; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027809 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027809
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold7:35291873..35297337
RNA-Seq ExpressionSpg027809
SyntenySpg027809
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]2.6e-3244.49Show/hide
Query:  KNNNVVVEKELESGQAKEISDPDVMSVMMADIGTGEERMVE-LERKVNMLMKAVPERALYDEDLQGKFK--KIEDE--DGGWTLKKLQKEGYAIPISRAG
        K N      ++E G+AK+I   D+ + +       E R VE  + K   LM     +A YD   + + K  KI DE  +   T KKLQK+GY+IP SRAG
Subjt:  KNNNVVVEKELESGQAKEISDPDVMSVMMADIGTGEERMVE-LERKVNMLMKAVPERALYDEDLQGKFK--KIEDE--DGGWTLKKLQKEGYAIPISRAG

Query:  LGYKSPEPIRITRKGKVKVADTLHITVEEIDDSEQAKEEEIDDRTYAFDRIGPSVTRSSVFQRLSTAAIEDENQHPTYGSTRPSAFQRLSMASEEKGNVH
        +GY+S EP+RIT KGK KVA+T HITVEE  DSE+ K+     R+  FDRI  S  R SVFQR+ST+  +D NQ  T  STR SAFQRL+ ++++  ++ 
Subjt:  LGYKSPEPIRITRKGKVKVADTLHITVEEIDDSEQAKEEEIDDRTYAFDRIGPSVTRSSVFQRLSTAAIEDENQHPTYGSTRPSAFQRLSMASEEKGNVH

Query:  STPTTRLSAFQRLSVATKRSEERSPILASNIKETTT
         TPTTR SAF+RLSV+  R ++++ +  SN     T
Subjt:  STPTTRLSAFQRLSVATKRSEERSPILASNIKETTT

KAA0052361.1 uncharacterized protein E6C27_scaffold207G002040 [Cucumis melo var. makuwa]1.7e-3140.28Show/hide
Query:  TEHPRREG-----KEQVKAVTLRSGKPLAERIEPSKTQVIDKNGD--KNNNVVVEKELESGQAKEISDPDVMSVMMADIGTGEERMVE-LERKVNMLMKA
        TE P  +G     +E + +     G  L  +       +  KN +  K N      ++E G+AK+I   D+ + +       E R VE  + K   LM  
Subjt:  TEHPRREG-----KEQVKAVTLRSGKPLAERIEPSKTQVIDKNGD--KNNNVVVEKELESGQAKEISDPDVMSVMMADIGTGEERMVE-LERKVNMLMKA

Query:  VPERALYDEDLQGKFK--KIEDEDGGW--TLKKLQKEGYAIPISRAGLGYKSPEPIRITRKGKVKVADTLHITVEEIDDSEQAKEEEIDDRTYAFDRIGP
           +A YD   + + K  KI DE   +  T KKLQK+GY+IP SRAG+GY+S EP+RIT KGK KVA+T HITVEE  DSE+ K++    R+  FDRI  
Subjt:  VPERALYDEDLQGKFK--KIEDEDGGW--TLKKLQKEGYAIPISRAGLGYKSPEPIRITRKGKVKVADTLHITVEEIDDSEQAKEEEIDDRTYAFDRIGP

Query:  SVTRSSVFQRLSTAAIEDENQHPTYGSTRPSAFQRLSMASEEKGNVHSTPTTRLSAFQRLSVATKRSEERSPILASNIKETTT
        S  R SVFQR+ST   +D NQ  T  STR SAFQRL+ ++++  ++  TPTTR SAF+RLSV+  R ++++ +  SN     T
Subjt:  SVTRSSVFQRLSTAAIEDENQHPTYGSTRPSAFQRLSMASEEKGNVHSTPTTRLSAFQRLSVATKRSEERSPILASNIKETTT

