDLPMDLYNRSMVERLGNAIGQFQ
        M+ T  S W    G+ V  +G N+F+F F    D+ RVL    W FDK LL+L +  P V+P+ ++     FWVH C+LP+ L N+ + E +GNA+GQF 
Subjt:  MRRTFKSAWNIPSGLMVEKMGQNIFLFSFRMENDQNRVLRQESWLFDKFLLLLSKPIPMVKPTAMEFQFTTFWVHFCDLPMDLYNRSMVERLGNAIGQFQ

Query:  EYDNGGRGYGWKESLRVRVILDITRPFRRCIKVRLDESLGSVWSPIKYEKLLEICGFCGRIGHGNRDCSLFL-IRDGSAPRRQEYGMWM
        + D    G  W  ++R+RV LD+ +P RR +K+ L  S   +W   KYE+L   C FCGR+GH  R+C   L   DGS     +YG W+
Subjt:  EYDNGGRGYGWKESLRVRVILDITRPFRRCIKVRLDESLGSVWSPIKYEKLLEICGFCGRIGHGNRDCSLFL-IRDGSAPRRQEYGMWM

XP_028124075.1 uncharacterized protein LOC114321128 [Camellia sinensis]5.1e-3438.62Show/hide
Query:  MRRTFKSAWNIPSGLMVEKMGQNIFLFSFRMENDQNRVLRQESWLFDKFLLLLSKPIPMVKPTAMEFQFTTFWVHFCDLPMDLYNRSMVERLGNAIGQFQ
        M+ T  S W    G+ V  +G N+F+F F    D+ RVL    W FDK LL+L +  P V+P+ ++     FWVH C+LP+ L N+ + + +GNA+GQF 
Subjt:  MRRTFKSAWNIPSGLMVEKMGQNIFLFSFRMENDQNRVLRQESWLFDKFLLLLSKPIPMVKPTAMEFQFTTFWVHFCDLPMDLYNRSMVERLGNAIGQFQ

Query:  EYDNGGRGYGWKESLRVRVILDITRPFRRCIKVRLDESLGSVWSPIKYEKLLEICGFCGRIGHGNRDCSLFL-IRDGSAPRRQEYGMWM
        + D    G  W  ++R+RV +D+ +P RR +K+ L  S   +W   KYE+L   C FCGR+GH +R+C   L   DG+     +YG W+
Subjt:  EYDNGGRGYGWKESLRVRVILDITRPFRRCIKVRLDESLGSVWSPIKYEKLLEICGFCGRIGHGNRDCSLFL-IRDGSAPRRQEYGMWM

TrEMBL top hitse value%identityAlignment
A0A2N9FJK9 CCHC-type domain-containing protein6.9e-2935.98Show/hide
Query:  MRRTFKSAWNIPSGLMVEKMGQNIFLFSFRMENDQNRVLRQESWLFDKFLLLLSKPIPMVKPTAMEFQFTTFWVHFCDLPMDLYNRSMVERLGNAIGQFQ
        ++ T    W   SG++ + MG+N+FLF F+ + D  RVL    WLFD  LL+L+          + F    FWV F  +P+    +   ERLG AIG  +
Subjt:  MRRTFKSAWNIPSGLMVEKMGQNIFLFSFRMENDQNRVLRQESWLFDKFLLLLSKPIPMVKPTAMEFQFTTFWVHFCDLPMDLYNRSMVERLGNAIGQFQ

Query:  EYDNGGRGYGWKESLRVRVILDITRPFRRCIKVRLDESLGSVWSPIKYEKLLEICGFCGRIGHGNRDCSLFLIRDGS-APRRQEYGMWM
          D    G GW   LRVR+ LD+T+P +R   +    S G  W   KYE+L  +C  CG++GHG R+C L +   G+ +   + YG W+
Subjt:  EYDNGGRGYGWKESLRVRVILDITRPFRRCIKVRLDESLGSVWSPIKYEKLLEICGFCGRIGHGNRDCSLFLIRDGS-APRRQEYGMWM

A0A2N9I239 RNase H domain-containing protein2.2e-2736.36Show/hide
Query:  RTFKSAWNIPSGLMVEKMGQNIFLFSFRMENDQNRVLRQESWLFDKFLLLLSKPIPMVKPTAMEFQFTTFWVHFCDLPMDLYNRSMVERLGNAIGQFQEY
        RT K  W    G     MG N  LF F    D  RV+  E W FDK+L+LL +       + + F    FWV   DLP    N ++ E+LG+ +G+ ++ 
Subjt:  RTFKSAWNIPSGLMVEKMGQNIFLFSFRMENDQNRVLRQESWLFDKFLLLLSKPIPMVKPTAMEFQFTTFWVHFCDLPMDLYNRSMVERLGNAIGQFQEY

