; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027895 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027895
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPhotosystem II stability/assembly factor
Genome locationscaffold2:39471012..39475074
RNA-Seq ExpressionSpg027895
SyntenySpg027895
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
InterPro domainsIPR028203 - Photosynthesis system II assembly factor Ycf48/Hcf136-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058574.1 photosystem II stability/assembly factor HCF136 [Cucumis melo var. makuwa]1.3e-4475.37Show/hide
Query:  KTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQ-------
        +TILE KDG RTWAPRSIPSAEEEDFNYRFN+ISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEG +        
Subjt:  KTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQ-------

Query:  ------QE-------KTVSSGISGASYYTGNSST
              QE       +TVSSGISGASYYTG  +T
Subjt:  ------QE-------KTVSSGISGASYYTGNSST

XP_022953181.1 photosystem II stability/assembly factor HCF136, chloroplastic-like [Cucurbita moschata]5.9e-4576.12Show/hide
Query:  KTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQ-------
        +TILE KDG RTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEG +        
Subjt:  KTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQ-------

Query:  ------QE-------KTVSSGISGASYYTGNSST
              QE       +TVSSGISGASYYTG  +T
Subjt:  ------QE-------KTVSSGISGASYYTGNSST

XP_022991485.1 photosystem II stability/assembly factor HCF136, chloroplastic-like [Cucurbita maxima]5.9e-4576.12Show/hide
Query:  KTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQ-------
        +TILE KDG RTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEG +        
Subjt:  KTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQ-------

Query:  ------QE-------KTVSSGISGASYYTGNSST
              QE       +TVSSGISGASYYTG  +T
Subjt:  ------QE-------KTVSSGISGASYYTGNSST

XP_023548135.1 photosystem II stability/assembly factor HCF136, chloroplastic-like [Cucurbita pepo subsp. pepo]1.3e-4475.37Show/hide
Query:  KTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQ-------
        +TILE KDG RTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATG+KSAEMVTDEG +        
Subjt:  KTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQ-------

Query:  ------QE-------KTVSSGISGASYYTGNSST
              QE       +TVSSGISGASYYTG  +T
Subjt:  ------QE-------KTVSSGISGASYYTGNSST

XP_038900067.1 photosystem II stability/assembly factor HCF136, chloroplastic [Benincasa hispida]1.3e-4475.37Show/hide
Query:  KTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQ-------
        +TILE KDG RTWAPRSIPSAEEEDFNYRFN+ISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEG +        
Subjt:  KTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQ-------

Query:  ------QE-------KTVSSGISGASYYTGNSST
              QE       +TVSSGISGASYYTG  +T
Subjt:  ------QE-------KTVSSGISGASYYTGNSST

TrEMBL top hitse value%identityAlignment
A0A0A0K5Y1 Photosystem II stability/assembly factor6.3e-4575.37Show/hide
Query:  KTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQ-------
        +TILE KDG RTWAPRSIPSAEEEDFNYRFN+ISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEG +        
Subjt:  KTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQ-------

Query:  ------QE-------KTVSSGISGASYYTGNSST
              QE       +TVSSGISGASYYTG  +T
Subjt:  ------QE-------KTVSSGISGASYYTGNSST

A0A1S3CFV0 Photosystem II stability/assembly factor6.3e-4575.37Show/hide
Query:  KTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQ-------
        +TILE KDG RTWAPRSIPSAEEEDFNYRFN+ISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEG +        
Subjt:  KTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQ-------

Query:  ------QE-------KTVSSGISGASYYTGNSST
              QE       +TVSSGISGASYYTG  +T
Subjt:  ------QE-------KTVSSGISGASYYTGNSST

A0A5D3CGP8 Photosystem II stability/assembly factor6.3e-4575.37Show/hide
Query:  KTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQ-------
        +TILE KDG RTWAPRSIPSAEEEDFNYRFN+ISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEG +        
Subjt:  KTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQ-------

Query:  ------QE-------KTVSSGISGASYYTGNSST
              QE       +TVSSGISGASYYTG  +T
Subjt:  ------QE-------KTVSSGISGASYYTGNSST

A0A6J1GMA2 Photosystem II stability/assembly factor2.8e-4576.12Show/hide
Query:  KTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQ-------
        +TILE KDG RTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEG +        
Subjt:  KTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQ-------

Query:  ------QE-------KTVSSGISGASYYTGNSST
              QE       +TVSSGISGASYYTG  +T
Subjt:  ------QE-------KTVSSGISGASYYTGNSST