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]2.6e-3244.49Show/hide
Query:  KNNNVVVEKELESGQAKEISDPDVMSVMMADIGTGEERMVE-LERKVNMLMKAVPERALYDEDLQGKFK--KIEDE--DGGWTLKKLQKEGYAIPISRAG
        K N      ++E G+AK+I   D+ + +       E R VE  + K   LM     +A YD   + + K  KI DE  +   T KKLQK+GY+IP SRAG
Subjt:  KNNNVVVEKELESGQAKEISDPDVMSVMMADIGTGEERMVE-LERKVNMLMKAVPERALYDEDLQGKFK--KIEDE--DGGWTLKKLQKEGYAIPISRAG

Query:  LGYKSPEPIRITRKGKVKVADTLHITVEEIDDSEQAKEEEIDDRTYAFDRIGPSVTRSSVFQRLSTAAIEDENQHPTYGSTRPSAFQRLSMASEEKGNVH
        +GY+S EP+RIT KGK KVA+T HITVEE  DSE+ K+     R+  FDRI  S  R SVFQR+ST+  +D NQ  T  STR SAFQRL+ ++++  ++ 
Subjt:  LGYKSPEPIRITRKGKVKVADTLHITVEEIDDSEQAKEEEIDDRTYAFDRIGPSVTRSSVFQRLSTAAIEDENQHPTYGSTRPSAFQRLSMASEEKGNVH

Query:  STPTTRLSAFQRLSVATKRSEERSPILASNIKETTT
         TPTTR SAF+RLSV+  R ++++ +  SN     T
Subjt:  STPTTRLSAFQRLSVATKRSEERSPILASNIKETTT

TYK06199.1 uncharacterized protein E5676_scaffold287G00570 [Cucumis melo var. makuwa]2.6e-3244.49Show/hide
Query:  KNNNVVVEKELESGQAKEISDPDVMSVMMADIGTGEERMVE-LERKVNMLMKAVPERALYDEDLQGKFK--KIEDE--DGGWTLKKLQKEGYAIPISRAG
        K N      ++E G+AK+I   D+ + +       E R V+  + K   LM     +A YD   + + K  KI DE  +   T KKLQK+GY+IP SRAG
Subjt:  KNNNVVVEKELESGQAKEISDPDVMSVMMADIGTGEERMVE-LERKVNMLMKAVPERALYDEDLQGKFK--KIEDE--DGGWTLKKLQKEGYAIPISRAG

Query:  LGYKSPEPIRITRKGKVKVADTLHITVEEIDDSEQAKEEEIDDRTYAFDRIGPSVTRSSVFQRLSTAAIEDENQHPTYGSTRPSAFQRLSMASEEKGNVH
        +GY S EP+RIT KGKVKVA+T HITVEE  DSE+ K++    R+  FDRI  S  R SVFQR+ST+  +D NQ  T  STR SAFQRL+ ++++  ++ 
Subjt:  LGYKSPEPIRITRKGKVKVADTLHITVEEIDDSEQAKEEEIDDRTYAFDRIGPSVTRSSVFQRLSTAAIEDENQHPTYGSTRPSAFQRLSMASEEKGNVH

Query:  STPTTRLSAFQRLSVATKRSEERSPILASNIKETTT
         TPTTR SAF+RLSV+  R ++++ +  SN     T
Subjt:  STPTTRLSAFQRLSVATKRSEERSPILASNIKETTT

TYK18071.1 uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]2.6e-3244.49Show/hide
Query:  KNNNVVVEKELESGQAKEISDPDVMSVMMADIGTGEERMVE-LERKVNMLMKAVPERALYDEDLQGKFK--KIEDE--DGGWTLKKLQKEGYAIPISRAG
        K N      ++E G+AK+I   D+ + +       E R VE  + K   LM     +A YD   + + K  KI DE  +   T KKLQK+GY+IP SRAG
Subjt:  KNNNVVVEKELESGQAKEISDPDVMSVMMADIGTGEERMVE-LERKVNMLMKAVPERALYDEDLQGKFK--KIEDE--DGGWTLKKLQKEGYAIPISRAG

