; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027926 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027926
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold2:39684028..39699302
RNA-Seq ExpressionSpg027926
SyntenySpg027926
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031665.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.5e-2044.97Show/hide
Query:  SQEKYDSIEDENEGWTLVVRRKKQKKSYARKESHLFRDSKRKVKSQRKKGKKKTRRSKPVVEESEDFFCPPQPITLAEYFPRCFIDDSQGETLETVTCHI
        S+EK   IE+++EGW +V RRKK+K +   KES  +R+ +R  K+Q+ K KKKTR+ K V EE +DF  P + +TLA++FP  F+ D Q E    V CH 
Subjt:  SQEKYDSIEDENEGWTLVVRRKKQKKSYARKESHLFRDSKRKVKSQRKKGKKKTRRSKPVVEESEDFFCPPQPITLAEYFPRCFIDDSQGETLETVTCHI

Query:  VDVVEDDDVLASSSGTVAGSGDLSSFSIKYLLSLPQEAKSVLINALIES
        ++V+E++ +   S      S  LS F++  LLSLPQE K++LINAL+ S
Subjt:  VDVVEDDDVLASSSGTVAGSGDLSSFSIKYLLSLPQEAKSVLINALIES

KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]9.2e-2143.62Show/hide
Query:  SQEKYDSIEDENEGWTLVVRRKKQKKSYARKESHLFRDSKRKVKSQRKKGKKKTRRSKPVVEESEDFFCPPQPITLAEYFPRCFIDDSQGETLETVTCHI
        SQEK   IE+++EGWT+V RRKK+K +  +KE   +R+ ++  K+Q+ K KKKTR+ K + EE +DF    + +TLA++FP  F+ D Q E    V CH 
Subjt:  SQEKYDSIEDENEGWTLVVRRKKQKKSYARKESHLFRDSKRKVKSQRKKGKKKTRRSKPVVEESEDFFCPPQPITLAEYFPRCFIDDSQGETLETVTCHI

Query:  VDVVEDDDVLASSSGTVAGSGDLSSFSIKYLLSLPQEAKSVLINALIES
        ++ +E++++   S      S DLS F++  LLSLPQE K +LINAL+ S
Subjt:  VDVVEDDDVLASSSGTVAGSGDLSSFSIKYLLSLPQEAKSVLINALIES

KAA0046265.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.4e-2144.3Show/hide
Query:  SQEKYDSIEDENEGWTLVVRRKKQKKSYARKESHLFRDSKRKVKSQRKKGKKKTRRSKPVVEESEDFFCPPQPITLAEYFPRCFIDDSQGETLETVTCHI
        S  K  SIE++NEGW +V RR K+K +  +KES  +R+ +R+ K+Q+ K KKKTR+ K V EE +DF  P + +T+A+ FP  F+ D Q E  E +TCH 
Subjt:  SQEKYDSIEDENEGWTLVVRRKKQKKSYARKESHLFRDSKRKVKSQRKKGKKKTRRSKPVVEESEDFFCPPQPITLAEYFPRCFIDDSQGETLETVTCHI

Query:  VDVVEDDDVLASSSGTVAGSGDLSSFSIKYLLSLPQEAKSVLINALIES
        ++  E++ + + S      S +LS F++  LLSLPQE K++LINAL+ S
Subjt:  VDVVEDDDVLASSSGTVAGSGDLSSFSIKYLLSLPQEAKSVLINALIES

KAA0054506.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.7e-2046.98Show/hide
Query:  SQEKYDSIEDENEGWTLVVRRKKQKKSYARKESHLFRDSKRKVKSQRKKGKKKTRRSKPVVEESEDFFCPPQPITLAEYFPRCFIDDSQGETLETVTCHI
        SQEK  SIE+++EGW +V  +KK+K +  +KESH + + +R  K+ RK  KKKTR+ K V EE +DF  P + +TLA++F   F+ D Q E LE V CH 
Subjt:  SQEKYDSIEDENEGWTLVVRRKKQKKSYARKESHLFRDSKRKVKSQRKKGKKKTRRSKPVVEESEDFFCPPQPITLAEYFPRCFIDDSQGETLETVTCHI

Query:  VDVVEDDDVLASSSGTVAGSGDLSSFSIKYLLSLPQEAKSVLINALIES
        ++ VE++ +  S S    G  DLS F++  LLSLPQE K++LINAL+ S
Subjt:  VDVVEDDDVLASSSGTVAGSGDLSSFSIKYLLSLPQEAKSVLINALIES

