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Spg027792 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027792
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:32061713..32064771
RNA-Seq ExpressionSpg027792
SyntenySpg027792
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.4e-1853.04Show/hide
Query:  VYKLNQKLYLANRLGISFSFLQ-----VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHA
        V+K NQKLYL      + S L+     VEIELPVPDTLPTSAES  ++SSTW+ELY ESVH+             ++++ NV  G    +  DDV WLHA
Subjt:  VYKLNQKLYLANRLGISFSFLQ-----VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHA

Query:  IFRAKLAGGPGGGVT
        +FRAK AGGPGGGVT
Subjt:  IFRAKLAGGPGGGVT

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-1757.14Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTRNE
        VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGGGVT  E
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTRNE

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.3e-1947.83Show/hide
Query:  VYKLNQKLYL---ANRLGI-----------SFSFLQV------EIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEG
        ++KLNQKLYL    NRL +           S S L V       IELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G
Subjt:  VYKLNQKLYL---ANRLGI-----------SFSFLQV------EIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEG

Query:  QRVSLEEDDVRWLHAIFRAKLAGGPGGGVTRNEKEKSK
            +  DDV WLHA+FRAK  GGPGGGVT  E    +
Subjt:  QRVSLEEDDVRWLHAIFRAKLAGGPGGGVTRNEKEKSK

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.4e-1853.04Show/hide
Query:  VYKLNQKLYLANRLGISFSFLQ-----VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHA
        V+K NQKLYL      + S L+     VEIELPVPDTLPTSAES  ++SSTW+ELY ESVH+             ++++ NV  G    +  DDV WLHA
Subjt:  VYKLNQKLYLANRLGISFSFLQ-----VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHA

Query:  IFRAKLAGGPGGGVT
        +FRAK AGGPGGGVT
Subjt:  IFRAKLAGGPGGGVT

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.2e-1757.14Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTRNE
        VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGGGVT  E
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTRNE

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase1.2e-1853.04Show/hide
Query:  VYKLNQKLYLANRLGISFSFLQ-----VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHA
        V+K NQKLYL      + S L+     VEIELPVPDTLPTSAES  ++SSTW+ELY ESVH+             ++++ NV  G    +  DDV WLHA
Subjt:  VYKLNQKLYLANRLGISFSFLQ-----VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHA

Query:  IFRAKLAGGPGGGVT
        +FRAK AGGPGGGVT
Subjt:  IFRAKLAGGPGGGVT

A0A5A7V9N3 Reverse transcriptase5.9e-1857.14Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTRNE
        VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGGGVT  E
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTRNE

A0A5D3CJX3 CCHC-type domain-containing protein6.3e-2047.83Show/hide
Query:  VYKLNQKLYL---ANRLGI-----------SFSFLQV------EIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEG
        ++KLNQKLYL    NRL +           S S L V       IELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G
Subjt:  VYKLNQKLYL---ANRLGI-----------SFSFLQV------EIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEG

Query:  QRVSLEEDDVRWLHAIFRAKLAGGPGGGVTRNEKEKSK
            +  DDV WLHA+FRAK  GGPGGGVT  E    +
Subjt:  QRVSLEEDDVRWLHAIFRAKLAGGPGGGVTRNEKEKSK

A0A5D3D150 Reverse transcriptase1.2e-1853.04Show/hide
Query:  VYKLNQKLYLANRLGISFSFLQ-----VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHA
        V+K NQKLYL      + S L+     VEIELPVPDTLPTSAES  ++SSTW+ELY ESVH+             ++++ NV  G    +  DDV WLHA
Subjt:  VYKLNQKLYLANRLGISFSFLQ-----VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHA

Query:  IFRAKLAGGPGGGVT
        +FRAK AGGPGGGVT
Subjt:  IFRAKLAGGPGGGVT

A0A5D3DSY7 Putative Retrotransposon protein5.9e-1857.14Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTRNE
        VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGGGVT  E
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTRNE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAACTCATTGCATAGGATACCCCGCTTGCATGTCTACTACATGGACGCTTTGGATCAATACGTCTGTATCAAATACAAAGCGGGCCGTATCTCATAGTGTTACCAG
GATAAGACTTTCGGAGCACTTTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTT
TTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGCAAATCGGTTGGGAATCTCATTTTCATTTCTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACA
CTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCG
GGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAAGAAATGAAAAAGAGAAATCAAAAC
CAAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAACTCATTGCATAGGATACCCCGCTTGCATGTCTACTACATGGACGCTTTGGATCAATACGTCTGTATCAAATACAAAGCGGGCCGTATCTCATAGTGTTACCAG
GATAAGACTTTCGGAGCACTTTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTT
TTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGCAAATCGGTTGGGAATCTCATTTTCATTTCTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACA
CTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCG
GGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAAGAAATGAAAAAGAGAAATCAAAAC
CAAGCTAA
Protein sequenceShow/hide protein sequence
MQTHCIGYPACMSTTWTLWINTSVSNTKRAVSHSVTRIRLSEHFKERVKEEEEEEFQHRIFEQTRRISGVLWCFEHSGVYKLNQKLYLANRLGISFSFLQVEIELPVPDT
LPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTRNEKEKSKPS