; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027918 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027918
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-directed RNA polymerase V subunit 5C-like
Genome locationscaffold2:38164546..38166267
RNA-Seq ExpressionSpg027918
SyntenySpg027918
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8661093.1 hypothetical protein F3Y22_tig00116939pilonHSYRG00213 [Hibiscus syriacus]1.1e-1432Show/hide
Query:  ERVAFSSEHINNVYELRDIPDAEGNALLDCLDDDFLSAVLLAVARPGAKWDGHGTAR-TLKSQLLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCI
        +++ F+S  IN+ + L+D+ D       +  D +    VL  +     +W+G  T+R ++  + L   A  W H++KN++MPT+H+ T+SL R++L++ I
Subjt:  ERVAFSSEHINNVYELRDIPDAEGNALLDCLDDDFLSAVLLAVARPGAKWDGHGTAR-TLKSQLLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCI

Query:  MKGTPIDLGRILVETLRQTAAKPKGARFCPSLVTSLCRSSNLVPAADEEI
        M   PID+G I+V+ +     K   A   P+L+T+LCR   +   A +EI
Subjt:  MKGTPIDLGRILVETLRQTAAKPKGARFCPSLVTSLCRSSNLVPAADEEI

MCH80834.1 hypothetical protein [Trifolium medium]8.7e-1531.08Show/hide
Query:  VAFSSEHINNVYELRDIPDAEGNALLDCLDDDFLSAVLLAVARPGAKWDGHGTAR--TLKSQLLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCIM
        + +S+ +INN Y L+   D E   L+D + D+ L+AV+  +  PG +W          +K   L  E   W   +K+ I+PTTH+ T++  R++L++CIM
Subjt:  VAFSSEHINNVYELRDIPDAEGNALLDCLDDDFLSAVLLAVARPGAKWDGHGTAR--TLKSQLLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCIM

Query:  KGTPIDLGRILVETLRQTAAKPKGARFCPSLVTSLCRSSNLVPAADEE
        +  PI++GRI+ + +   + + +G  + P L+T+LC++  +   A +E
Subjt:  KGTPIDLGRILVETLRQTAAKPKGARFCPSLVTSLCRSSNLVPAADEE

PON50458.1 hypothetical protein PanWU01x14_223230, partial [Parasponia andersonii]1.9e-1430.85Show/hide
Query:  DDWGKFQEERVAFSSEHINNVYELRDIPDAEGNALLDCLDDDFLSAVLLAVARPGAKWD--GHGTARTLKSQLLDFEATCWMHWVKNRIMPTTHDATLSL
        DD    +  +V  S+E IN +Y L D+ D E +  ++ + +  L+ VL  VA  GA+W+    G    L+S  L+  A  W H++K+R++PTTH   +S 
Subjt:  DDWGKFQEERVAFSSEHINNVYELRDIPDAEGNALLDCLDDDFLSAVLLAVARPGAKWD--GHGTARTLKSQLLDFEATCWMHWVKNRIMPTTHDATLSL

Query:  QRVILVYCIMKGTPIDLGRILVETLRQTAAKPKGARFCPSLVTSLCRSSNLVPAADEEIRTMRKDFDDQWWGRVTSTRDGRLQGSSQPIAPASQPTEPTP
        +RV+L+Y ++ G  I++GR++   +   AA+  GA F PSL+  +CR++      +EE      + D     R+             P  P+ QP+   P
Subjt:  QRVILVYCIMKGTPIDLGRILVETLRQTAAKPKGARFCPSLVTSLCRSSNLVPAADEEIRTMRKDFDDQWWGRVTSTRDGRLQGSSQPIAPASQPTEPTP

