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Spg027923 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027923
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold2:39665151..39671974
RNA-Seq ExpressionSpg027923
SyntenySpg027923
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061346.1 uncharacterized protein E6C27_scaffold749G00290 [Cucumis melo var. makuwa]1.2e-1564.38Show/hide
Query:  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPMQELMMRVENLEK
        MSS+    K + +RLVEIEEQ+LYL EVPD+IR++ESR+DEIS KAD +DAVAGRV+G+P+QEL+ RV+ LE+
Subjt:  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPMQELMMRVENLEK

KAA0065910.1 senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa]7.3e-1665.28Show/hide
Query:  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPMQELMMRVENLE
        MSS     K++ +RLVEIEEQ+LYL EVPD+IR++ESRLDEIS K D +DAVAGR++G+P+QEL+ RVE LE
Subjt:  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPMQELMMRVENLE

XP_022150099.1 uncharacterized protein LOC111018360 [Momordica charantia]3.3e-1662.16Show/hide
Query:  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPMQELMMRVENLEKR
        MS+TKQL+K+ V+RLVEIEEQLLYLREVPD +R +E+R+DE S K  ++DAV  R+DG+P+Q++ MRVE LE +
Subjt:  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPMQELMMRVENLEKR

XP_022154605.1 uncharacterized protein LOC111021829 [Momordica charantia]4.3e-1662.16Show/hide
Query:  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPMQELMMRVENLEKR
        MS+TKQL+K+ V+RLVEIEEQLLYLREVPD++R +E+R+DE S K  ++DAV  RVDG+P+Q++ MRVE  E +
Subjt:  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPMQELMMRVENLEKR

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]6.0e-1853.4Show/hide
Query:  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPMQELMMRVENLE---KRGGGCEIG-----PLCHRRSGIEL
        MS+TKQL K+ ++RLVEIEE+LL+LRE+PD +R+VESRLDEISTKAD +D V  R+DG+ ++ELM+RVE LE   KR    E G      + H    +E 
Subjt:  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPMQELMMRVENLE---KRGGGCEIG-----PLCHRRSGIEL

Query:  ADL
         D+
Subjt:  ADL

TrEMBL top hitse value%identityAlignment
A0A5A7V4C9 Uncharacterized protein6.0e-1664.38Show/hide
Query:  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPMQELMMRVENLEK
        MSS+    K + +RLVEIEEQ+LYL EVPD+IR++ESR+DEIS KAD +DAVAGRV+G+P+QEL+ RV+ LE+
Subjt:  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPMQELMMRVENLEK

A0A5A7VFC8 Senescence-specific cysteine protease sag393.5e-1665.28Show/hide
Query:  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPMQELMMRVENLE
        MSS     K++ +RLVEIEEQ+LYL EVPD+IR++ESRLDEIS K D +DAVAGR++G+P+QEL+ RVE LE
Subjt:  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPMQELMMRVENLE

A0A6J1D906 Reverse transcriptase1.6e-1662.16Show/hide
Query:  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPMQELMMRVENLEKR
        MS+TKQL+K+ V+RLVEIEEQLLYLREVPD +R +E+R+DE S K  ++DAV  R+DG+P+Q++ MRVE LE +
Subjt:  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPMQELMMRVENLEKR

A0A6J1DK29 uncharacterized protein LOC1110218292.1e-1662.16Show/hide
Query:  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPMQELMMRVENLEKR
        MS+TKQL+K+ V+RLVEIEEQLLYLREVPD++R +E+R+DE S K  ++DAV  RVDG+P+Q++ MRVE  E +
Subjt:  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPMQELMMRVENLEKR

A0A6J1DLQ6 uncharacterized protein LOC1110223202.9e-1853.4Show/hide
Query:  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPMQELMMRVENLE---KRGGGCEIG-----PLCHRRSGIEL
        MS+TKQL K+ ++RLVEIEE+LL+LRE+PD +R+VESRLDEISTKAD +D V  R+DG+ ++ELM+RVE LE   KR    E G      + H    +E 
Subjt:  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPMQELMMRVENLE---KRGGGCEIG-----PLCHRRSGIEL

Query:  ADL
         D+
Subjt:  ADL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCGACCAAGCAGTTGGCGAAGACCCGCGTGGAACGTTTGGTAGAGATCGAAGAACAGTTACTCTACCTGAGGGAAGTCCCTGATGCTATTCGGTTCGTGGAATC
TCGGCTGGATGAGATTTCGACTAAAGCCGACAAAGTTGATGCGGTAGCTGGCCGTGTGGATGGGATGCCCATGCAGGAATTGATGATGAGGGTTGAGAACCTTGAAAAAC
GGGGTGGAGGTTGTGAGATAGGCCCTTTGTGCCACCGGCGATCCGGAATTGAGTTGGCTGACTTACTCGTGGGCGAGAGTAAGTGCCGCACAATCACTTGCGAGTTCGAA
AAGAGTGCGATTGTGACACTTCGCATAAATTCATGTGAAATTGGTGGCATATTGAAGACTCCTTCAAGATTGGAAGACTTCAAGCTCCAAGAATCAGTTGAAGCTCCAGA
CTCGAGGTCAAGCGTTCCAGCCCTCGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTCGACCAAGCAGTTGGCGAAGACCCGCGTGGAACGTTTGGTAGAGATCGAAGAACAGTTACTCTACCTGAGGGAAGTCCCTGATGCTATTCGGTTCGTGGAATC
TCGGCTGGATGAGATTTCGACTAAAGCCGACAAAGTTGATGCGGTAGCTGGCCGTGTGGATGGGATGCCCATGCAGGAATTGATGATGAGGGTTGAGAACCTTGAAAAAC
GGGGTGGAGGTTGTGAGATAGGCCCTTTGTGCCACCGGCGATCCGGAATTGAGTTGGCTGACTTACTCGTGGGCGAGAGTAAGTGCCGCACAATCACTTGCGAGTTCGAA
AAGAGTGCGATTGTGACACTTCGCATAAATTCATGTGAAATTGGTGGCATATTGAAGACTCCTTCAAGATTGGAAGACTTCAAGCTCCAAGAATCAGTTGAAGCTCCAGA
CTCGAGGTCAAGCGTTCCAGCCCTCGAGTGA
Protein sequenceShow/hide protein sequence
MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPMQELMMRVENLEKRGGGCEIGPLCHRRSGIELADLLVGESKCRTITCEFE
KSAIVTLRINSCEIGGILKTPSRLEDFKLQESVEAPDSRSSVPALE