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Spg027822 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027822
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:34924751..34931266
RNA-Seq ExpressionSpg027822
SyntenySpg027822
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]3.4e-2152.07Show/hide
Query:  KNWPRANRSSLQTRKLAK-----------------TLEVELPVPDTLPTFAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVGVAPH---EGKRVSLEE
        K WPR NR  LQT +L K                  +E+ELP+PDTLPT AESS S+SSTW+ELY ESV++   +LF KPS    A +   EG    +  
Subjt:  KNWPRANRSSLQTRKLAK-----------------TLEVELPVPDTLPTFAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVGVAPH---EGKRVSLEE

Query:  DDVCWLHAIFRTKLAGGPGGG
        DDVCWLHAIFR K AGGPGGG
Subjt:  DDVCWLHAIFRTKLAGGPGGG

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]5.2e-2251.56Show/hide
Query:  PRANRSSLQTRKLAKTLEVELPVPDTLPTFAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVGVAPH---EGKRVSLEEDDVCWLHAIFRTKLAGGPGG
        PR NR +L T KL KT+E+ELPVPDTLPT AESS+S+SSTW+ELY ESV++   +LF KPS V VA +   EG    +  DD+CWLHA+F  K AG PGG
Subjt:  PRANRSSLQTRKLAKTLEVELPVPDTLPTFAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVGVAPH---EGKRVSLEEDDVCWLHAIFRTKLAGGPGG

Query:  G---RQDFKRRSSGQSSRQMSSGSAYQR
        G    +  +RR   Q   Q  +    +R
Subjt:  G---RQDFKRRSSGQSSRQMSSGSAYQR

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]3.7e-2052.54Show/hide
Query:  PRANRSSLQTRKLAKT-----------------LEVELPVPDTLPTFAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVGVAPH---EGKRVSLEEDDV
        PR NRSSLQT +L KT                 +E+ELPVPDTLPT AES  S+SSTW+ELY E V++   +LF KPS V  A +   EG    +  DDV
Subjt:  PRANRSSLQTRKLAKT-----------------LEVELPVPDTLPTFAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVGVAPH---EGKRVSLEEDDV

Query:  CWLHAIFRTKLAGGPGGG
        CWLH +FR K+AGGPGGG
Subjt:  CWLHAIFRTKLAGGPGGG

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]6.8e-2259.26Show/hide
Query:  VESKVPFGMVGKLIQYPTNFMKNWPRANRSSLQTRKLAKTLEVELPVPDTLPTFAESSRSSSSTWVELYIESVYIV-------NVLLFSKPSYVGVAPHE
        VES+  FGMV KLIQYPT FM  WPR NR S QT KL KT+E+ELPVPDTLPT AESS S+SSTW+ELY ESV++         V+    P YVG    +
Subjt:  VESKVPFGMVGKLIQYPTNFMKNWPRANRSSLQTRKLAKTLEVELPVPDTLPTFAESSRSSSSTWVELYIESVYIV-------NVLLFSKPSYVGVAPHE

Query:  GKRVSLEE
        G++ SLEE
Subjt:  GKRVSLEE

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]3.4e-2152.07Show/hide
Query:  KNWPRANRSSLQTRKLAK-----------------TLEVELPVPDTLPTFAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVGVAPH---EGKRVSLEE
        K WPR NR  LQT +L K                  +E+ELP+PDTLPT AESS S+SSTW+ELY ESV++   +LF KPS    A +   EG    +  
Subjt:  KNWPRANRSSLQTRKLAK-----------------TLEVELPVPDTLPTFAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVGVAPH---EGKRVSLEE

