; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027915 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027915
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold2:38880849..38881881
RNA-Seq ExpressionSpg027915
SyntenySpg027915
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4279811.1 unnamed protein product [Prunus armeniaca]4.1e-1928.96Show/hide
Query:  WNEDLIRQNFIPQDANDILNMPTGGKDSKDEIFWHPVKNGIFLVKSAYHLATDTISNLEASQSDERKSSS------LWKSIWAMDSLPRTKVCVWKILND
        W+ DL+ + F P +A  I  +P       D+  WH   +G + V+S Y +A     N E  +  E +SS       +WKSIW +   P+ +  +WK   +
Subjt:  WNEDLIRQNFIPQDANDILNMPTGGKDSKDEIFWHPVKNGIFLVKSAYHLATDTISNLEASQSDERKSSS------LWKSIWAMDSLPRTKVCVWKILND

Query:  IISTKTNIQSKGIDINPM-----MERPPMD-IWSWMTDNLSKK------------------------------ELETGCIIIKP-----PAPSKARNHTS
        +++ K N+   GID+         E    D I  W  +NL KK                              E  T  +  KP     P P + +  T 
Subjt:  IISTKTNIQSKGIDINPM-----MERPPMD-IWSWMTDNLSKK------------------------------ELETGCIIIKP-----PAPSKARNHTS

Query:  HACWERPKLGHWKLNSDAAWNKDKGCGGLGWVVRDSSGSTICFGMKTIYKEWLVNLLEAKAIAEGLNEIIHTCVRERI-PLEVETDALGVIKVINGD
           W +   G  K+N DAAW      GG+GWVVRDS G  +  G K   +      +EAKAI E L      CV+  +  LEVE+D+L +I+++ G+
Subjt:  HACWERPKLGHWKLNSDAAWNKDKGCGGLGWVVRDSSGSTICFGMKTIYKEWLVNLLEAKAIAEGLNEIIHTCVRERI-PLEVETDALGVIKVINGD

CAB4313148.1 unnamed protein product [Prunus armeniaca]2.8e-2025.67Show/hide
Query:  WNEDLIRQNFIPQDANDILNMPTGGKDSKDEIFWHPVKNGIFLVKSAYHLATDTISNLE------ASQSDERKSSSLWKSIWAMDSLPRTKVCVWKILND
        W ED+I + F+P +A  IL++P       D++ WH   +G + V+S+Y LA     N E      +  S     SS+WKS W  D+ P+ K  +W+  ++
Subjt:  WNEDLIRQNFIPQDANDILNMPTGGKDSKDEIFWHPVKNGIFLVKSAYHLATDTISNLE------ASQSDERKSSSLWKSIWAMDSLPRTKVCVWKILND

Query:  IISTKTNIQSK--GIDINPMMERPPMDIWSWMTDNLSKKELETGCI-----------------------------------------IIK---PPAPSKA
        I++ + N++ +   +D+N +     +  W ++   ++  E     I                                         I K    P P + 
Subjt:  IISTKTNIQSK--GIDINPMMERPPMDIWSWMTDNLSKKELETGCI-----------------------------------------IIK---PPAPSKA

Query:  RNHTSHACWERPKLGHWKLNSDAAWNKDKGCGGLGWVVRDSSGSTICFGMKTIYKEWLVNLLEAKAIAEGLNEIIHTCVRERIPLEVETDALGVIKVING
         +      W +P  G  K+N DAAW+  + CGG+GWV+RDS G  +C G +         ++E  AI   L+E  H  +   I   VE+D+   I ++NG
Subjt:  RNHTSHACWERPKLGHWKLNSDAAWNKDKGCGGLGWVVRDSSGSTICFGMKTIYKEWLVNLLEAKAIAEGLNEIIHTCVRERIPLEVETDALGVIKVING

