; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027908 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027908
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationscaffold2:38241012..38241750
RNA-Seq ExpressionSpg027908
SyntenySpg027908
Gene Ontology termsNA
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065480.1 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa]6.1e-5044.86Show/hide
Query:  TDGSSSTASALATNEIEGQLNPYLLHHSAAPTTTLVTQQLTGSSNYISWSKVMLLALSGKNKLGFVNESIQKPS-GTLSSACQCNNDIVTSWIVNSISKE
        T+GS       A ++ + QLNPY +HHS  PT  +VTQ LTG+ NY SWS+ ML+A+SG+NK GF+   IQKPS G L  A  CNNDI+ SWI+NS+SKE
Subjt:  TDGSSSTASALATNEIEGQLNPYLLHHSAAPTTTLVTQQLTGSSNYISWSKVMLLALSGKNKLGFVNESIQKPS-GTLSSACQCNNDIVTSWIVNSISKE

Query:  IAASLV----------------------------------NHCSLSVEAYYVKIMSLWLELIEYRPTDKCSCGGSKELIEFFDSQFVMIFMMGLNEAYSS
        IAAS++                                     +L++E YY K+ ++W  L EYR T+ C+CGG K  I+  +S+++M F+MGLN++Y++
Subjt:  IAASLV----------------------------------NHCSLSVEAYYVKIMSLWLELIEYRPTDKCSCGGSKELIEFFDSQFVMIFMMGLNEAYSS

Query:  LRTQILLMNPIPTINKVFALAIQEERQRGAG-KTPSVESMALS
        +R QILLM P+P+IN VF+L IQEE+QR AG  TP ++ +AL+
Subjt:  LRTQILLMNPIPTINKVFALAIQEERQRGAG-KTPSVESMALS

KAF5444131.1 hypothetical protein F2P56_036633 [Juglans regia]2.3e-3640.96Show/hide
Query:  MTDGSSSTASALATNEIEGQLNPYLLHHSAAPTTTLVTQQLTGSSNYISWSKVMLLALSGKNKLGFVNESIQKPSGT---LSSACQCNNDIVTSWIVNSI
        MT  S+S+ S    N  +   +PY LH+  +P + LVTQ L G  NY +W + M++AL+ KNK+GFVN SI KPS T        +CNN ++ SWI+NS+
Subjt:  MTDGSSSTASALATNEIEGQLNPYLLHHSAAPTTTLVTQQLTGSSNYISWSKVMLLALSGKNKLGFVNESIQKPSGT---LSSACQCNNDIVTSWIVNSI

Query:  SKEIAASLVNHCS----------------------------------LSVEAYYVKIMSLWLELIEYRPTDKCSCGGSKELIEFFDSQFVMIFMMGLNEA
        SKEIAAS++   S                                  LSV AY+ ++  LW EL+ YRP   CSCGG + L++     +VM F+MGLN++
Subjt:  SKEIAASLVNHCS----------------------------------LSVEAYYVKIMSLWLELIEYRPTDKCSCGGSKELIEFFDSQFVMIFMMGLNEA

Query:  YSSLRTQILLMNPIPTINKVFALAIQEERQRGAGK--TPSVESMALSAS
        +S +R QILL++P+P INKVF+  +QEERQR  G    P + S ALS++
Subjt:  YSSLRTQILLMNPIPTINKVFALAIQEERQRGAGK--TPSVESMALSAS

KAF5474219.1 hypothetical protein F2P56_006134 [Juglans regia]1.7e-3642.11Show/hide
Query:  NPYLLHHSAAPTTTLVTQQLTGSSNYISWSKVMLLALSGKNKLGFVNESIQKPSGT---LSSACQCNNDIVTSWIVNSISKEIAASLV------------
        +PY LHH  +P + LVTQ L G  NY +W + ML+AL+ KNK+GFVN SI KP+ T     S  +CNN ++ SW++NS+SKEIAAS++            
Subjt:  NPYLLHHSAAPTTTLVTQQLTGSSNYISWSKVMLLALSGKNKLGFVNESIQKPSGT---LSSACQCNNDIVTSWIVNSISKEIAASLV------------