Query:  LGYKSPEPIRITRKGKVKVADTLHITVEEIDDSEQAKEEEIDDRTYAFDRIGPSVTRSSVFQRLSTAAIEDENQHPTYGSTRPSAFQRLSMASEEKGNVH
        +GY+S EP+RIT KGK KVA+T HITVEE  DSE+ K+     R+  FDRI  S  R SVFQR+ST+  +D NQ  T  STR SAFQRL+ ++++  ++ 
Subjt:  LGYKSPEPIRITRKGKVKVADTLHITVEEIDDSEQAKEEEIDDRTYAFDRIGPSVTRSSVFQRLSTAAIEDENQHPTYGSTRPSAFQRLSMASEEKGNVH

Query:  STPTTRLSAFQRLSVATKRSEERSPILASNIKETTT
         TPTTR SAF+RLSV+  R ++++ +  SN     T
Subjt:  STPTTRLSAFQRLSVATKRSEERSPILASNIKETTT

TrEMBL top hitse value%identityAlignment
A0A5A7TZU9 Ribonuclease H1.3e-3244.49Show/hide
Query:  KNNNVVVEKELESGQAKEISDPDVMSVMMADIGTGEERMVE-LERKVNMLMKAVPERALYDEDLQGKFK--KIEDE--DGGWTLKKLQKEGYAIPISRAG
        K N      ++E G+AK+I   D+ + +       E R VE  + K   LM     +A YD   + + K  KI DE  +   T KKLQK+GY+IP SRAG
Subjt:  KNNNVVVEKELESGQAKEISDPDVMSVMMADIGTGEERMVE-LERKVNMLMKAVPERALYDEDLQGKFK--KIEDE--DGGWTLKKLQKEGYAIPISRAG

Query:  LGYKSPEPIRITRKGKVKVADTLHITVEEIDDSEQAKEEEIDDRTYAFDRIGPSVTRSSVFQRLSTAAIEDENQHPTYGSTRPSAFQRLSMASEEKGNVH
        +GY+S EP+RIT KGK KVA+T HITVEE  DSE+ K+     R+  FDRI  S  R SVFQR+ST+  +D NQ  T  STR SAFQRL+ ++++  ++ 
Subjt:  LGYKSPEPIRITRKGKVKVADTLHITVEEIDDSEQAKEEEIDDRTYAFDRIGPSVTRSSVFQRLSTAAIEDENQHPTYGSTRPSAFQRLSMASEEKGNVH

Query:  STPTTRLSAFQRLSVATKRSEERSPILASNIKETTT
         TPTTR SAF+RLSV+  R ++++ +  SN     T
Subjt:  STPTTRLSAFQRLSVATKRSEERSPILASNIKETTT

A0A5A7UFR3 RNase H domain-containing protein8.2e-3240.28Show/hide
Query:  TEHPRREG-----KEQVKAVTLRSGKPLAERIEPSKTQVIDKNGD--KNNNVVVEKELESGQAKEISDPDVMSVMMADIGTGEERMVE-LERKVNMLMKA
        TE P  +G     +E + +     G  L  +       +  KN +  K N      ++E G+AK+I   D+ + +       E R VE  + K   LM  
Subjt:  TEHPRREG-----KEQVKAVTLRSGKPLAERIEPSKTQVIDKNGD--KNNNVVVEKELESGQAKEISDPDVMSVMMADIGTGEERMVE-LERKVNMLMKA

Query:  VPERALYDEDLQGKFK--KIEDEDGGW--TLKKLQKEGYAIPISRAGLGYKSPEPIRITRKGKVKVADTLHITVEEIDDSEQAKEEEIDDRTYAFDRIGP
           +A YD   + + K  KI DE   +  T KKLQK+GY+IP SRAG+GY+S EP+RIT KGK KVA+T HITVEE  DSE+ K++    R+  FDRI  
Subjt:  VPERALYDEDLQGKFK--KIEDEDGGW--TLKKLQKEGYAIPISRAGLGYKSPEPIRITRKGKVKVADTLHITVEEIDDSEQAKEEEIDDRTYAFDRIGP

Query:  SVTRSSVFQRLSTAAIEDENQHPTYGSTRPSAFQRLSMASEEKGNVHSTPTTRLSAFQRLSVATKRSEERSPILASNIKETTT
        S  R SVFQR+ST   +D NQ  T  STR SAFQRL+ ++++  ++  TPTTR SAF+RLSV+  R ++++ +  SN     T
Subjt:  SVTRSSVFQRLSTAAIEDENQHPTYGSTRPSAFQRLSMASEEKGNVHSTPTTRLSAFQRLSVATKRSEERSPILASNIKETTT

A0A5D3BIH8 Uncharacterized protein1.3e-3244.49Show/hide
Query:  KNNNVVVEKELESGQAKEISDPDVMSVMMADIGTGEERMVE-LERKVNMLMKAVPERALYDEDLQGKFK--KIEDE--DGGWTLKKLQKEGYAIPISRAG
        K N      ++E G+AK+I   D+ + +       E R VE  + K   LM     +A YD   + + K  KI DE  +   T KKLQK+GY+IP SRAG
Subjt:  KNNNVVVEKELESGQAKEISDPDVMSVMMADIGTGEERMVE-LERKVNMLMKAVPERALYDEDLQGKFK--KIEDE--DGGWTLKKLQKEGYAIPISRAG

Query:  LGYKSPEPIRITRKGKVKVADTLHITVEEIDDSEQAKEEEIDDRTYAFDRIGPSVTRSSVFQRLSTAAIEDENQHPTYGSTRPSAFQRLSMASEEKGNVH
        +GY+S EP+RIT KGK KVA+T HITVEE  DSE+ K+     R+  FDRI  S  R SVFQR+ST+  +D NQ  T  STR SAFQRL+ ++++  ++ 
Subjt:  LGYKSPEPIRITRKGKVKVADTLHITVEEIDDSEQAKEEEIDDRTYAFDRIGPSVTRSSVFQRLSTAAIEDENQHPTYGSTRPSAFQRLSMASEEKGNVH

Query:  STPTTRLSAFQRLSVATKRSEERSPILASNIKETTT
         TPTTR SAF+RLSV+  R ++++ +  SN     T
Subjt:  STPTTRLSAFQRLSVATKRSEERSPILASNIKETTT

A0A5D3C783 Ribonuclease H1.3e-3244.49Show/hide
Query:  KNNNVVVEKELESGQAKEISDPDVMSVMMADIGTGEERMVE-LERKVNMLMKAVPERALYDEDLQGKFK--KIEDE--DGGWTLKKLQKEGYAIPISRAG
        K N      ++E G+AK+I   D+ + +       E R V+  + K   LM     +A YD   + + K  KI DE  +   T KKLQK+GY+IP SRAG
Subjt:  KNNNVVVEKELESGQAKEISDPDVMSVMMADIGTGEERMVE-LERKVNMLMKAVPERALYDEDLQGKFK--KIEDE--DGGWTLKKLQKEGYAIPISRAG

Query:  LGYKSPEPIRITRKGKVKVADTLHITVEEIDDSEQAKEEEIDDRTYAFDRIGPSVTRSSVFQRLSTAAIEDENQHPTYGSTRPSAFQRLSMASEEKGNVH
        +GY S EP+RIT KGKVKVA+T HITVEE  DSE+ K++    R+  FDRI  S  R SVFQR+ST+  +D NQ  T  STR SAFQRL+ ++++  ++ 
Subjt:  LGYKSPEPIRITRKGKVKVADTLHITVEEIDDSEQAKEEEIDDRTYAFDRIGPSVTRSSVFQRLSTAAIEDENQHPTYGSTRPSAFQRLSMASEEKGNVH