EEC68887.1 hypothetical protein OsI_37529 [Oryza sativa Indica Group]1.7e-2029.29Show/hide
Query:  DNNDWNEDLIRQNFIPQDANDILNMPTGGKDSKDEIFWHPVKNGIFLVKSAYHLATDTISNLEASQSDERKSSSLWKSIWAMDSLPRTKVCVWKILNDII
        ++  W+   I Q F   DA  ILN+    +  +D I WHP KNG+F V+SAY LA   ++  E+S S     +  W+ IW      + K+  W++ ++ +
Subjt:  DNNDWNEDLIRQNFIPQDANDILNMPTGGKDSKDEIFWHPVKNGIFLVKSAYHLATDTISNLEASQSDERKSSSLWKSIWAMDSLPRTKVCVWKILNDII

Query:  STKTN---------------IQSKGIDINPMMERPPMDIWSWM-----------TDNLSKKELETGCIIIKPPAPSKARNHTSHACWERPKLGHWKLNSD
        +T                  I  K     P  E     I S++            D +  K +     +   P      NH    CWERPK G  KLN D
Subjt:  STKTN---------------IQSKGIDINPMMERPPMDIWSWM-----------TDNLSKKELETGCIIIKPPAPSKARNHTSHACWERPKLGHWKLNSD

Query:  AAWNKDKGCGGLGWVVRDSSGSTICFGMKTIYKEWLVNLLEA--KAIAEGLNEIIHTCVRERIPLEVETDALGVIKVING
         +++   G GGLG ++R+S+G  I    K +  E   N LE+  +A  EGL   IH  +   +P++VETD   V++++ G
Subjt:  AAWNKDKGCGGLGWVVRDSSGSTICFGMKTIYKEWLVNLLEA--KAIAEGLNEIIHTCVRERIPLEVETDALGVIKVING

PNT78255.1 hypothetical protein BRADI_1g76105v3 [Brachypodium distachyon]1.0e-1727.48Show/hide
Query:  MDDNNDWNEDLIRQNFIPQDANDILNMPTGGKDSKDEIFWHPVKNGIFLVKSAYHLATDT---ISNLEASQSDERKSSSLWKSIWAMDSLPRTKVCVWKI
        +D+N  W ++L+R+ F+P D++ IL + T  + + D + WHP K G F V+SAY L  D+    ++  A+ S    S   W  IW   + P+ K+  WK 
Subjt:  MDDNNDWNEDLIRQNFIPQDANDILNMPTGGKDSKDEIFWHPVKNGIFLVKSAYHLATDT---ISNLEASQSDERKSSSLWKSIWAMDSLPRTKVCVWKI

Query:  LNDIISTKTNIQSKGIDINPMMERPPMDIWSWMTDNLSKKELETGCIIIKPPAPSKARNHTSHACWERPKLGHWKLNSDAAWNKDKGCGGLGWVVRDSSG
         N+ ++T+ N + +G+                        E +  C   +P AP   +       W  P  G  KLN D +  ++    G+G ++R  +G
Subjt:  LNDIISTKTNIQSKGIDINPMMERPPMDIWSWMTDNLSKKELETGCIIIKPPAPSKARNHTSHACWERPKLGHWKLNSDAAWNKDKGCGGLGWVVRDSSG

Query:  STICFGMKTIYKEWLVNLLEAK--AIAEGLNEIIHTCVRERIPLEVETDALGVIKVINGDAS
        + I    +T+  +   +  EA+  A  EGL   +  C   ++P+ VETD   V++   GD S
Subjt:  STICFGMKTIYKEWLVNLLEAK--AIAEGLNEIIHTCVRERIPLEVETDALGVIKVINGDAS

XP_035551510.1 uncharacterized protein LOC118349853 [Juglans regia]1.3e-1726.19Show/hide
Query:  NDWNEDLIRQNFIPQDANDILNMPTGGKDSKDEIFWHPVKNGIFLVKSAYHLATDTISNLEASQSDERKSSSLWKSIWAMDSLPRTKVCVWKILNDIIST
        + WNE+L+R+ F+ ++A  I ++P     S+D++ W P K G+F VKSAY+L  +  S L+   S E+K+ S+WK+IW++      K  +WK+ ND+++T
Subjt:  NDWNEDLIRQNFIPQDANDILNMPTGGKDSKDEIFWHPVKNGIFLVKSAYHLATDTISNLEASQSDERKSSSLWKSIWAMDSLPRTKVCVWKILNDIIST