Query:  ----------------------NHCSLSVEAYYVKIMSLWLELIEYRPTDKCSCGGSKELIEFFDSQFVMIFMMGLNEAYSSLRTQILLMNPIPTINKVF
                                  LSV AY+ ++  LW EL+ YRP   CSCGG + L+      +VM F+MGLN+++S +R QILL++P+P +NKVF
Subjt:  ----------------------NHCSLSVEAYYVKIMSLWLELIEYRPTDKCSCGGSKELIEFFDSQFVMIFMMGLNEAYSSLRTQILLMNPIPTINKVF

Query:  ALAIQEERQRGAGK--TPSVESMALSAS
        +L +QEERQR  G    P + S ALS++
Subjt:  ALAIQEERQRGAGK--TPSVESMALSAS

KAF5478995.1 hypothetical protein F2P56_005510, partial [Juglans regia]1.3e-3642.11Show/hide
Query:  NPYLLHHSAAPTTTLVTQQLTGSSNYISWSKVMLLALSGKNKLGFVNESIQKPSGT---LSSACQCNNDIVTSWIVNSISKEIAASLV------------
        +PY LHH  +P + LVTQ L G  NY +W + ML+AL+ KNK+GFVN SI KP+ T     S  +CNN ++ SW++NS+SKEIAAS++            
Subjt:  NPYLLHHSAAPTTTLVTQQLTGSSNYISWSKVMLLALSGKNKLGFVNESIQKPSGT---LSSACQCNNDIVTSWIVNSISKEIAASLV------------

Query:  ----------------------NHCSLSVEAYYVKIMSLWLELIEYRPTDKCSCGGSKELIEFFDSQFVMIFMMGLNEAYSSLRTQILLMNPIPTINKVF
                                  LSV AY+ ++  LW EL+ YRP   CSCGG + L+      +VM F+MGLN+++S +R QILL++P+P +NKVF
Subjt:  ----------------------NHCSLSVEAYYVKIMSLWLELIEYRPTDKCSCGGSKELIEFFDSQFVMIFMMGLNEAYSSLRTQILLMNPIPTINKVF

Query:  ALAIQEERQRGAGK--TPSVESMALSAS
        +L +QEERQR  G    P + S ALS++
Subjt:  ALAIQEERQRGAGK--TPSVESMALSAS

XP_022145891.1 uncharacterized protein LOC111015239 [Momordica charantia]5.5e-5951.87Show/hide
Query:  SSSTASALATNEIEGQLNPYLLHHSAAPTTTLVTQQLTGSSNYISWSKVMLLALSGKNKLGFVNESIQKPSGTLSSACQCNNDIVTSWIVNSISKEIAAS
        S  T+S   T  IE QLNPYL+HHS APTT LVTQQL G+SNY SW + ML+ALSGKNK+GF++ +I+KP+G L +A +CNNDI+TSWI+NS+SKEIAAS
Subjt:  SSSTASALATNEIEGQLNPYLLHHSAAPTTTLVTQQLTGSSNYISWSKVMLLALSGKNKLGFVNESIQKPSGTLSSACQCNNDIVTSWIVNSISKEIAAS

Query:  LVNHCS----------------------------------LSVEAYYVKIMSLWLELIEYRPTDKCSCGGSKELIEFFDSQFVMIFMMGLNEAYSSLRTQ
        ++   S                                  LS+EAYY K+ ++W EL +YRPT  C+C G K L EFF S++VM F+MGLNE+Y+ +R Q
Subjt:  LVNHCS----------------------------------LSVEAYYVKIMSLWLELIEYRPTDKCSCGGSKELIEFFDSQFVMIFMMGLNEAYSSLRTQ

Query:  ILLMNPIPTINKVFALAIQEERQRGAGK-TPSVESMALSAS
        ILLM+PIP +NKVF+L IQEERQR  G   P + SMA++ +
Subjt:  ILLMNPIPTINKVFALAIQEERQRGAGK-TPSVESMALSAS

