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Spg027808 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027808
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionNBS-LRR type resistance protein
Genome locationscaffold7:35573710..35576296
RNA-Seq ExpressionSpg027808
SyntenySpg027808
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]2.0e-0673.68Show/hide
Query:  GESGQYADSISLPFWGQDRMGSWEHNRARWNSLLPDFR
        GESGQ  DSI L F GQDR+GSWEHN  RWN LLP FR
Subjt:  GESGQYADSISLPFWGQDRMGSWEHNRARWNSLLPDFR

KAA0041324.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.5e-0978.72Show/hide
Query:  GYIPLLTLSVLRDNDAVVSAGRAPLRKYYGSAGRAPLHRRTSKRWLY
        GYI LLTLSVLRDN+ VVS  R PL K  GSAGR PLHRRTSKRWLY
Subjt:  GYIPLLTLSVLRDNDAVVSAGRAPLRKYYGSAGRAPLHRRTSKRWLY

KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]2.8e-0860.42Show/hide
Query:  ESGQYADSISLPFWGQDRMGSWEHNRARWNSLLPDFREADESGVTDTR
        ESGQ ADS+ L FWGQDR+ SWEHN  RWNSLLP FRE  +  + + +
Subjt:  ESGQYADSISLPFWGQDRMGSWEHNRARWNSLLPDFREADESGVTDTR

TYK02787.1 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein [Cucumis melo var. makuwa]4.7e-1173.08Show/hide
Query:  YRVHIGYIPLLTLSVLRDNDAVVSAGRAPLRKYYGSAGRAPLHRRTSKRWLY
        YRVH  YI LLTLSVLRDN+ ++S  R PL K  GSAGR PLHRRTSKRWLY
Subjt:  YRVHIGYIPLLTLSVLRDNDAVVSAGRAPLRKYYGSAGRAPLHRRTSKRWLY

TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]6.3e-0871.79Show/hide
Query:  GESGQYADSISLPFWGQDRMGSWEHNRARWNSLLPDFRE
        GESGQ  DSI L FWGQDR+GSWEHN  RWNS +P FR+
Subjt:  GESGQYADSISLPFWGQDRMGSWEHNRARWNSLLPDFRE

TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein9.8e-0773.68Show/hide
Query:  GESGQYADSISLPFWGQDRMGSWEHNRARWNSLLPDFR
        GESGQ  DSI L F GQDR+GSWEHN  RWN LLP FR
Subjt:  GESGQYADSISLPFWGQDRMGSWEHNRARWNSLLPDFR

A0A5A7TCY8 DNA/RNA polymerases superfamily protein7.2e-1078.72Show/hide
Query:  GYIPLLTLSVLRDNDAVVSAGRAPLRKYYGSAGRAPLHRRTSKRWLY
        GYI LLTLSVLRDN+ VVS  R PL K  GSAGR PLHRRTSKRWLY
Subjt:  GYIPLLTLSVLRDNDAVVSAGRAPLRKYYGSAGRAPLHRRTSKRWLY

A0A5A7U2P4 Integrase catalytic domain-containing protein1.4e-0860.42Show/hide
Query:  ESGQYADSISLPFWGQDRMGSWEHNRARWNSLLPDFREADESGVTDTR
        ESGQ ADS+ L FWGQDR+ SWEHN  RWNSLLP FRE  +  + + +
Subjt:  ESGQYADSISLPFWGQDRMGSWEHNRARWNSLLPDFREADESGVTDTR

A0A5D3BTJ5 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein2.3e-1173.08Show/hide
Query:  YRVHIGYIPLLTLSVLRDNDAVVSAGRAPLRKYYGSAGRAPLHRRTSKRWLY
        YRVH  YI LLTLSVLRDN+ ++S  R PL K  GSAGR PLHRRTSKRWLY
Subjt:  YRVHIGYIPLLTLSVLRDNDAVVSAGRAPLRKYYGSAGRAPLHRRTSKRWLY

A0A5D3C3J6 Gag/pol protein3.0e-0871.79Show/hide
Query:  GESGQYADSISLPFWGQDRMGSWEHNRARWNSLLPDFRE
        GESGQ  DSI L FWGQDR+GSWEHN  RWNS +P FR+
Subjt:  GESGQYADSISLPFWGQDRMGSWEHNRARWNSLLPDFRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGTGGCCAGTACGCTGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACATAATCGTGCAAGATGGAATTCACTCCTTCCCGA
CTTTAGGGAAGCAGATGAGTCTGGTGTTACGGACACTCGTGAAGGACTAACTAGTCGATATTGGTCTAGATCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGAGTGC
AACTAAAATTCCAGCGATTAAAAGGCGAGGAGGCTGCTGCGTTTTCGTTCGTTGGAGCGTTGTTAGCGAAGAACGGTCAAGTCTACAACGAAGATATTGAGCCCGAGGCT
ATATGGTACCGTGTGCACATAGGTTATATTCCGTTGTTGACATTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTAAGAAAATACTATGG
GAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGTGGGCATGCCCTACACAACGTAGATCGGTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGTGGCCAGTACGCTGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACATAATCGTGCAAGATGGAATTCACTCCTTCCCGA
CTTTAGGGAAGCAGATGAGTCTGGTGTTACGGACACTCGTGAAGGACTAACTAGTCGATATTGGTCTAGATCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGAGTGC
AACTAAAATTCCAGCGATTAAAAGGCGAGGAGGCTGCTGCGTTTTCGTTCGTTGGAGCGTTGTTAGCGAAGAACGGTCAAGTCTACAACGAAGATATTGAGCCCGAGGCT
ATATGGTACCGTGTGCACATAGGTTATATTCCGTTGTTGACATTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTAAGAAAATACTATGG
GAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGTGGGCATGCCCTACACAACGTAGATCGGTCATAG
Protein sequenceShow/hide protein sequence
MGESGQYADSISLPFWGQDRMGSWEHNRARWNSLLPDFREADESGVTDTREGLTSRYWSRSVDTENMSAVRRVQLKFQRLKGEEAAAFSFVGALLAKNGQVYNEDIEPEA
IWYRVHIGYIPLLTLSVLRDNDAVVSAGRAPLRKYYGSAGRAPLHRRTSKRWLYCGHALHNVDRS