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Spg027815 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027815
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold7:35565434..35568388
RNA-Seq ExpressionSpg027815
SyntenySpg027815
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]3.7e-1173.33Show/hide
Query:  DCPLICMGESGQYADSISLPFWGQDRMGSWEHNRARWNSLIPDFR
        DCPLIC GESGQ  DSI L F GQDR+GSWEHN  RWN L+P FR
Subjt:  DCPLICMGESGQYADSISLPFWGQDRMGSWEHNRARWNSLIPDFR
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]6.4e-1157.14Show/hide
Query:  DCPLICMGESGQYADSISLPFWGQDRMGSWEHNRARWNSLIPDFRVADESGVTDTR
        DCPLI   ESGQ ADS+ L FWGQDR+ SWEHN  RWNSL+P FR   +  + + +
Subjt:  DCPLICMGESGQYADSISLPFWGQDRMGSWEHNRARWNSLIPDFRVADESGVTDTR
KAA0049822.1 reverse transcriptase [Cucumis melo var. makuwa]6.2e-0678.12Show/hide
Query:  DCPLICMGESGQYADSISLPFWGQDRMGSWEH
        DCPLIC GESGQ ADSI L FWGQDR+G W+H
Subjt:  DCPLICMGESGQYADSISLPFWGQDRMGSWEH
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]2.0e-1275.56Show/hide
Query:  DCPLICMGESGQYADSISLPFWGQDRMGSWEHNRARWNSLIPDFR
        DCPL C GESGQ  DSI L FWGQDR+GSWEHN  RWNS IP FR
Subjt:  DCPLICMGESGQYADSISLPFWGQDRMGSWEHNRARWNSLIPDFR
TYK08698.1 reverse transcriptase [Cucumis melo var. makuwa]6.2e-0678.12Show/hide
Query:  DCPLICMGESGQYADSISLPFWGQDRMGSWEH
        DCPLIC GESGQ ADSI L FWGQDR+G W+H
Subjt:  DCPLICMGESGQYADSISLPFWGQDRMGSWEH
TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein1.8e-1173.33Show/hide
Query:  DCPLICMGESGQYADSISLPFWGQDRMGSWEHNRARWNSLIPDFR
        DCPLIC GESGQ  DSI L F GQDR+GSWEHN  RWN L+P FR
Subjt:  DCPLICMGESGQYADSISLPFWGQDRMGSWEHNRARWNSLIPDFR
A0A5A7U202 Reverse transcriptase3.0e-0678.12Show/hide
Query:  DCPLICMGESGQYADSISLPFWGQDRMGSWEH
        DCPLIC GESGQ ADSI L FWGQDR+G W+H
Subjt:  DCPLICMGESGQYADSISLPFWGQDRMGSWEH
A0A5A7U2P4 Integrase catalytic domain-containing protein3.1e-1157.14Show/hide
Query:  DCPLICMGESGQYADSISLPFWGQDRMGSWEHNRARWNSLIPDFRVADESGVTDTR
        DCPLI   ESGQ ADS+ L FWGQDR+ SWEHN  RWNSL+P FR   +  + + +
Subjt:  DCPLICMGESGQYADSISLPFWGQDRMGSWEHNRARWNSLIPDFRVADESGVTDTR
A0A5D3C3J6 Gag/pol protein9.6e-1375.56Show/hide
Query:  DCPLICMGESGQYADSISLPFWGQDRMGSWEHNRARWNSLIPDFR
        DCPL C GESGQ  DSI L FWGQDR+GSWEHN  RWNS IP FR
Subjt:  DCPLICMGESGQYADSISLPFWGQDRMGSWEHNRARWNSLIPDFR
A0A5D3CBX3 Reverse transcriptase3.0e-0678.12Show/hide
Query:  DCPLICMGESGQYADSISLPFWGQDRMGSWEH
        DCPLIC GESGQ ADSI L FWGQDR+G W+H
Subjt:  DCPLICMGESGQYADSISLPFWGQDRMGSWEH
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTCTGTGTTCGGGGCGTTTCTGGGCACATTGGTTGAGAATCTCATTTTCATTTCTTCAGATTGTCCTTTGATTTGCATGGGTGAGAGTGGCCAGTACGCCGACTC
AATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACATAATCGTGCAAGATGGAATTCACTCATTCCCGACTTTAGGGTAGCAGATGAGTCTGGTGTTA
CGGACACTCGTGAAGGACTAACTAGTCGATATTGGTCTAAATCCGTGGACGCAGAAAATATGTCTGCAGTGAGAAGAGTGCAACTGTCCATTAGGTCCCACTGGTACTCT
CTCGGTAAAGTTCTGTCTAAGGCTCGGGGTATTTTAGTTGACGGTTTACGGAACACCTCCTACCTGGGAACTGACCCGAACATTGAGTTGAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGTCTGTGTTCGGGGCGTTTCTGGGCACATTGGTTGAGAATCTCATTTTCATTTCTTCAGATTGTCCTTTGATTTGCATGGGTGAGAGTGGCCAGTACGCCGACTC
AATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACATAATCGTGCAAGATGGAATTCACTCATTCCCGACTTTAGGGTAGCAGATGAGTCTGGTGTTA
CGGACACTCGTGAAGGACTAACTAGTCGATATTGGTCTAAATCCGTGGACGCAGAAAATATGTCTGCAGTGAGAAGAGTGCAACTGTCCATTAGGTCCCACTGGTACTCT
CTCGGTAAAGTTCTGTCTAAGGCTCGGGGTATTTTAGTTGACGGTTTACGGAACACCTCCTACCTGGGAACTGACCCGAACATTGAGTTGAATTAA
Protein sequenceShow/hide protein sequence
MLSVFGAFLGTLVENLIFISSDCPLICMGESGQYADSISLPFWGQDRMGSWEHNRARWNSLIPDFRVADESGVTDTREGLTSRYWSKSVDAENMSAVRRVQLSIRSHWYS
LGKVLSKARGILVDGLRNTSYLGTDPNIELN