Query:  DNGGRGYGWKESLRVRVILDITRPFRRCIKVRLDESLGSVWSPIKYEKLLEICGFCGRIGHGNRDCSLFLIRDGS-APRRQEYGMWM
        +    G G    +RVRV++D+++P  R  KV L  S    W  +KYE+L   C +CG I HG+RDC ++L   G+ +   Q+YG WM
Subjt:  DNGGRGYGWKESLRVRVILDITRPFRRCIKVRLDESLGSVWSPIKYEKLLEICGFCGRIGHGNRDCSLFLIRDGS-APRRQEYGMWM

A0A6J1BSZ1 uncharacterized protein LOC1110054814.8e-3839.5Show/hide
Query:  MRRTFKSAWNIP-SGLMVEKMGQNIFLFSFRMENDQNRVLRQESWLFDKFLLLLSKPIPMVKPTAMEFQFTTFWVHFCDLPMDLYNRSMVERLGNAIGQF
        ++ T K AW +      V+ +G NIFLF+F   +D+NR+LR   W FD+ L+++  P+ + KP  M+F+  + WVHF DL +   N++M  RLGNAIG F
Subjt:  MRRTFKSAWNIP-SGLMVEKMGQNIFLFSFRMENDQNRVLRQESWLFDKFLLLLSKPIPMVKPTAMEFQFTTFWVHFCDLPMDLYNRSMVERLGNAIGQF

Query:  QEYDNGGRGYGWKESLRVRVILDITRPFRRCIKVRLDESLGSVWSPIKYEKLLEICGFCGRIGHGNRDCSLFLIRDGSAPRRQEYGMWMAFTG--KSSNI
        ++ ++    + W   LRVRV  D+ +P  R IK+ LD  +G  W PI+YE+L +    CGR+ H  +DCS   +   S  +  +YG W+ F G   SSNI
Subjt:  QEYDNGGRGYGWKESLRVRVILDITRPFRRCIKVRLDESLGSVWSPIKYEKLLEICGFCGRIGHGNRDCSLFLIRDGSAPRRQEYGMWMAFTG--KSSNI

A0A6J1DU55 uncharacterized protein LOC1110231354.5e-4442.86Show/hide
Query:  MRRTFKSAWNIPSGLMVEKMGQNIFLFSFRMENDQNRVLRQESWLFDKFLLLLSKPIPMVKPTAMEFQFTTFWVHFCDLPMDLYNRSMVERLGNAIGQFQ
        + R    AW +   L VE +G+N+FLF F  E D NRV++   W FDK L++L KP      + +EF    FW+H  DLPM   N++M  RLGNAIG F 
Subjt:  MRRTFKSAWNIPSGLMVEKMGQNIFLFSFRMENDQNRVLRQESWLFDKFLLLLSKPIPMVKPTAMEFQFTTFWVHFCDLPMDLYNRSMVERLGNAIGQFQ

Query:  EYDNGGRGYGWKESLRVRVILDITRPFRRCIKVRLDESLGSVWSPIKYEKLLEICGFCGRIGHGNRDC-SLFLIRDGSAPRRQEYGMWMAFTGKSS
        + D   +G+ W  SLR+RV++DIT+P RR IK+ +D  +G  W PI+YE+L + C FCG IGH + DC + +L     +    EYG W+ F G  +
Subjt:  EYDNGGRGYGWKESLRVRVILDITRPFRRCIKVRLDESLGSVWSPIKYEKLLEICGFCGRIGHGNRDC-SLFLIRDGSAPRRQEYGMWMAFTGKSS

A0A6J1DX30 uncharacterized protein LOC1110248748.4e-3534.96Show/hide
Query:  MRRTFKSAWNIPSGLM-VEKMGQNIFLFSFRMENDQNRVLRQESWLFDKFLLLLSKPIPMVKPTAMEFQFTTFWVHFCDLPMDLYNRSMVERLGNAIGQF
        M+ T ++AW + +    V+ +G N+FLFSF    D+N++ +   W FD+ L+L++KP+ ++ P+ ++F     WV F DLP+    R M  RLGNA+G F
Subjt:  MRRTFKSAWNIPSGLM-VEKMGQNIFLFSFRMENDQNRVLRQESWLFDKFLLLLSKPIPMVKPTAMEFQFTTFWVHFCDLPMDLYNRSMVERLGNAIGQF

Query:  QEYDNGGRGYGWKESLRVRVILDITRPFRRCIKVRLDESLGSVWSPIKYEKLLEICGFCGRIGHGNRDCSLFLIRDGSAPRRQEYGMWMAFTG-------
        +E D       W  +LRVRV+LDI++P RR IK+ LD  +G  W PI+YE+L + C  CG                 S+ ++ +YG W+ + G       
Subjt:  QEYDNGGRGYGWKESLRVRVILDITRPFRRCIKVRLDESLGSVWSPIKYEKLLEICGFCGRIGHGNRDCSLFLIRDGSAPRRQEYGMWMAFTG-------