Query:  KTNIQSKGIDIN---PMMER-------------PPMDIWSWMTDNLSKKELETGCI-----------------------------------IIKP-----
        + N+  + +  +   P+ +R                D+W+     + K   E  C                                    II P     
Subjt:  KTNIQSKGIDIN---PMMER-------------PPMDIWSWMTDNLSKKELETGCI-----------------------------------IIKP-----

Query:  PAPSKARNHTSHACWERPKLGHWKLNSDAAWNKDKGCGGLGWVVRDSSGSTI
           +   N   H  W++P  G +K N DAA N      GLG V+R+ +G  +
Subjt:  PAPSKARNHTSHACWERPKLGHWKLNSDAAWNKDKGCGGLGWVVRDSSGSTI

TrEMBL top hitse value%identityAlignment
A0A2K2DVE7 Uncharacterized protein4.9e-1827.48Show/hide
Query:  MDDNNDWNEDLIRQNFIPQDANDILNMPTGGKDSKDEIFWHPVKNGIFLVKSAYHLATDT---ISNLEASQSDERKSSSLWKSIWAMDSLPRTKVCVWKI
        +D+N  W ++L+R+ F+P D++ IL + T  + + D + WHP K G F V+SAY L  D+    ++  A+ S    S   W  IW   + P+ K+  WK 
Subjt:  MDDNNDWNEDLIRQNFIPQDANDILNMPTGGKDSKDEIFWHPVKNGIFLVKSAYHLATDT---ISNLEASQSDERKSSSLWKSIWAMDSLPRTKVCVWKI

Query:  LNDIISTKTNIQSKGIDINPMMERPPMDIWSWMTDNLSKKELETGCIIIKPPAPSKARNHTSHACWERPKLGHWKLNSDAAWNKDKGCGGLGWVVRDSSG
         N+ ++T+ N + +G+                        E +  C   +P AP   +       W  P  G  KLN D +  ++    G+G ++R  +G
Subjt:  LNDIISTKTNIQSKGIDINPMMERPPMDIWSWMTDNLSKKELETGCIIIKPPAPSKARNHTSHACWERPKLGHWKLNSDAAWNKDKGCGGLGWVVRDSSG

Query:  STICFGMKTIYKEWLVNLLEAK--AIAEGLNEIIHTCVRERIPLEVETDALGVIKVINGDAS
        + I    +T+  +   +  EA+  A  EGL   +  C   ++P+ VETD   V++   GD S
Subjt:  STICFGMKTIYKEWLVNLLEAK--AIAEGLNEIIHTCVRERIPLEVETDALGVIKVINGDAS

A0A6J5UV01 Reverse transcriptase domain-containing protein2.0e-1928.96Show/hide
Query:  WNEDLIRQNFIPQDANDILNMPTGGKDSKDEIFWHPVKNGIFLVKSAYHLATDTISNLEASQSDERKSSS------LWKSIWAMDSLPRTKVCVWKILND
        W+ DL+ + F P +A  I  +P       D+  WH   +G + V+S Y +A     N E  +  E +SS       +WKSIW +   P+ +  +WK   +
Subjt:  WNEDLIRQNFIPQDANDILNMPTGGKDSKDEIFWHPVKNGIFLVKSAYHLATDTISNLEASQSDERKSSS------LWKSIWAMDSLPRTKVCVWKILND

Query:  IISTKTNIQSKGIDINPM-----MERPPMD-IWSWMTDNLSKK------------------------------ELETGCIIIKP-----PAPSKARNHTS
        +++ K N+   GID+         E    D I  W  +NL KK                              E  T  +  KP     P P + +  T 
Subjt:  IISTKTNIQSKGIDINPM-----MERPPMD-IWSWMTDNLSKK------------------------------ELETGCIIIKP-----PAPSKARNHTS

Query:  HACWERPKLGHWKLNSDAAWNKDKGCGGLGWVVRDSSGSTICFGMKTIYKEWLVNLLEAKAIAEGLNEIIHTCVRERI-PLEVETDALGVIKVINGD
           W +   G  K+N DAAW      GG+GWVVRDS G  +  G K   +      +EAKAI E L      CV+  +  LEVE+D+L +I+++ G+
Subjt:  HACWERPKLGHWKLNSDAAWNKDKGCGGLGWVVRDSSGSTICFGMKTIYKEWLVNLLEAKAIAEGLNEIIHTCVRERI-PLEVETDALGVIKVINGD

A0A6J5XPQ2 RNase H domain-containing protein1.4e-2025.67Show/hide
Query:  WNEDLIRQNFIPQDANDILNMPTGGKDSKDEIFWHPVKNGIFLVKSAYHLATDTISNLE------ASQSDERKSSSLWKSIWAMDSLPRTKVCVWKILND
        W ED+I + F+P +A  IL++P       D++ WH   +G + V+S+Y LA     N E      +  S     SS+WKS W  D+ P+ K  +W+  ++
Subjt:  WNEDLIRQNFIPQDANDILNMPTGGKDSKDEIFWHPVKNGIFLVKSAYHLATDTISNLE------ASQSDERKSSSLWKSIWAMDSLPRTKVCVWKILND

Query:  IISTKTNIQSK--GIDINPMMERPPMDIWSWMTDNLSKKELETGCI-----------------------------------------IIK---PPAPSKA
        I++ + N++ +   +D+N +     +  W ++   ++  E     I                                         I K    P P + 
Subjt:  IISTKTNIQSK--GIDINPMMERPPMDIWSWMTDNLSKKELETGCI-----------------------------------------IIK---PPAPSKA

Query:  RNHTSHACWERPKLGHWKLNSDAAWNKDKGCGGLGWVVRDSSGSTICFGMKTIYKEWLVNLLEAKAIAEGLNEIIHTCVRERIPLEVETDALGVIKVING
         +      W +P  G  K+N DAAW+  + CGG+GWV+RDS G  +C G +         ++E  AI   L+E  H  +   I   VE+D+   I ++NG
Subjt:  RNHTSHACWERPKLGHWKLNSDAAWNKDKGCGGLGWVVRDSSGSTICFGMKTIYKEWLVNLLEAKAIAEGLNEIIHTCVRERIPLEVETDALGVIKVING

A0A803NGM9 Uncharacterized protein1.0e-2030.6Show/hide
Query:  NNDWNEDLIRQNFIPQDANDILNMPTGGKDSKDEIFWHPVKNGIFLVKSAYHLATDTISNLEASQSDERKSSSLWKSIWAMDSLPRTKVCVWKILNDIIS
        +  W+E+ +R  F  +DA  IL+MP+ G D +D+I WH  KNG + VKS Y +AT   S  E  QSD++     WK++W +   P+ K  VWK++ + I 
Subjt:  NNDWNEDLIRQNFIPQDANDILNMPTGGKDSKDEIFWHPVKNGIFLVKSAYHLATDTISNLEASQSDERKSSSLWKSIWAMDSLPRTKVCVWKILNDIIS

Query:  TKTNIQSKGIDINPMMER-----------------PPMDIWS----WMTDNLSKKELETGCIIIKPPAPSKARNHTSHAC--WERPKLGHWKLNSDAAWN
        T  N+  +G+D++ +  R                    +IW+    W+   L + E   G            R    H C  W  P+ GH K+N DA   
Subjt:  TKTNIQSKGIDINPMMER-----------------PPMDIWS----WMTDNLSKKELETGCIIIKPPAPSKARNHTSHAC--WERPKLGHWKLNSDAAWN

Query:  KDKGCGGLGWVVRDSSGSTICFGMKTIYKEWL
           G  GL  VVRD  G  I   + ++ + W+
Subjt:  KDKGCGGLGWVVRDSSGSTICFGMKTIYKEWL

B8BN96 Reverse transcriptase domain-containing protein8.0e-2129.29Show/hide
Query:  DNNDWNEDLIRQNFIPQDANDILNMPTGGKDSKDEIFWHPVKNGIFLVKSAYHLATDTISNLEASQSDERKSSSLWKSIWAMDSLPRTKVCVWKILNDII
        ++  W+   I Q F   DA  ILN+    +  +D I WHP KNG+F V+SAY LA   ++  E+S S     +  W+ IW      + K+  W++ ++ +
Subjt:  DNNDWNEDLIRQNFIPQDANDILNMPTGGKDSKDEIFWHPVKNGIFLVKSAYHLATDTISNLEASQSDERKSSSLWKSIWAMDSLPRTKVCVWKILNDII

Query:  STKTN---------------IQSKGIDINPMMERPPMDIWSWM-----------TDNLSKKELETGCIIIKPPAPSKARNHTSHACWERPKLGHWKLNSD
        +T                  I  K     P  E     I S++            D +  K +     +   P      NH    CWERPK G  KLN D
Subjt:  STKTN---------------IQSKGIDINPMMERPPMDIWSWM-----------TDNLSKKELETGCIIIKPPAPSKARNHTSHACWERPKLGHWKLNSD

Query:  AAWNKDKGCGGLGWVVRDSSGSTICFGMKTIYKEWLVNLLEA--KAIAEGLNEIIHTCVRERIPLEVETDALGVIKVING
         +++   G GGLG ++R+S+G  I    K +  E   N LE+  +A  EGL   IH  +   +P++VETD   V++++ G
Subjt:  AAWNKDKGCGGLGWVVRDSSGSTICFGMKTIYKEWLVNLLEA--KAIAEGLNEIIHTCVRERIPLEVETDALGVIKVING

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.5e-0726.38Show/hide
Query:  VWKILNDIISTKTNIQSKGIDINPMMERPPMDIWSWMTDNLSKKELETGCIIIKPPAPSKARNHTSHACWERPKLGHWKLNSDAAWNKDKGCGGLGWVVR
        +WK  N+++      + K  D   ++ R   D   W T    ++ELE      K   P   RN +    W+ P     K N+DA W  +    G+GW++R
Subjt:  VWKILNDIISTKTNIQSKGIDINPMMERPPMDIWSWMTDNLSKKELETGCIIIKPPAPSKARNHTSHACWERPKLGHWKLNSDAAWNKDKGCGGLGWVVR

Query:  DSSGSTICFGMKTIYKEWLVNLLEAKAIAEGLNEIIHTCVRERIP-LEVETDALGVIKVINGD
        + SG  +  G + + +    N+LEA+   E L   + T  R     +  E+DA  ++ ++N D
Subjt:  DSSGSTICFGMKTIYKEWLVNLLEAKAIAEGLNEIIHTCVRERIP-LEVETDALGVIKVINGD

AT4G29090.1 Ribonuclease H-like superfamily protein2.1e-0530Show/hide
Query:  NHTSHACWERPKLGHWKLNSDAAWNKDKGCGGLGWVVRDSSGSTICFGMKTIYKEWLVNLLEAKAIAEGLNEIIHTCVRERIPLEV-ETDALGVIKVING
        N +S   W  P     K N+DA WN+D    G+GWV+R+  G     G + + K  L ++LEA+   E +   + +  R +    + E+D+  +I+++N 
Subjt:  NHTSHACWERPKLGHWKLNSDAAWNKDKGCGGLGWVVRDSSGSTICFGMKTIYKEWLVNLLEAKAIAEGLNEIIHTCVRERIPLEV-ETDALGVIKVING

Query:  DA--SSISPT
        D    S+ PT
Subjt:  DA--SSISPT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGACAACAACGATTGGAATGAGGACCTTATTAGACAAAACTTCATCCCCCAAGACGCAAATGACATTTTAAACATGCCTACGGGAGGGAAGGACTCAAAAGACGA
GATTTTCTGGCACCCGGTCAAGAATGGAATATTCTTGGTAAAGAGTGCGTACCATCTAGCGACCGACACAATTTCCAATTTGGAAGCTTCTCAATCGGATGAAAGAAAAT
CCTCTTCCCTTTGGAAGAGCATTTGGGCTATGGACTCTCTTCCTAGGACTAAAGTTTGTGTGTGGAAGATCCTAAACGATATCATCTCTACCAAGACCAACATTCAATCC
AAGGGGATCGATATCAATCCAATGATGGAGCGGCCTCCAATGGACATATGGAGTTGGATGACTGATAATCTATCAAAGAAGGAGCTGGAAACAGGATGCATAATCATTAA
ACCACCGGCTCCGTCGAAGGCGAGGAACCACACGAGTCACGCTTGCTGGGAGAGACCGAAACTGGGCCATTGGAAATTGAATTCGGATGCCGCTTGGAACAAGGATAAAG
GTTGCGGAGGGCTGGGTTGGGTGGTCCGTGACTCGTCTGGGTCCACGATCTGCTTCGGAATGAAGACAATTTACAAAGAATGGCTGGTTAATCTTCTGGAAGCGAAAGCA
ATTGCTGAAGGCCTCAATGAAATTATTCATACCTGCGTCAGAGAACGTATTCCGCTGGAAGTTGAAACGGATGCGTTGGGGGTGATTAAAGTGATCAACGGAGACGCGAG
CTCGATCTCTCCAACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGACAACAACGATTGGAATGAGGACCTTATTAGACAAAACTTCATCCCCCAAGACGCAAATGACATTTTAAACATGCCTACGGGAGGGAAGGACTCAAAAGACGA
GATTTTCTGGCACCCGGTCAAGAATGGAATATTCTTGGTAAAGAGTGCGTACCATCTAGCGACCGACACAATTTCCAATTTGGAAGCTTCTCAATCGGATGAAAGAAAAT
CCTCTTCCCTTTGGAAGAGCATTTGGGCTATGGACTCTCTTCCTAGGACTAAAGTTTGTGTGTGGAAGATCCTAAACGATATCATCTCTACCAAGACCAACATTCAATCC
AAGGGGATCGATATCAATCCAATGATGGAGCGGCCTCCAATGGACATATGGAGTTGGATGACTGATAATCTATCAAAGAAGGAGCTGGAAACAGGATGCATAATCATTAA
ACCACCGGCTCCGTCGAAGGCGAGGAACCACACGAGTCACGCTTGCTGGGAGAGACCGAAACTGGGCCATTGGAAATTGAATTCGGATGCCGCTTGGAACAAGGATAAAG
GTTGCGGAGGGCTGGGTTGGGTGGTCCGTGACTCGTCTGGGTCCACGATCTGCTTCGGAATGAAGACAATTTACAAAGAATGGCTGGTTAATCTTCTGGAAGCGAAAGCA
ATTGCTGAAGGCCTCAATGAAATTATTCATACCTGCGTCAGAGAACGTATTCCGCTGGAAGTTGAAACGGATGCGTTGGGGGTGATTAAAGTGATCAACGGAGACGCGAG
CTCGATCTCTCCAACCTGA
Protein sequenceShow/hide protein sequence
MDDNNDWNEDLIRQNFIPQDANDILNMPTGGKDSKDEIFWHPVKNGIFLVKSAYHLATDTISNLEASQSDERKSSSLWKSIWAMDSLPRTKVCVWKILNDIISTKTNIQS
KGIDINPMMERPPMDIWSWMTDNLSKKELETGCIIIKPPAPSKARNHTSHACWERPKLGHWKLNSDAAWNKDKGCGGLGWVVRDSSGSTICFGMKTIYKEWLVNLLEAKA
IAEGLNEIIHTCVRERIPLEVETDALGVIKVINGDASSISPT