Query:  DDVCWLHAIFRTKLAGGPGGG
        DDVCWLHAIFR K AGGPGGG
Subjt:  DDVCWLHAIFRTKLAGGPGGG

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein1.6e-2152.07Show/hide
Query:  KNWPRANRSSLQTRKLAK-----------------TLEVELPVPDTLPTFAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVGVAPH---EGKRVSLEE
        K WPR NR  LQT +L K                  +E+ELP+PDTLPT AESS S+SSTW+ELY ESV++   +LF KPS    A +   EG    +  
Subjt:  KNWPRANRSSLQTRKLAK-----------------TLEVELPVPDTLPTFAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVGVAPH---EGKRVSLEE

Query:  DDVCWLHAIFRTKLAGGPGGG
        DDVCWLHAIFR K AGGPGGG
Subjt:  DDVCWLHAIFRTKLAGGPGGG

A0A5A7UAH6 CCHC-type domain-containing protein2.5e-2251.56Show/hide
Query:  PRANRSSLQTRKLAKTLEVELPVPDTLPTFAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVGVAPH---EGKRVSLEEDDVCWLHAIFRTKLAGGPGG
        PR NR +L T KL KT+E+ELPVPDTLPT AESS+S+SSTW+ELY ESV++   +LF KPS V VA +   EG    +  DD+CWLHA+F  K AG PGG
Subjt:  PRANRSSLQTRKLAKTLEVELPVPDTLPTFAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVGVAPH---EGKRVSLEEDDVCWLHAIFRTKLAGGPGG

Query:  G---RQDFKRRSSGQSSRQMSSGSAYQR
        G    +  +RR   Q   Q  +    +R
Subjt:  G---RQDFKRRSSGQSSRQMSSGSAYQR

A0A5A7VIY9 Uncharacterized protein1.8e-2052.54Show/hide
Query:  PRANRSSLQTRKLAKT-----------------LEVELPVPDTLPTFAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVGVAPH---EGKRVSLEEDDV
        PR NRSSLQT +L KT                 +E+ELPVPDTLPT AES  S+SSTW+ELY E V++   +LF KPS V  A +   EG    +  DDV
Subjt:  PRANRSSLQTRKLAKT-----------------LEVELPVPDTLPTFAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVGVAPH---EGKRVSLEEDDV

Query:  CWLHAIFRTKLAGGPGGG
        CWLH +FR K+AGGPGGG
Subjt:  CWLHAIFRTKLAGGPGGG

A0A5D3BET3 Uncharacterized protein3.3e-2259.26Show/hide
Query:  VESKVPFGMVGKLIQYPTNFMKNWPRANRSSLQTRKLAKTLEVELPVPDTLPTFAESSRSSSSTWVELYIESVYIV-------NVLLFSKPSYVGVAPHE
        VES+  FGMV KLIQYPT FM  WPR NR S QT KL KT+E+ELPVPDTLPT AESS S+SSTW+ELY ESV++         V+    P YVG    +
Subjt:  VESKVPFGMVGKLIQYPTNFMKNWPRANRSSLQTRKLAKTLEVELPVPDTLPTFAESSRSSSSTWVELYIESVYIV-------NVLLFSKPSYVGVAPHE

Query:  GKRVSLEE
        G++ SLEE
Subjt:  GKRVSLEE

A0A5D3DR18 Gag/pol protein1.6e-2152.07Show/hide
Query:  KNWPRANRSSLQTRKLAK-----------------TLEVELPVPDTLPTFAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVGVAPH---EGKRVSLEE
        K WPR NR  LQT +L K                  +E+ELP+PDTLPT AESS S+SSTW+ELY ESV++   +LF KPS    A +   EG    +  
Subjt:  KNWPRANRSSLQTRKLAK-----------------TLEVELPVPDTLPTFAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVGVAPH---EGKRVSLEE