Query:  STPTTRLSAFQRLSVATKRSEERSPILASNIKETTT
         TPTTR SAF+RLSV+  R ++++ +  SN     T
Subjt:  STPTTRLSAFQRLSVATKRSEERSPILASNIKETTT

A0A5D3D1E5 Ribonuclease H1.3e-3244.49Show/hide
Query:  KNNNVVVEKELESGQAKEISDPDVMSVMMADIGTGEERMVE-LERKVNMLMKAVPERALYDEDLQGKFK--KIEDE--DGGWTLKKLQKEGYAIPISRAG
        K N      ++E G+AK+I   D+ + +       E R VE  + K   LM     +A YD   + + K  KI DE  +   T KKLQK+GY+IP SRAG
Subjt:  KNNNVVVEKELESGQAKEISDPDVMSVMMADIGTGEERMVE-LERKVNMLMKAVPERALYDEDLQGKFK--KIEDE--DGGWTLKKLQKEGYAIPISRAG

Query:  LGYKSPEPIRITRKGKVKVADTLHITVEEIDDSEQAKEEEIDDRTYAFDRIGPSVTRSSVFQRLSTAAIEDENQHPTYGSTRPSAFQRLSMASEEKGNVH
        +GY+S EP+RIT KGK KVA+T HITVEE  DSE+ K+     R+  FDRI  S  R SVFQR+ST+  +D NQ  T  STR SAFQRL+ ++++  ++ 
Subjt:  LGYKSPEPIRITRKGKVKVADTLHITVEEIDDSEQAKEEEIDDRTYAFDRIGPSVTRSSVFQRLSTAAIEDENQHPTYGSTRPSAFQRLSMASEEKGNVH