Query:  T
        T
Subjt:  T

PON62892.1 hypothetical protein PanWU01x14_135680 [Parasponia andersonii]1.1e-1431.68Show/hide
Query:  DDWGKFQEERVAFSSEHINNVYELRDIPDAEGNALLDCLDDDFLSAVLLAVARPGAKWD--GHGTARTLKSQLLDFEATCWMHWVKNRIMPTTHDATLSL
        DD    +  +V  S+E IN +Y L D P  E +  ++ + +  L+ VL  VA  GA+W+    G    L+S  L+  A  W H++K+R++PTTH  T+S 
Subjt:  DDWGKFQEERVAFSSEHINNVYELRDIPDAEGNALLDCLDDDFLSAVLLAVARPGAKWD--GHGTARTLKSQLLDFEATCWMHWVKNRIMPTTHDATLSL

Query:  QRVILVYCIMKGTPIDLGRILVETLRQTAAKPKGARFCPSLVTSLCRSSNLVPAADEEIRTMRKDFDDQWWGRVTS---TRDGRLQGSSQPIAPASQPTE
        +RV+L+Y ++ G  I++G+I+   +   AA+  GA F PSL+T +C ++      +EE      + D     R+             SS+P A +S  T 
Subjt:  QRVILVYCIMKGTPIDLGRILVETLRQTAAKPKGARFCPSLVTSLCRSSNLVPAADEEIRTMRKDFDDQWWGRVTS---TRDGRLQGSSQPIAPASQPTE

Query:  PT
         T
Subjt:  PT

XP_024995361.1 formin-like protein 3 [Cynara cardunculus var. scolymus]3.0e-1530.39Show/hide
Query:  VAFSSEHINNVYELRDIPDAEGNALLDCLDDDFLSAVLLAVARPGAKWDGHGTARTLKSQLLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCIMKG
        V++S   IN++ EL     ++ + L     D+ L  +L  VA  G  W   G AR LK+Q L  EA  W +++++ I P +HD  L L+RV+++YCI++ 
Subjt:  VAFSSEHINNVYELRDIPDAEGNALLDCLDDDFLSAVLLAVARPGAKWDGHGTARTLKSQLLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCIMKG

Query:  TPIDLGRILVETLRQTAAKPKGARFCPSLVTSLCRSSNLVPAADEEIRTMRKDFDDQWWGRVTSTRDGRLQGSSQPIAPAS
         P D+GR++   ++    +  G    PSL+  L + + ++ A  +++ +M K   D    +    R  R+  + QP AP S
Subjt:  TPIDLGRILVETLRQTAAKPKGARFCPSLVTSLCRSSNLVPAADEEIRTMRKDFDDQWWGRVTSTRDGRLQGSSQPIAPAS

TrEMBL top hitse value%identityAlignment
A0A2P5AGA5 Uncharacterized protein (Fragment)1.6e-1432.11Show/hide
Query:  RVAFSSEHINNVYELRDIPDAEGNALLDCLDDDFLSAVLLAVARPGAKWD--GHGTARTLKSQLLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCI
        +V++S E IN V+ L D P  E +  ++ + +  L  VL  VA  GA+W+    G    ++S L    A  W H++K+ ++PTTH  T+S  R++L++ +
Subjt:  RVAFSSEHINNVYELRDIPDAEGNALLDCLDDDFLSAVLLAVARPGAKWD--GHGTARTLKSQLLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCI

Query:  MKGTPIDLGRILVETLRQTAAKPKGARFCPSLVTSLCRSSNLVPAADEEIRTMRKDFDDQWWGRVTS---TRDGRLQGSSQPIAPASQPT
        + G  I++GR++   +R  AA+  GA F PSL+T LCR++      +EE      + D     R+T    T   +   SS+P   +S  T
Subjt:  MKGTPIDLGRILVETLRQTAAKPKGARFCPSLVTSLCRSSNLVPAADEEIRTMRKDFDDQWWGRVTS---TRDGRLQGSSQPIAPASQPT

A0A2P5BNT0 Uncharacterized protein (Fragment)9.4e-1530.85Show/hide
Query:  DDWGKFQEERVAFSSEHINNVYELRDIPDAEGNALLDCLDDDFLSAVLLAVARPGAKWD--GHGTARTLKSQLLDFEATCWMHWVKNRIMPTTHDATLSL
        DD    +  +V  S+E IN +Y L D+ D E +  ++ + +  L+ VL  VA  GA+W+    G    L+S  L+  A  W H++K+R++PTTH   +S 
Subjt:  DDWGKFQEERVAFSSEHINNVYELRDIPDAEGNALLDCLDDDFLSAVLLAVARPGAKWD--GHGTARTLKSQLLDFEATCWMHWVKNRIMPTTHDATLSL

Query:  QRVILVYCIMKGTPIDLGRILVETLRQTAAKPKGARFCPSLVTSLCRSSNLVPAADEEIRTMRKDFDDQWWGRVTSTRDGRLQGSSQPIAPASQPTEPTP
        +RV+L+Y ++ G  I++GR++   +   AA+  GA F PSL+  +CR++      +EE      + D     R+             P  P+ QP+   P
Subjt:  QRVILVYCIMKGTPIDLGRILVETLRQTAAKPKGARFCPSLVTSLCRSSNLVPAADEEIRTMRKDFDDQWWGRVTSTRDGRLQGSSQPIAPASQPTEPTP

Query:  T
        T
Subjt:  T

A0A2P5CPE8 Uncharacterized protein5.5e-1531.68Show/hide
Query:  DDWGKFQEERVAFSSEHINNVYELRDIPDAEGNALLDCLDDDFLSAVLLAVARPGAKWD--GHGTARTLKSQLLDFEATCWMHWVKNRIMPTTHDATLSL
        DD    +  +V  S+E IN +Y L D P  E +  ++ + +  L+ VL  VA  GA+W+    G    L+S  L+  A  W H++K+R++PTTH  T+S 
Subjt:  DDWGKFQEERVAFSSEHINNVYELRDIPDAEGNALLDCLDDDFLSAVLLAVARPGAKWD--GHGTARTLKSQLLDFEATCWMHWVKNRIMPTTHDATLSL

Query:  QRVILVYCIMKGTPIDLGRILVETLRQTAAKPKGARFCPSLVTSLCRSSNLVPAADEEIRTMRKDFDDQWWGRVTS---TRDGRLQGSSQPIAPASQPTE
        +RV+L+Y ++ G  I++G+I+   +   AA+  GA F PSL+T +C ++      +EE      + D     R+             SS+P A +S  T 
Subjt:  QRVILVYCIMKGTPIDLGRILVETLRQTAAKPKGARFCPSLVTSLCRSSNLVPAADEEIRTMRKDFDDQWWGRVTS---TRDGRLQGSSQPIAPASQPTE

Query:  PT
         T
Subjt:  PT

A0A392M2J7 Uncharacterized protein (Fragment)4.2e-1531.08Show/hide
Query:  VAFSSEHINNVYELRDIPDAEGNALLDCLDDDFLSAVLLAVARPGAKWDGHGTAR--TLKSQLLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCIM
        + +S+ +INN Y L+   D E   L+D + D+ L+AV+  +  PG +W          +K   L  E   W   +K+ I+PTTH+ T++  R++L++CIM
Subjt:  VAFSSEHINNVYELRDIPDAEGNALLDCLDDDFLSAVLLAVARPGAKWDGHGTAR--TLKSQLLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCIM

Query:  KGTPIDLGRILVETLRQTAAKPKGARFCPSLVTSLCRSSNLVPAADEE
        +  PI++GRI+ + +   + + +G  + P L+T+LC++  +   A +E
Subjt:  KGTPIDLGRILVETLRQTAAKPKGARFCPSLVTSLCRSSNLVPAADEE

A0A6A2WM54 Uncharacterized protein5.5e-1532Show/hide
Query:  ERVAFSSEHINNVYELRDIPDAEGNALLDCLDDDFLSAVLLAVARPGAKWDGHGTAR-TLKSQLLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCI
        +++ F+S  IN+ + L+D+ D       +  D +    VL  +     +W+G  T+R ++  + L   A  W H++KN++MPT+H+ T+SL R++L++ I
Subjt:  ERVAFSSEHINNVYELRDIPDAEGNALLDCLDDDFLSAVLLAVARPGAKWDGHGTAR-TLKSQLLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCI

Query:  MKGTPIDLGRILVETLRQTAAKPKGARFCPSLVTSLCRSSNLVPAADEEI
        M   PID+G I+V+ +     K   A   P+L+T+LCR   +   A +EI
Subjt:  MKGTPIDLGRILVETLRQTAAKPKGARFCPSLVTSLCRSSNLVPAADEEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGATTCCCAAAACCGTTCGGTTGGTGGCTACGCAGATGACGCCTCACCTTCATCACCAGAGGTTGAAGGACCACTTAGAGACGAAAGTTCCTCATCTAGCGAGGA
AAATACGAACCAAACCGAGGAGGAGCAAAAGCAAGACCCCATGGATACTAAGGAAAACGAGGTTGTCGACCTCGAGCAACCACCCATCACCATGACCAACCCTACAGAGG
TGCTCGATATTGCACCTCTGGACACCTCGACCTTCGTCGTTCAACCCGTCAACCTTCAACCCGCCCAAAATCTTTCCACCCCTCGAAACCTAACTCCATTTCCATCGCCC
TTCCCCTCTGTTCCCATTCTTTTTCCACCACCAGACTCTTCAGCTTCACTCGCATCCGACTCCGTCCCTTCATCTTCTTCTCCTCCCGCAAGCATTTCCCATCCACCATC
CACCTCAGCGCAAACCACTTCGCCGCAGTTTTCTGAGCGGGAAGTGACCGCAGGGAACTCCCTAATGGGAGAACTAGGCGAGGACGGCAAAGAAATTCATCTGCGAAAAG
ACAAGCAAGCGGAAGATCCGATCATCGCAGAAATTGTCGCAACTAACTTAGCAATCATTGCGGCAGCCATGGAAGTTTCTGATTCCGAGGATGAGCTCCCCCTTACTCAT
CGCCGCAACATCCAGTCCACGGGGGTAGTCATCCGTGAACCTTCTAAAAAACCTGCGGCGGCCCCCAACAAGAAAAGGAAAGCGCCCACAGCATCCAAAGGCAAAGGAAA
AGAAAAAGTGGGCGCAGCCAAAGAAAAGGTGGGTGACGACTGGGGCAAATTCCAAGAAGAGAGAGTCGCATTTTCCTCCGAGCACATCAACAATGTGTACGAGCTGCGAG
ATATCCCTGACGCAGAAGGAAATGCACTCCTCGACTGCCTCGATGATGACTTCCTGAGCGCAGTACTTCTTGCGGTGGCAAGACCTGGGGCCAAATGGGACGGCCACGGC
ACTGCGAGGACCCTGAAGTCACAGCTGCTCGATTTTGAGGCCACCTGTTGGATGCATTGGGTGAAGAATCGCATCATGCCCACAACGCATGATGCCACATTGAGCCTGCA
ACGGGTAATCCTTGTCTATTGCATTATGAAGGGAACCCCAATTGACCTAGGCCGCATCCTCGTCGAAACCTTGCGCCAGACTGCCGCAAAACCTAAGGGCGCAAGATTTT
GCCCTAGCCTTGTCACATCTTTATGTCGCTCATCCAATCTCGTGCCCGCAGCAGATGAAGAAATCCGAACCATGCGGAAGGATTTCGACGACCAATGGTGGGGGCGCGTG
ACCAGCACTCGCGATGGACGATTGCAAGGAAGCTCGCAGCCAATAGCCCCTGCATCCCAACCTACCGAGCCCACGCCTACGCCTGAAGCACAAAAGAAGAAAAGGCGCAA
GCAAACCACAGGCAGAAACCCTCGACCAGTCGCAAGGACCCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGATTCCCAAAACCGTTCGGTTGGTGGCTACGCAGATGACGCCTCACCTTCATCACCAGAGGTTGAAGGACCACTTAGAGACGAAAGTTCCTCATCTAGCGAGGA