Query:  -----------KSSNIFCSPTTSPMG
                   KS N   S +TSP+G
Subjt:  -----------KSSNIFCSPTTSPMG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G31430.1 unknown protein9.0e-1329.61Show/hide
Query:  FLFSFRMENDQNRVLRQESWLFDKFLLLLSKPIPMVKPTAMEFQFTTFWVHFCDLPMDLYNRSMVERLGNAIGQFQEYDNGGRGYGWKESLRVRVILDIT
        F F F +E     VLR+  W F+ +++LL +  P +      F F  FWV    +P    NR +VE +G A+GQ  + D         +  RV +  DIT
Subjt:  FLFSFRMENDQNRVLRQESWLFDKFLLLLSKPIPMVKPTAMEFQFTTFWVHFCDLPMDLYNRSMVERLGNAIGQFQEYDNGGRGYGWKESLRVRVILDIT

Query:  RPFRRCIKVRLDESLGSVWSPIKYEKLLEICGFCGRIGHGNRDCSLFLIRDG
         P R     +    + ++    +YE+L   C  CG + H   D    LI++G
Subjt:  RPFRRCIKVRLDESLGSVWSPIKYEKLLEICGFCGRIGHGNRDCSLFLIRDG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTCGTACTTTTAAGTCGGCGTGGAACATTCCTAGTGGTCTTATGGTGGAGAAGATGGGGCAAAACATTTTCCTGTTTTCTTTCAGGATGGAAAATGACCAAAATCG
TGTGCTTCGACAGGAGTCGTGGCTTTTTGATAAATTTTTGCTTCTTCTCTCGAAGCCGATTCCGATGGTCAAGCCCACTGCTATGGAGTTCCAATTCACTACCTTTTGGG
TTCACTTTTGTGATTTGCCGATGGACCTGTACAATCGATCAATGGTGGAGCGACTGGGCAATGCAATAGGCCAATTTCAAGAATACGACAATGGAGGCAGAGGGTATGGG
TGGAAGGAGAGTCTTCGTGTTCGAGTTATCCTGGATATTACCCGCCCGTTTCGTAGATGTATTAAGGTTCGGCTTGACGAGTCCCTGGGCAGTGTTTGGTCCCCCATAAA
ATATGAGAAGCTGCTGGAAATTTGCGGGTTTTGCGGAAGAATTGGGCATGGGAATCGGGATTGCTCACTTTTTCTAATAAGGGATGGATCTGCTCCACGTCGCCAAGAAT
ATGGGATGTGGATGGCATTTACCGGAAAATCCTCAAATATTTTTTGTTCTCCGACTACCAGCCCAATGGGTACGAATAGGAATTTGTCGGAAGCTTCATCGCGGCAAGTG
GGAAAAATGATCCAAAGTCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCGTCGTACTTTTAAGTCGGCGTGGAACATTCCTAGTGGTCTTATGGTGGAGAAGATGGGGCAAAACATTTTCCTGTTTTCTTTCAGGATGGAAAATGACCAAAATCG
TGTGCTTCGACAGGAGTCGTGGCTTTTTGATAAATTTTTGCTTCTTCTCTCGAAGCCGATTCCGATGGTCAAGCCCACTGCTATGGAGTTCCAATTCACTACCTTTTGGG
TTCACTTTTGTGATTTGCCGATGGACCTGTACAATCGATCAATGGTGGAGCGACTGGGCAATGCAATAGGCCAATTTCAAGAATACGACAATGGAGGCAGAGGGTATGGG
TGGAAGGAGAGTCTTCGTGTTCGAGTTATCCTGGATATTACCCGCCCGTTTCGTAGATGTATTAAGGTTCGGCTTGACGAGTCCCTGGGCAGTGTTTGGTCCCCCATAAA
ATATGAGAAGCTGCTGGAAATTTGCGGGTTTTGCGGAAGAATTGGGCATGGGAATCGGGATTGCTCACTTTTTCTAATAAGGGATGGATCTGCTCCACGTCGCCAAGAAT
ATGGGATGTGGATGGCATTTACCGGAAAATCCTCAAATATTTTTTGTTCTCCGACTACCAGCCCAATGGGTACGAATAGGAATTTGTCGGAAGCTTCATCGCGGCAAGTG
GGAAAAATGATCCAAAGTCAATAG
Protein sequenceShow/hide protein sequence
MRRTFKSAWNIPSGLMVEKMGQNIFLFSFRMENDQNRVLRQESWLFDKFLLLLSKPIPMVKPTAMEFQFTTFWVHFCDLPMDLYNRSMVERLGNAIGQFQEYDNGGRGYG
WKESLRVRVILDITRPFRRCIKVRLDESLGSVWSPIKYEKLLEICGFCGRIGHGNRDCSLFLIRDGSAPRRQEYGMWMAFTGKSSNIFCSPTTSPMGTNRNLSEASSRQV
GKMIQSQ