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Spg027784 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027784
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:32496807..32499482
RNA-Seq ExpressionSpg027784
SyntenySpg027784
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]9.4e-1850.46Show/hide
Query:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVREGQRVS----------LEEDDVRWLHAIFRAKLAGGPGGGLEP---LTPWNHSLGS
        +VEIELP+PDTLPTSAESS ++SSTW+ELY ESVH+  + +   + +  S          +  DDV WLHAIFRAK AGGPGGG+ P   ++     L  
Subjt:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVREGQRVS----------LEEDDVRWLHAIFRAKLAGGPGGGLEP---LTPWNHSLGS

Query:  SRSSRSSHF
         R   SSHF
Subjt:  SRSSRSSHF
KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]9.4e-1853.12Show/hide
Query:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVREGQRVSLEEDDVRWLHAIFRAKLAGGPGGGLEPLTPWNH
        +VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGGG+  L   +H
Subjt:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVREGQRVSLEEDDVRWLHAIFRAKLAGGPGGGLEPLTPWNH
TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]5.5e-1850Show/hide
Query:  IELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVREGQRVSLEEDDVRWLHAIFRAKLAGGPGGGLEPLTPWNHS------
        IELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G    +  DDV WLHA+FRAK  GGPGGG   +T W  S      
Subjt:  IELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVREGQRVSLEEDDVRWLHAIFRAKLAGGPGGGLEPLTPWNHS------

Query:  -LGSSRSSRSSHFLEIHGPQ
          GS R +RS+H  EI  P+
Subjt:  -LGSSRSSRSSHFLEIHGPQ
TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]9.4e-1850.46Show/hide
Query:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVREGQRVS----------LEEDDVRWLHAIFRAKLAGGPGGGLEP---LTPWNHSLGS
        +VEIELP+PDTLPTSAESS ++SSTW+ELY ESVH+  + +   + +  S          +  DDV WLHAIFRAK AGGPGGG+ P   ++     L  
Subjt:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVREGQRVS----------LEEDDVRWLHAIFRAKLAGGPGGGLEP---LTPWNHSLGS

Query:  SRSSRSSHF
         R   SSHF
Subjt:  SRSSRSSHF
TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]9.4e-1853.12Show/hide
Query:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVREGQRVSLEEDDVRWLHAIFRAKLAGGPGGGLEPLTPWNH
        +VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGGG+  L   +H
Subjt:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVREGQRVSLEEDDVRWLHAIFRAKLAGGPGGGLEPLTPWNH
TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein4.5e-1850.46Show/hide
Query:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVREGQRVS----------LEEDDVRWLHAIFRAKLAGGPGGGLEP---LTPWNHSLGS
        +VEIELP+PDTLPTSAESS ++SSTW+ELY ESVH+  + +   + +  S          +  DDV WLHAIFRAK AGGPGGG+ P   ++     L  
Subjt:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVREGQRVS----------LEEDDVRWLHAIFRAKLAGGPGGGLEP---LTPWNHSLGS

Query:  SRSSRSSHF
         R   SSHF
Subjt:  SRSSRSSHF
A0A5A7V9N3 Reverse transcriptase4.5e-1853.12Show/hide
Query:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVREGQRVSLEEDDVRWLHAIFRAKLAGGPGGGLEPLTPWNH
        +VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGGG+  L   +H
Subjt:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVREGQRVSLEEDDVRWLHAIFRAKLAGGPGGGLEPLTPWNH
A0A5D3CJX3 CCHC-type domain-containing protein2.7e-1850Show/hide
Query:  IELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVREGQRVSLEEDDVRWLHAIFRAKLAGGPGGGLEPLTPWNHS------
        IELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G    +  DDV WLHA+FRAK  GGPGGG   +T W  S      
Subjt:  IELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVREGQRVSLEEDDVRWLHAIFRAKLAGGPGGGLEPLTPWNHS------

Query:  -LGSSRSSRSSHFLEIHGPQ
          GS R +RS+H  EI  P+
Subjt:  -LGSSRSSRSSHFLEIHGPQ
A0A5D3DR18 Gag/pol protein4.5e-1850.46Show/hide
Query:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVREGQRVS----------LEEDDVRWLHAIFRAKLAGGPGGGLEP---LTPWNHSLGS
        +VEIELP+PDTLPTSAESS ++SSTW+ELY ESVH+  + +   + +  S          +  DDV WLHAIFRAK AGGPGGG+ P   ++     L  
Subjt:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVREGQRVS----------LEEDDVRWLHAIFRAKLAGGPGGGLEP---LTPWNHSLGS

Query:  SRSSRSSHF
         R   SSHF
Subjt:  SRSSRSSHF
A0A5D3DSY7 Putative Retrotransposon protein4.5e-1853.12Show/hide
Query:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVREGQRVSLEEDDVRWLHAIFRAKLAGGPGGGLEPLTPWNH
        +VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGGG+  L   +H
Subjt:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVREGQRVSLEEDDVRWLHAIFRAKLAGGPGGGLEPLTPWNH
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCGGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATAT
TGTAAATGTTTTGTTCAACGTTCGGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAG
GGGGTCTCGAACCTTTGACTCCTTGGAACCATTCTTTGGGCTCGTCACGATCCTCACGATCTTCTCACTTCCTCGAGATCCATGGCCCTCAAGTTAGCTCGAAAACTCTC
TAA
mRNA sequenceShow/hide mRNA sequence
ATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCGGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATAT
TGTAAATGTTTTGTTCAACGTTCGGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAG
GGGGTCTCGAACCTTTGACTCCTTGGAACCATTCTTTGGGCTCGTCACGATCCTCACGATCTTCTCACTTCCTCGAGATCCATGGCCCTCAAGTTAGCTCGAAAACTCTC
TAA
Protein sequenceShow/hide protein sequence
MLVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVREGQRVSLEEDDVRWLHAIFRAKLAGGPGGGLEPLTPWNHSLGSSRSSRSSHFLEIHGPQVSSKTL