Query:  DDVCWLHAIFRTKLAGGPGGG
        DDVCWLHAIFR K AGGPGGG
Subjt:  DDVCWLHAIFRTKLAGGPGGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGTCTCACGCCGTTCCCCTCGCTGCGTCATTGAGCTCCAAACCATGCCTCAATTCTTCACCCTCTTTTTCTGCGATCAGATTTCGCATTCCACCGTTTCCATCCA
CGAATTCTTCACCACTTTGTTCGATATGAAACGCTCCGGTTTCCATTTGATGATTTTCTCCCTCACTGAACCCCTCGGTCACCTCCACCTTACATTTATCACCTATTCTG
GCCATGATCGCTGTGAAGCTTATGTGCCATTGCTTTTGCCTTTTGAAGAGGCGGATCCCGCCCTCATTAACTATGGAACCTTTGTCTCCATTCTTTCACAGGAATTCCTA
CGAATTGCAGTCATCTTGAATCTTCCTTATGTTGAATCAAAAGTTCCATTTGGTATGGTTGGAAAGCTTATTCAATATCCTACAAATTTCATGAAGAATTGGCCAAGAGC
AAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACATTAGAGGTCGAGCTCCCGGTGCCTGATACACTGCCAACGTTTGCTGAAAGTTCCAGATCAAGCTCCAGTA
CGTGGGTGGAGTTGTATATTGAGTCTGTTTATATTGTAAATGTTTTGTTATTTTCTAAACCGAGTTATGTCGGGGTTGCACCCCATGAGGGTAAACGAGTATCGTTAGAG
GAGGACGATGTCTGTTGGCTTCATGCCATCTTTCGGACTAAGCTAGCAGGTGGTCCGGGTGGGGGTCGTCAAGACTTCAAGCGTCGATCTAGTGGCCAGTCATCGAGGCA
GATGAGTTCGGGTAGTGCCTATCAGAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAGTCTCACGCCGTTCCCCTCGCTGCGTCATTGAGCTCCAAACCATGCCTCAATTCTTCACCCTCTTTTTCTGCGATCAGATTTCGCATTCCACCGTTTCCATCCA
CGAATTCTTCACCACTTTGTTCGATATGAAACGCTCCGGTTTCCATTTGATGATTTTCTCCCTCACTGAACCCCTCGGTCACCTCCACCTTACATTTATCACCTATTCTG
GCCATGATCGCTGTGAAGCTTATGTGCCATTGCTTTTGCCTTTTGAAGAGGCGGATCCCGCCCTCATTAACTATGGAACCTTTGTCTCCATTCTTTCACAGGAATTCCTA
CGAATTGCAGTCATCTTGAATCTTCCTTATGTTGAATCAAAAGTTCCATTTGGTATGGTTGGAAAGCTTATTCAATATCCTACAAATTTCATGAAGAATTGGCCAAGAGC
AAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACATTAGAGGTCGAGCTCCCGGTGCCTGATACACTGCCAACGTTTGCTGAAAGTTCCAGATCAAGCTCCAGTA
CGTGGGTGGAGTTGTATATTGAGTCTGTTTATATTGTAAATGTTTTGTTATTTTCTAAACCGAGTTATGTCGGGGTTGCACCCCATGAGGGTAAACGAGTATCGTTAGAG
GAGGACGATGTCTGTTGGCTTCATGCCATCTTTCGGACTAAGCTAGCAGGTGGTCCGGGTGGGGGTCGTCAAGACTTCAAGCGTCGATCTAGTGGCCAGTCATCGAGGCA
GATGAGTTCGGGTAGTGCCTATCAGAGGTAG
Protein sequenceShow/hide protein sequence
MTVSRRSPRCVIELQTMPQFFTLFFCDQISHSTVSIHEFFTTLFDMKRSGFHLMIFSLTEPLGHLHLTFITYSGHDRCEAYVPLLLPFEEADPALINYGTFVSILSQEFL
RIAVILNLPYVESKVPFGMVGKLIQYPTNFMKNWPRANRSSLQTRKLAKTLEVELPVPDTLPTFAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVGVAPHEGKRVSLE
EDDVCWLHAIFRTKLAGGPGGGRQDFKRRSSGQSSRQMSSGSAYQR