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Spg027832 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027832
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationscaffold2:37918420..37923215
RNA-Seq ExpressionSpg027832
SyntenySpg027832
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]8.7e-0773.68Show/hide
Query:  GESGQYADSISLPFWGQDRMGSWEHNRTRWNSLIPDFR
        GESGQ  DSI L F GQDR+GSWEHN TRWN L+P FR
Subjt:  GESGQYADSISLPFWGQDRMGSWEHNRTRWNSLIPDFR
KAA0026228.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.3e-0472.41Show/hide
Query:  ISLPFWGQDRMGSWEHNRTRWNSLIPDFR
        + L  WGQD++GSWEHN  RWNSLIPDFR
Subjt:  ISLPFWGQDRMGSWEHNRTRWNSLIPDFR
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]9.3e-0968.18Show/hide
Query:  ESGQYADSISLPFWGQDRMGSWEHNRTRWNSLIPDFREADECSL
        ESGQ ADS+ L FWGQDR+ SWEHN TRWNSL+P FRE  + S+
Subjt:  ESGQYADSISLPFWGQDRMGSWEHNRTRWNSLIPDFREADECSL
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]9.3e-0976.92Show/hide
Query:  GESGQYADSISLPFWGQDRMGSWEHNRTRWNSLIPDFRE
        GESGQ  DSI L FWGQDR+GSWEHN TRWNS IP FR+
Subjt:  GESGQYADSISLPFWGQDRMGSWEHNRTRWNSLIPDFRE
TYK30723.1 hypothetical protein E5676_scaffold343G00550 [Cucumis melo var. makuwa]5.3e-0472.41Show/hide
Query:  ISLPFWGQDRMGSWEHNRTRWNSLIPDFR
        + L  WGQD++GSWEHN  RWNSLIPDFR
Subjt:  ISLPFWGQDRMGSWEHNRTRWNSLIPDFR
TrEMBL top hitse value%identityAlignment
A0A5A7SJB7 Ty3-gypsy retrotransposon protein2.6e-0472.41Show/hide
Query:  ISLPFWGQDRMGSWEHNRTRWNSLIPDFR
        + L  WGQD++GSWEHN  RWNSLIPDFR
Subjt:  ISLPFWGQDRMGSWEHNRTRWNSLIPDFR
A0A5A7SPG1 Pol protein4.2e-0773.68Show/hide
Query:  GESGQYADSISLPFWGQDRMGSWEHNRTRWNSLIPDFR
        GESGQ  DSI L F GQDR+GSWEHN TRWN L+P FR
Subjt:  GESGQYADSISLPFWGQDRMGSWEHNRTRWNSLIPDFR
A0A5A7U2P4 Integrase catalytic domain-containing protein4.5e-0968.18Show/hide
Query:  ESGQYADSISLPFWGQDRMGSWEHNRTRWNSLIPDFREADECSL
        ESGQ ADS+ L FWGQDR+ SWEHN TRWNSL+P FRE  + S+
Subjt:  ESGQYADSISLPFWGQDRMGSWEHNRTRWNSLIPDFREADECSL
A0A5D3C3J6 Gag/pol protein4.5e-0976.92Show/hide
Query:  GESGQYADSISLPFWGQDRMGSWEHNRTRWNSLIPDFRE
        GESGQ  DSI L FWGQDR+GSWEHN TRWNS IP FR+
Subjt:  GESGQYADSISLPFWGQDRMGSWEHNRTRWNSLIPDFRE
A0A5D3E3M6 Uncharacterized protein2.6e-0472.41Show/hide
Query:  ISLPFWGQDRMGSWEHNRTRWNSLIPDFR
        + L  WGQD++GSWEHN  RWNSLIPDFR
Subjt:  ISLPFWGQDRMGSWEHNRTRWNSLIPDFR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGTGGCCAATACGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCATTCCCGA
CTTTAGGGAAGCAGATGAGTGTTCCCTTAAGTGGTTACTCCGAGTCTTGAACAAATGGCCCTACCCTCTCAATGGCACGAGAGGGTTTTTCTGTTTGATGGTTGGACCAC
AAACAGGTTGTTCATTAGAGGAGAACTGGTCCATTAGGTCCCACTGCGATTATAAGACAAGGAGGCTGCTGCGTTTTCGATCGTTGGAGCGTCGTCGGCGAAGAACGGTC
AAGTCTACAACGAAGGTTACGTCACATACCAGATGTGTATATGATGCTACATACCACTCAGGACAACCCGACACGAGTCCAGAAATAGGACCGGAGGATGGACATCGGAG
GCGAAACGGACTAATGGGTCGGGCAAAGGCCGAAGGGATCGGGCTTTTGGCCCGACCCCCTGCTCGGCCTCGGCCATGGGTCGAGGTTGAGCTCGTCATGGCCGAGGCCG
AGCTCGTCCGACTCCGTTTGGTCCCCGATGCTCCTGGCCACCCCGGTTCCACCTGGTTCAACCCGAAACGCCTCCTAATTCCTAAAAACCTTAGGACAAGAACATGTATT
TAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGTGGCCAATACGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCATTCCCGA
CTTTAGGGAAGCAGATGAGTGTTCCCTTAAGTGGTTACTCCGAGTCTTGAACAAATGGCCCTACCCTCTCAATGGCACGAGAGGGTTTTTCTGTTTGATGGTTGGACCAC
AAACAGGTTGTTCATTAGAGGAGAACTGGTCCATTAGGTCCCACTGCGATTATAAGACAAGGAGGCTGCTGCGTTTTCGATCGTTGGAGCGTCGTCGGCGAAGAACGGTC
AAGTCTACAACGAAGGTTACGTCACATACCAGATGTGTATATGATGCTACATACCACTCAGGACAACCCGACACGAGTCCAGAAATAGGACCGGAGGATGGACATCGGAG
GCGAAACGGACTAATGGGTCGGGCAAAGGCCGAAGGGATCGGGCTTTTGGCCCGACCCCCTGCTCGGCCTCGGCCATGGGTCGAGGTTGAGCTCGTCATGGCCGAGGCCG
AGCTCGTCCGACTCCGTTTGGTCCCCGATGCTCCTGGCCACCCCGGTTCCACCTGGTTCAACCCGAAACGCCTCCTAATTCCTAAAAACCTTAGGACAAGAACATGTATT
TAA
Protein sequenceShow/hide protein sequence
MGESGQYADSISLPFWGQDRMGSWEHNRTRWNSLIPDFREADECSLKWLLRVLNKWPYPLNGTRGFFCLMVGPQTGCSLEENWSIRSHCDYKTRRLLRFRSLERRRRRTV
KSTTKVTSHTRCVYDATYHSGQPDTSPEIGPEDGHRRRNGLMGRAKAEGIGLLARPPARPRPWVEVELVMAEAELVRLRLVPDAPGHPGSTWFNPKRLLIPKNLRTRTCI