Query:  STPTTRLSAFQRLSVATKRSEERSPILASNIKETTT
         TPTTR SAF+RLSV+  R ++++ +  SN     T
Subjt:  STPTTRLSAFQRLSVATKRSEERSPILASNIKETTT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGCTAACGCTCTTAAGAATGTGACAGTGATTAGTCATCAGCAGCCACCAGCTATGGAGTCTGCTGCAGTGGTATTGCCCCAGCAAAATAAGCAGGCTTTGCCCCA
GCAAAATTCGGGAAGTTCTCTCGAGGCGATGATGAAAGAATTTATGGCTCGTACAGATGCCGCAATTCAAAGTAATCAAGCTTCGATGAGAGCCCTGGAATTGCAAGTGG
GTCAGCTAGCTAATGAGCTAAAGGCAAGGCCTCAAGGGAAACTTCCATCTGACACTGAACACCCTAGAAGGGAAGGTAAGGAGCAGGTAAAGGCAGTTACTCTTAGGAGT
GGTAAGCCACTGGCAGAAAGAATAGAGCCTAGTAAAACCCAGGTTATAGATAAAAATGGTGATAAAAATAATAATGTTGTTGTCGAGAAAGAGTTGGAGTCTGGTCAGGC
AAAGGAGATATCAGATCCTGACGTGATGTCTGTAATGATGGCTGACATAGGTACAGGCGAAGAAAGAATGGTTGAACTGGAAAGGAAAGTCAACATGCTGATGAAGGCGG
TCCCAGAAAGGGCTCTCTACGATGAAGATCTTCAAGGAAAGTTTAAGAAAATTGAAGACGAAGATGGAGGCTGGACACTTAAGAAACTTCAGAAAGAGGGTTATGCTATA
CCCATTTCAAGAGCTGGTCTTGGATATAAGTCTCCTGAGCCGATTCGAATCACAAGAAAAGGGAAAGTGAAAGTTGCAGATACACTTCACATTACAGTGGAAGAAATCGA
TGATTCCGAACAGGCTAAAGAAGAGGAAATAGATGATAGAACTTATGCATTTGATCGCATTGGACCGTCGGTTACACGATCCTCGGTTTTCCAAAGACTGAGTACAGCTG
CAATAGAAGATGAAAATCAGCATCCAACTTATGGCTCCACACGACCTTCGGCCTTCCAAAGGCTGAGTATGGCTTCTGAGGAAAAAGGGAACGTTCATTCAACCCCTACT
ACACGACTATCAGCTTTCCAAAGGTTGAGCGTAGCCACAAAAAGGAGTGAAGAACGATCTCCTATATTAGCCTCAAACATAAAAGAGACCACTACCAAGGCAAAA
mRNA sequenceShow/hide mRNA sequence
ATGATTGCTAACGCTCTTAAGAATGTGACAGTGATTAGTCATCAGCAGCCACCAGCTATGGAGTCTGCTGCAGTGGTATTGCCCCAGCAAAATAAGCAGGCTTTGCCCCA
GCAAAATTCGGGAAGTTCTCTCGAGGCGATGATGAAAGAATTTATGGCTCGTACAGATGCCGCAATTCAAAGTAATCAAGCTTCGATGAGAGCCCTGGAATTGCAAGTGG
GTCAGCTAGCTAATGAGCTAAAGGCAAGGCCTCAAGGGAAACTTCCATCTGACACTGAACACCCTAGAAGGGAAGGTAAGGAGCAGGTAAAGGCAGTTACTCTTAGGAGT
GGTAAGCCACTGGCAGAAAGAATAGAGCCTAGTAAAACCCAGGTTATAGATAAAAATGGTGATAAAAATAATAATGTTGTTGTCGAGAAAGAGTTGGAGTCTGGTCAGGC
AAAGGAGATATCAGATCCTGACGTGATGTCTGTAATGATGGCTGACATAGGTACAGGCGAAGAAAGAATGGTTGAACTGGAAAGGAAAGTCAACATGCTGATGAAGGCGG
TCCCAGAAAGGGCTCTCTACGATGAAGATCTTCAAGGAAAGTTTAAGAAAATTGAAGACGAAGATGGAGGCTGGACACTTAAGAAACTTCAGAAAGAGGGTTATGCTATA
CCCATTTCAAGAGCTGGTCTTGGATATAAGTCTCCTGAGCCGATTCGAATCACAAGAAAAGGGAAAGTGAAAGTTGCAGATACACTTCACATTACAGTGGAAGAAATCGA
TGATTCCGAACAGGCTAAAGAAGAGGAAATAGATGATAGAACTTATGCATTTGATCGCATTGGACCGTCGGTTACACGATCCTCGGTTTTCCAAAGACTGAGTACAGCTG
CAATAGAAGATGAAAATCAGCATCCAACTTATGGCTCCACACGACCTTCGGCCTTCCAAAGGCTGAGTATGGCTTCTGAGGAAAAAGGGAACGTTCATTCAACCCCTACT
ACACGACTATCAGCTTTCCAAAGGTTGAGCGTAGCCACAAAAAGGAGTGAAGAACGATCTCCTATATTAGCCTCAAACATAAAAGAGACCACTACCAAGGCAAAA
Protein sequenceShow/hide protein sequence
MIANALKNVTVISHQQPPAMESAAVVLPQQNKQALPQQNSGSSLEAMMKEFMARTDAAIQSNQASMRALELQVGQLANELKARPQGKLPSDTEHPRREGKEQVKAVTLRS
GKPLAERIEPSKTQVIDKNGDKNNNVVVEKELESGQAKEISDPDVMSVMMADIGTGEERMVELERKVNMLMKAVPERALYDEDLQGKFKKIEDEDGGWTLKKLQKEGYAI
PISRAGLGYKSPEPIRITRKGKVKVADTLHITVEEIDDSEQAKEEEIDDRTYAFDRIGPSVTRSSVFQRLSTAAIEDENQHPTYGSTRPSAFQRLSMASEEKGNVHSTPT
TRLSAFQRLSVATKRSEERSPILASNIKETTTKAK