A0A6J1JT27 Photosystem II stability/assembly factor2.8e-4576.12Show/hide
Query:  KTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQ-------
        +TILE KDG RTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEG +        
Subjt:  KTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQ-------

Query:  ------QE-------KTVSSGISGASYYTGNSST
              QE       +TVSSGISGASYYTG  +T
Subjt:  ------QE-------KTVSSGISGASYYTGNSST

SwissProt top hitse value%identityAlignment
O82660 Photosystem II stability/assembly factor HCF136, chloroplastic1.7e-4267.67Show/hide
Query:  KTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQ-------
        +T+LE KDG  TW PRSIPSAEEEDFNYRFN+ISFKGKEGWI+GKPAILLYT++A E+W+RIPLS+QLPGDMV+IKAT +KSAEMVTDEG +        
Subjt:  KTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQ-------

Query:  ------QE-------KTVSSGISGASYYTGNSS
              QE       +TVSSGISGASYYTG  S
Subjt:  ------QE-------KTVSSGISGASYYTGNSS

P48325 Photosystem II stability/assembly factor HCF1362.6e-1951Show/hide
Query:  TILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQQEKTVSSG
        T+ E  D  +TW  RS+     ED  YR N+ISF GKEGW+ GKPAILL+T++   SW RIPLS QLPGD   I A G   AE+ TD G +   +T +SG
Subjt:  TILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQQEKTVSSG

Q5Z5A8 Photosystem II stability/assembly factor HCF136, chloroplastic2.2e-4267.16Show/hide
Query:  KTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQ-------
        +TILE K+G  TW PRSIPSAE+EDFNYRFN++SF GKEGWI+GKPAILL+TS+A +SWERIPLSAQLPG+MVYIKATGE+SAEMVTDEG +        
Subjt:  KTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQ-------

Query:  ------QE-------KTVSSGISGASYYTGNSST
              QE       +TVSSGISGASYYTG  +T
Subjt:  ------QE-------KTVSSGISGASYYTGNSST

Q8DI95 Ycf48-like protein6.8e-2046.32Show/hide
Query:  TILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQQEK
        T++E +DG +TW PR++     +  +YRFN++SF+G EGWIVG+P I+L+T++  +SW +IPL  +LPG    IKA G  SAEM+T+ G + + K
Subjt:  TILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQQEK

Q9AW48 Photosystem II stability/assembly factor HCF136, chloroplastic9.1e-2542.75Show/hide
Query:  TILEAKDGERTWAPRSIPSAE-EEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVL--------
        T LE  DG  TW PR+  + + +E+  YRF  ISF+G+EGW++GKPAI+LYT +  ++W R+P+S +LPG+   IKA G +SAE+ T  G +        
Subjt:  TILEAKDGERTWAPRSIPSAE-EEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVL--------

Query:  ------------QQEKTVSSGISGASYYTGN
                       +T+SSG+SGASY+TGN
Subjt:  ------------QQEKTVSSGISGASYYTGN

Arabidopsis top hitse value%identityAlignment
AT1G02080.1 transcription regulators2.0e-0660Show/hide
Query:  YVVPEILAVTIRFIQKDAGEKKASYNPRPFFRLFI
        +++ EI+A T+RFIQKDA +KK S N +P+FRLFI
Subjt:  YVVPEILAVTIRFIQKDAGEKKASYNPRPFFRLFI

AT1G02080.2 transcription regulators2.0e-0660Show/hide
Query:  YVVPEILAVTIRFIQKDAGEKKASYNPRPFFRLFI
        +++ EI+A T+RFIQKDA +KK S N +P+FRLFI
Subjt:  YVVPEILAVTIRFIQKDAGEKKASYNPRPFFRLFI

AT1G30270.1 CBL-interacting protein kinase 238.3e-0585Show/hide
Query:  EDGLLHTTCGTPNYVVPEIL
        EDGLLHTTCGTPNYV PE++
Subjt:  EDGLLHTTCGTPNYVVPEIL

AT1G48260.1 CBL-interacting protein kinase 174.8e-0585.71Show/hide
Query:  EDGLLHTTCGTPNYVVPEILA
        EDGLLHTTCG+PNYV PE+LA
Subjt:  EDGLLHTTCGTPNYVVPEILA

AT5G23120.1 photosystem II stability/assembly factor, chloroplast (HCF136)1.2e-4367.67Show/hide
Query:  KTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQ-------
        +T+LE KDG  TW PRSIPSAEEEDFNYRFN+ISFKGKEGWI+GKPAILLYT++A E+W+RIPLS+QLPGDMV+IKAT +KSAEMVTDEG +        
Subjt:  KTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQ-------

