; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027889 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027889
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationscaffold2:38615390..38617337
RNA-Seq ExpressionSpg027889
SyntenySpg027889
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]2.8e-0859.62Show/hide
Query:  GESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFREADECCSLEDNWSI
        GESGQ  DSI L F GQDR+GSWEHN TRWN LLP FR   +   +E  +S+
Subjt:  GESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFREADECCSLEDNWSI
KAA0026228.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.9e-0472.41Show/hide
Query:  ISLPFWGQDRVGSWEHNRTRWNSLLPDFR
        + L  WGQD+VGSWEHN  RWNSL+PDFR
Subjt:  ISLPFWGQDRVGSWEHNRTRWNSLLPDFR
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]1.9e-0971.74Show/hide
Query:  ESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFREADECCSLE
        ESGQ ADS+ L FWGQDRV SWEHN TRWNSLLP FRE  +   LE
Subjt:  ESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFREADECCSLE
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]3.3e-0976.92Show/hide
Query:  GESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFRE
        GESGQ  DSI L FWGQDRVGSWEHN TRWNS +P FR+
Subjt:  GESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFRE
TYK30723.1 hypothetical protein E5676_scaffold343G00550 [Cucumis melo var. makuwa]1.9e-0472.41Show/hide
Query:  ISLPFWGQDRVGSWEHNRTRWNSLLPDFR
        + L  WGQD+VGSWEHN  RWNSL+PDFR
Subjt:  ISLPFWGQDRVGSWEHNRTRWNSLLPDFR
TrEMBL top hitse value%identityAlignment
A0A5A7SJB7 Ty3-gypsy retrotransposon protein9.1e-0572.41Show/hide
Query:  ISLPFWGQDRVGSWEHNRTRWNSLLPDFR
        + L  WGQD+VGSWEHN  RWNSL+PDFR
Subjt:  ISLPFWGQDRVGSWEHNRTRWNSLLPDFR
A0A5A7SPG1 Pol protein1.4e-0859.62Show/hide
Query:  GESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFREADECCSLEDNWSI
        GESGQ  DSI L F GQDR+GSWEHN TRWN LLP FR   +   +E  +S+
Subjt:  GESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFREADECCSLEDNWSI
A0A5A7U2P4 Integrase catalytic domain-containing protein9.4e-1071.74Show/hide
Query:  ESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFREADECCSLE
        ESGQ ADS+ L FWGQDRV SWEHN TRWNSLLP FRE  +   LE
Subjt:  ESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFREADECCSLE
A0A5D3C3J6 Gag/pol protein1.6e-0976.92Show/hide
Query:  GESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFRE
        GESGQ  DSI L FWGQDRVGSWEHN TRWNS +P FR+
Subjt:  GESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFRE
A0A5D3E3M6 Uncharacterized protein9.1e-0572.41Show/hide
Query:  ISLPFWGQDRVGSWEHNRTRWNSLLPDFR
        + L  WGQD+VGSWEHN  RWNSL+PDFR
Subjt:  ISLPFWGQDRVGSWEHNRTRWNSLLPDFR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGTGGCCAATACGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGTTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGA
CTTTAGGGAAGCAGATGAGTGTTGTTCATTAGAGGATAACTGGTCCATTAGGTCCCACTGCGATTATAAGACAAGGAGGTTGCTGCGATTTCGATCGTTGGAGCGTCGTT
GGCAAAGAACGGTCAAGTCTACAATGAAGATTCTGCCTCCAGACGCAACAGCGTCGGGACTCTACTCCAACAACGTCTCGACGCTGTCTCGATACCGCAGGCGCTCAGAT
AAGGAAAGCGCACAGCGTCGGGACGCTGCGATTGTAGCGTCTCGACGCTGTCACGATGGCGGCGCTCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGTGGCCAATACGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGTTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGA
CTTTAGGGAAGCAGATGAGTGTTGTTCATTAGAGGATAACTGGTCCATTAGGTCCCACTGCGATTATAAGACAAGGAGGTTGCTGCGATTTCGATCGTTGGAGCGTCGTT
GGCAAAGAACGGTCAAGTCTACAATGAAGATTCTGCCTCCAGACGCAACAGCGTCGGGACTCTACTCCAACAACGTCTCGACGCTGTCTCGATACCGCAGGCGCTCAGAT
AAGGAAAGCGCACAGCGTCGGGACGCTGCGATTGTAGCGTCTCGACGCTGTCACGATGGCGGCGCTCGTTAG
Protein sequenceShow/hide protein sequence
MGESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFREADECCSLEDNWSIRSHCDYKTRRLLRFRSLERRWQRTVKSTMKILPPDATASGLYSNNVSTLSRYRRRSD
KESAQRRDAAIVASRRCHDGGAR