AAATACGAACCAAACCGAGGAGGAGCAAAAGCAAGACCCCATGGATACTAAGGAAAACGAGGTTGTCGACCTCGAGCAACCACCCATCACCATGACCAACCCTACAGAGG
TGCTCGATATTGCACCTCTGGACACCTCGACCTTCGTCGTTCAACCCGTCAACCTTCAACCCGCCCAAAATCTTTCCACCCCTCGAAACCTAACTCCATTTCCATCGCCC
TTCCCCTCTGTTCCCATTCTTTTTCCACCACCAGACTCTTCAGCTTCACTCGCATCCGACTCCGTCCCTTCATCTTCTTCTCCTCCCGCAAGCATTTCCCATCCACCATC
CACCTCAGCGCAAACCACTTCGCCGCAGTTTTCTGAGCGGGAAGTGACCGCAGGGAACTCCCTAATGGGAGAACTAGGCGAGGACGGCAAAGAAATTCATCTGCGAAAAG
ACAAGCAAGCGGAAGATCCGATCATCGCAGAAATTGTCGCAACTAACTTAGCAATCATTGCGGCAGCCATGGAAGTTTCTGATTCCGAGGATGAGCTCCCCCTTACTCAT
CGCCGCAACATCCAGTCCACGGGGGTAGTCATCCGTGAACCTTCTAAAAAACCTGCGGCGGCCCCCAACAAGAAAAGGAAAGCGCCCACAGCATCCAAAGGCAAAGGAAA
AGAAAAAGTGGGCGCAGCCAAAGAAAAGGTGGGTGACGACTGGGGCAAATTCCAAGAAGAGAGAGTCGCATTTTCCTCCGAGCACATCAACAATGTGTACGAGCTGCGAG
ATATCCCTGACGCAGAAGGAAATGCACTCCTCGACTGCCTCGATGATGACTTCCTGAGCGCAGTACTTCTTGCGGTGGCAAGACCTGGGGCCAAATGGGACGGCCACGGC
ACTGCGAGGACCCTGAAGTCACAGCTGCTCGATTTTGAGGCCACCTGTTGGATGCATTGGGTGAAGAATCGCATCATGCCCACAACGCATGATGCCACATTGAGCCTGCA
ACGGGTAATCCTTGTCTATTGCATTATGAAGGGAACCCCAATTGACCTAGGCCGCATCCTCGTCGAAACCTTGCGCCAGACTGCCGCAAAACCTAAGGGCGCAAGATTTT
GCCCTAGCCTTGTCACATCTTTATGTCGCTCATCCAATCTCGTGCCCGCAGCAGATGAAGAAATCCGAACCATGCGGAAGGATTTCGACGACCAATGGTGGGGGCGCGTG
ACCAGCACTCGCGATGGACGATTGCAAGGAAGCTCGCAGCCAATAGCCCCTGCATCCCAACCTACCGAGCCCACGCCTACGCCTGAAGCACAAAAGAAGAAAAGGCGCAA
GCAAACCACAGGCAGAAACCCTCGACCAGTCGCAAGGACCCCTTAA
Protein sequenceShow/hide protein sequence
MSDSQNRSVGGYADDASPSSPEVEGPLRDESSSSSEENTNQTEEEQKQDPMDTKENEVVDLEQPPITMTNPTEVLDIAPLDTSTFVVQPVNLQPAQNLSTPRNLTPFPSP
FPSVPILFPPPDSSASLASDSVPSSSSPPASISHPPSTSAQTTSPQFSEREVTAGNSLMGELGEDGKEIHLRKDKQAEDPIIAEIVATNLAIIAAAMEVSDSEDELPLTH
RRNIQSTGVVIREPSKKPAAAPNKKRKAPTASKGKGKEKVGAAKEKVGDDWGKFQEERVAFSSEHINNVYELRDIPDAEGNALLDCLDDDFLSAVLLAVARPGAKWDGHG
TARTLKSQLLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCIMKGTPIDLGRILVETLRQTAAKPKGARFCPSLVTSLCRSSNLVPAADEEIRTMRKDFDDQWWGRV
TSTRDGRLQGSSQPIAPASQPTEPTPTPEAQKKKRRKQTTGRNPRPVARTP