TrEMBL top hitse value%identityAlignment
A0A5A7VE66 Cysteine-rich RLK (Receptor-like protein kinase) 83.0e-5044.86Show/hide
Query:  TDGSSSTASALATNEIEGQLNPYLLHHSAAPTTTLVTQQLTGSSNYISWSKVMLLALSGKNKLGFVNESIQKPS-GTLSSACQCNNDIVTSWIVNSISKE
        T+GS       A ++ + QLNPY +HHS  PT  +VTQ LTG+ NY SWS+ ML+A+SG+NK GF+   IQKPS G L  A  CNNDI+ SWI+NS+SKE
Subjt:  TDGSSSTASALATNEIEGQLNPYLLHHSAAPTTTLVTQQLTGSSNYISWSKVMLLALSGKNKLGFVNESIQKPS-GTLSSACQCNNDIVTSWIVNSISKE

Query:  IAASLV----------------------------------NHCSLSVEAYYVKIMSLWLELIEYRPTDKCSCGGSKELIEFFDSQFVMIFMMGLNEAYSS
        IAAS++                                     +L++E YY K+ ++W  L EYR T+ C+CGG K  I+  +S+++M F+MGLN++Y++
Subjt:  IAASLV----------------------------------NHCSLSVEAYYVKIMSLWLELIEYRPTDKCSCGGSKELIEFFDSQFVMIFMMGLNEAYSS

Query:  LRTQILLMNPIPTINKVFALAIQEERQRGAG-KTPSVESMALS
        +R QILLM P+P+IN VF+L IQEE+QR AG  TP ++ +AL+
Subjt:  LRTQILLMNPIPTINKVFALAIQEERQRGAG-KTPSVESMALS

A0A5J5B7Z9 Uncharacterized protein7.1e-3639.5Show/hide
Query:  SALATNEIEGQLNPYLLHHSAAPTTTLVTQQLTGSSNYISWSKVMLLALSGKNKLGFVNESIQKPS----GTLSSACQCNNDIVTSWIVNSISKEIAASL
        ++L++N I+   +PY LHH  +P   LV+Q LTG  NY +WS+ M +ALS KNKLGF++ SI +PS        +  +CNN +V SWI+NS+SK++A S+
Subjt:  SALATNEIEGQLNPYLLHHSAAPTTTLVTQQLTGSSNYISWSKVMLLALSGKNKLGFVNESIQKPS----GTLSSACQCNNDIVTSWIVNSISKEIAASL

Query:  V----------------------------------NHCSLSVEAYYVKIMSLWLELIEYRPTDKCSCGGSKELIEFFDSQFVMIFMMGLNEAYSSLRTQI
        +                                  +    SV  Y+ ++  LW EL  +RP   C+CG SK L+++   + VM F+MGLNE+YS +R Q+
Subjt:  V----------------------------------NHCSLSVEAYYVKIMSLWLELIEYRPTDKCSCGGSKELIEFFDSQFVMIFMMGLNEAYSSLRTQI

Query:  LLMNPIPTINKVFALAIQEERQRGAGKT--PSVESMAL
        LLM+P+P INKVF+L +QEERQR       P++E  AL
Subjt:  LLMNPIPTINKVFALAIQEERQRGAGKT--PSVESMAL

A0A5J5BKC2 Uncharacterized protein5.4e-3641.45Show/hide
Query:  MTDGSSSTASALATNEIEGQLNPYLLHHSAAPTTTLVTQQLTGSSNYISWSKVMLLALSGKNKLGFVNESIQKPSGT---LSSACQCNNDIVTSWIVNSI
        M+D +S   +    + IE   NPY LHHS +    LV+QQLTG  NY +WS+ ML+ALS KNKLGFV+ SI +P GT   L ++   NN+IV SWI+NS+
Subjt:  MTDGSSSTASALATNEIEGQLNPYLLHHSAAPTTTLVTQQLTGSSNYISWSKVMLLALSGKNKLGFVNESIQKPSGT---LSSACQCNNDIVTSWIVNSI

Query:  SKEIAASLVNHCSL----------------------------------SVEAYYVKIMSLWLELIEYR---PTDKCSCGGSKELIEFFDSQFVMIFMMGL
        SKEI+AS++   S                                   SV  Y+ K+ ++W EL  YR      KCSCGG K L +    +++M F+MGL
Subjt:  SKEIAASLVNHCSL----------------------------------SVEAYYVKIMSLWLELIEYR---PTDKCSCGGSKELIEFFDSQFVMIFMMGL

Query:  NEAYSSLRTQILLMNPIPTINKVFALAIQEERQR
        ++++S +R Q+LLM+P+P IN+VF+L +QEE+QR
Subjt:  NEAYSSLRTQILLMNPIPTINKVFALAIQEERQR

A0A6J1CXR2 uncharacterized protein LOC1110152392.7e-5951.87Show/hide
Query:  SSSTASALATNEIEGQLNPYLLHHSAAPTTTLVTQQLTGSSNYISWSKVMLLALSGKNKLGFVNESIQKPSGTLSSACQCNNDIVTSWIVNSISKEIAAS
        S  T+S   T  IE QLNPYL+HHS APTT LVTQQL G+SNY SW + ML+ALSGKNK+GF++ +I+KP+G L +A +CNNDI+TSWI+NS+SKEIAAS
Subjt:  SSSTASALATNEIEGQLNPYLLHHSAAPTTTLVTQQLTGSSNYISWSKVMLLALSGKNKLGFVNESIQKPSGTLSSACQCNNDIVTSWIVNSISKEIAAS

Query:  LVNHCS----------------------------------LSVEAYYVKIMSLWLELIEYRPTDKCSCGGSKELIEFFDSQFVMIFMMGLNEAYSSLRTQ
        ++   S                                  LS+EAYY K+ ++W EL +YRPT  C+C G K L EFF S++VM F+MGLNE+Y+ +R Q
Subjt:  LVNHCS----------------------------------LSVEAYYVKIMSLWLELIEYRPTDKCSCGGSKELIEFFDSQFVMIFMMGLNEAYSSLRTQ

Query:  ILLMNPIPTINKVFALAIQEERQRGAGK-TPSVESMALSAS
        ILLM+PIP +NKVF+L IQEERQR  G   P + SMA++ +
Subjt:  ILLMNPIPTINKVFALAIQEERQRGAGK-TPSVESMALSAS

A0A6J1DIP8 uncharacterized protein LOC1110203991.9e-3641.18Show/hide
Query:  SSSTASALATNEIEGQLNPYLLHHSAAPTTTLVTQQLTGSSNYISWSKVMLLALSGKNKLGFVNESIQKPSGTLSSACQCNNDIVTSWIVNSISKEIAAS
        ++ST++ +A   IE   NPY LHHS   +  LV+  LT + NY SWS+ ML+AL+ KNK+GFV+ SI +P+G L  +    N++V SWI+NS+SKEI+AS
Subjt:  SSSTASALATNEIEGQLNPYLLHHSAAPTTTLVTQQLTGSSNYISWSKVMLLALSGKNKLGFVNESIQKPSGTLSSACQCNNDIVTSWIVNSISKEIAAS

Query:  LVNHCS----------------------------------LSVEAYYVKIMSLWLELIEYRPT---DKCSCGGSKELIEFFDSQFVMIFMMGLNEAYSSL
        ++   S                                  LSV AY+  + +LW EL  Y P+    +CSCGG KE+I F   + VM F+MGLNE++S L
Subjt:  LVNHCS----------------------------------LSVEAYYVKIMSLWLELIEYRPT---DKCSCGGSKELIEFFDSQFVMIFMMGLNEAYSSL

Query:  RTQILLMNPIPTINKVFALAIQEERQRGAGKTPSVESM
        R Q+LLM P PTIN+VF+L  QE +QR    + S +++
Subjt:  RTQILLMNPIPTINKVFALAIQEERQRGAGKTPSVESM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).8.6e-1023.5Show/hide
Query:  NPYLL----HHSAAPTTTLVTQQLTGSSNYISWSKVMLLALSGKNKLGFVNESIQKPS--GTLSSACQCNNDIVTSWIVNSISKEIAASL----------
        +PY L    HH   P+   + +      NY++W       L    K GF++ ++ KP     L    +  N +V  W++NS++ ++  S+          
Subjt:  NPYLL----HHSAAPTTTLVTQQLTGSSNYISWSKVMLLALSGKNKLGFVNESIQKPS--GTLSSACQCNNDIVTSWIVNSISKEIAASL----------