Query:  ------QE-------KTVSSGISGASYYTGNSS
              QE       +TVSSGISGASYYTG  S
Subjt:  ------QE-------KTVSSGISGASYYTGNSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGATCGAGCCCGAGAGCGAAACCTTCGACGGCAGCTTCGACGGCGACTAGACCTCACCGACGGCAGCTGGATCCTCACCGGCGGCGACTGGACGGCTACATTTCA
GAACTTCCTTCCCTCACAATCGACGACTGGACGACGATTTGAAGCCCATTTCTTCTACTTCTCTGTCGTTGAGAAAGAAACGCTAAAGAATTTGGAATTGTTTATGTTTT
TCTGGAAAACCATTTTAGAGGCAAAAGATGGCGAAAGAACGTGGGCTCCACGTTCAATACCCTCGGCTGAAGAAGAAGACTTTAACTACCGATTTAATGCTATTAGCTTC
AAAGGGAAGGAGGGATGGATTGTTGGCAAACCTGCGATTCTGTTATACACTTCGAATGCTAAAGAAAGCTGGGAAAGGATACCTCTTAGTGCTCAGCTTCCTGGAGATAT
GGTCTACATTAAAGCAACTGGAGAAAAAAGTGCTGAGATGGTTACTGATGAAGGTGTGCTTCAGCAGGAAAAAACAGTTTCAAGTGGTATAAGTGGTGCAAGCTATTATA
CTGGAAATTCAAGTACATCACTTTCATTGAGCTCTGTGAAGCTTGAAGTTGGCGATTTTGAAGATGGATTGCTCCACACAACATGTGGAACACCAAATTATGTTGTTCCA
GAGATTCTGGCAGTGACTATAAGATTCATTCAGAAAGATGCTGGGGAGAAGAAAGCATCATATAATCCAAGACCATTTTTTAGATTGTTTATTACTATTAAGGCCGACGG
CGCACGGTGGCGACAGAGAAGCACCGAAGGGGAAGAAACAAAAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGATCGAGCCCGAGAGCGAAACCTTCGACGGCAGCTTCGACGGCGACTAGACCTCACCGACGGCAGCTGGATCCTCACCGGCGGCGACTGGACGGCTACATTTCA
GAACTTCCTTCCCTCACAATCGACGACTGGACGACGATTTGAAGCCCATTTCTTCTACTTCTCTGTCGTTGAGAAAGAAACGCTAAAGAATTTGGAATTGTTTATGTTTT
TCTGGAAAACCATTTTAGAGGCAAAAGATGGCGAAAGAACGTGGGCTCCACGTTCAATACCCTCGGCTGAAGAAGAAGACTTTAACTACCGATTTAATGCTATTAGCTTC
AAAGGGAAGGAGGGATGGATTGTTGGCAAACCTGCGATTCTGTTATACACTTCGAATGCTAAAGAAAGCTGGGAAAGGATACCTCTTAGTGCTCAGCTTCCTGGAGATAT
GGTCTACATTAAAGCAACTGGAGAAAAAAGTGCTGAGATGGTTACTGATGAAGGTGTGCTTCAGCAGGAAAAAACAGTTTCAAGTGGTATAAGTGGTGCAAGCTATTATA
CTGGAAATTCAAGTACATCACTTTCATTGAGCTCTGTGAAGCTTGAAGTTGGCGATTTTGAAGATGGATTGCTCCACACAACATGTGGAACACCAAATTATGTTGTTCCA
GAGATTCTGGCAGTGACTATAAGATTCATTCAGAAAGATGCTGGGGAGAAGAAAGCATCATATAATCCAAGACCATTTTTTAGATTGTTTATTACTATTAAGGCCGACGG
CGCACGGTGGCGACAGAGAAGCACCGAAGGGGAAGAAACAAAAGAATGA
Protein sequenceShow/hide protein sequence
MVDRARERNLRRQLRRRLDLTDGSWILTGGDWTATFQNFLPSQSTTGRRFEAHFFYFSVVEKETLKNLELFMFFWKTILEAKDGERTWAPRSIPSAEEEDFNYRFNAISF
KGKEGWIVGKPAILLYTSNAKESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGVLQQEKTVSSGISGASYYTGNSSTSLSLSSVKLEVGDFEDGLLHTTCGTPNYVVP
EILAVTIRFIQKDAGEKKASYNPRPFFRLFITIKADGARWRQRSTEGEETKE