Query:  ------------------------VNHCSLSVEAYYVKIMSLWLELIEYRPTDKCSCGG-----SKELIEFFDSQFVMIFMMG--LNEAYSSLRTQILLM
                                +     SVE Y+ K+  +W+EL EY P  +C CGG     +K   E  + +    F+MG  LN+ + ++ T+I+  
Subjt:  ------------------------VNHCSLSVEAYYVKIMSLWLELIEYRPTDKCSCGG-----SKELIEFFDSQFVMIFMMG--LNEAYSSLRTQILLM

Query:  NPIPTINKVFALAIQEE
         P P++++ FA+    E
Subjt:  NPIPTINKVFALAIQEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCGACGGATCTTCCTCGACTGCATCAGCTCTAGCTACCAATGAAATTGAAGGTCAATTGAATCCATACCTATTGCATCATTCCGCTGCACCTACAACTACACTTGT
TACTCAACAATTGACTGGTTCCAGCAACTACATCTCGTGGAGTAAAGTTATGCTCCTCGCTCTATCCGGCAAAAACAAGCTAGGTTTTGTGAACGAATCCATACAAAAAC
CAAGCGGTACGCTCTCTTCTGCCTGCCAATGCAACAATGACATAGTTACTTCCTGGATTGTGAACTCAATTTCGAAAGAAATAGCCGCTAGCCTTGTAAATCACTGCTCT
CTCTCTGTCGAAGCTTATTATGTGAAGATCATGTCACTTTGGCTCGAATTGATCGAATATAGACCCACTGACAAGTGCTCTTGTGGAGGATCGAAAGAGTTGATTGAGTT
TTTTGATTCTCAGTTTGTAATGATTTTCATGATGGGTCTCAATGAAGCATACTCATCCTTACGCACCCAAATACTTCTTATGAATCCCATCCCTACCATCAACAAAGTCT
TTGCACTTGCGATTCAAGAAGAGCGACAACGAGGTGCTGGAAAAACCCCATCAGTCGAATCGATGGCTCTCTCTGCTAGCTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGACCGACGGATCTTCCTCGACTGCATCAGCTCTAGCTACCAATGAAATTGAAGGTCAATTGAATCCATACCTATTGCATCATTCCGCTGCACCTACAACTACACTTGT
TACTCAACAATTGACTGGTTCCAGCAACTACATCTCGTGGAGTAAAGTTATGCTCCTCGCTCTATCCGGCAAAAACAAGCTAGGTTTTGTGAACGAATCCATACAAAAAC
CAAGCGGTACGCTCTCTTCTGCCTGCCAATGCAACAATGACATAGTTACTTCCTGGATTGTGAACTCAATTTCGAAAGAAATAGCCGCTAGCCTTGTAAATCACTGCTCT
CTCTCTGTCGAAGCTTATTATGTGAAGATCATGTCACTTTGGCTCGAATTGATCGAATATAGACCCACTGACAAGTGCTCTTGTGGAGGATCGAAAGAGTTGATTGAGTT
TTTTGATTCTCAGTTTGTAATGATTTTCATGATGGGTCTCAATGAAGCATACTCATCCTTACGCACCCAAATACTTCTTATGAATCCCATCCCTACCATCAACAAAGTCT
TTGCACTTGCGATTCAAGAAGAGCGACAACGAGGTGCTGGAAAAACCCCATCAGTCGAATCGATGGCTCTCTCTGCTAGCTGCTGA
Protein sequenceShow/hide protein sequence
MTDGSSSTASALATNEIEGQLNPYLLHHSAAPTTTLVTQQLTGSSNYISWSKVMLLALSGKNKLGFVNESIQKPSGTLSSACQCNNDIVTSWIVNSISKEIAASLVNHCS
LSVEAYYVKIMSLWLELIEYRPTDKCSCGGSKELIEFFDSQFVMIFMMGLNEAYSSLRTQILLMNPIPTINKVFALAIQEERQRGAGKTPSVESMALSASC