KAA0056780.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.4e-2144.59Show/hide
Query:  QEKYDSIEDENEGWTLVVRRKKQKKSYARKESHLFRDSKRKVKSQRKKGKKKTRRSKPVVEESEDFFCPPQPITLAEYFPRCFIDDSQGETLETVTCHIV
        QEK  SIE ++EGWT+V RRKK+K +  +KE   +R+ +R  K+Q+ K KKKT++ K + EE +DF    + +TLA +FP  F+ D Q E  E V CH +
Subjt:  QEKYDSIEDENEGWTLVVRRKKQKKSYARKESHLFRDSKRKVKSQRKKGKKKTRRSKPVVEESEDFFCPPQPITLAEYFPRCFIDDSQGETLETVTCHIV

Query:  DVVEDDDVLASSSGTVAGSGDLSSFSIKYLLSLPQEAKSVLINALIES
        D +E++ +   S      S DL  F++  LLSLPQE K++LINAL+ S
Subjt:  DVVEDDDVLASSSGTVAGSGDLSSFSIKYLLSLPQEAKSVLINALIES

TrEMBL top hitse value%identityAlignment
A0A5A7SRA6 Ty3-gypsy retrotransposon protein1.7e-2044.97Show/hide
Query:  SQEKYDSIEDENEGWTLVVRRKKQKKSYARKESHLFRDSKRKVKSQRKKGKKKTRRSKPVVEESEDFFCPPQPITLAEYFPRCFIDDSQGETLETVTCHI
        S+EK   IE+++EGW +V RRKK+K +   KES  +R+ +R  K+Q+ K KKKTR+ K V EE +DF  P + +TLA++FP  F+ D Q E    V CH 
Subjt:  SQEKYDSIEDENEGWTLVVRRKKQKKSYARKESHLFRDSKRKVKSQRKKGKKKTRRSKPVVEESEDFFCPPQPITLAEYFPRCFIDDSQGETLETVTCHI

Query:  VDVVEDDDVLASSSGTVAGSGDLSSFSIKYLLSLPQEAKSVLINALIES
        ++V+E++ +   S      S  LS F++  LLSLPQE K++LINAL+ S
Subjt:  VDVVEDDDVLASSSGTVAGSGDLSSFSIKYLLSLPQEAKSVLINALIES

A0A5A7TY01 Ty3-gypsy retrotransposon protein1.2e-2144.3Show/hide
Query:  SQEKYDSIEDENEGWTLVVRRKKQKKSYARKESHLFRDSKRKVKSQRKKGKKKTRRSKPVVEESEDFFCPPQPITLAEYFPRCFIDDSQGETLETVTCHI
        S  K  SIE++NEGW +V RR K+K +  +KES  +R+ +R+ K+Q+ K KKKTR+ K V EE +DF  P + +T+A+ FP  F+ D Q E  E +TCH 
Subjt:  SQEKYDSIEDENEGWTLVVRRKKQKKSYARKESHLFRDSKRKVKSQRKKGKKKTRRSKPVVEESEDFFCPPQPITLAEYFPRCFIDDSQGETLETVTCHI

Query:  VDVVEDDDVLASSSGTVAGSGDLSSFSIKYLLSLPQEAKSVLINALIES
        ++  E++ + + S      S +LS F++  LLSLPQE K++LINAL+ S
Subjt:  VDVVEDDDVLASSSGTVAGSGDLSSFSIKYLLSLPQEAKSVLINALIES

A0A5D3BE72 Ty3-gypsy retrotransposon protein2.6e-2144.59Show/hide
Query:  QEKYDSIEDENEGWTLVVRRKKQKKSYARKESHLFRDSKRKVKSQRKKGKKKTRRSKPVVEESEDFFCPPQPITLAEYFPRCFIDDSQGETLETVTCHIV
        QEK  SIE ++EGWT+V RRKK+K +  +KE   +R+ +R  K+Q+ K KKKT++ K + EE +DF    + +TLA +FP  F+ D Q E  E V CH +
Subjt:  QEKYDSIEDENEGWTLVVRRKKQKKSYARKESHLFRDSKRKVKSQRKKGKKKTRRSKPVVEESEDFFCPPQPITLAEYFPRCFIDDSQGETLETVTCHIV

Query:  DVVEDDDVLASSSGTVAGSGDLSSFSIKYLLSLPQEAKSVLINALIES
        D +E++ +   S      S DL  F++  LLSLPQE K++LINAL+ S
Subjt:  DVVEDDDVLASSSGTVAGSGDLSSFSIKYLLSLPQEAKSVLINALIES

A0A5D3BGX4 Retrotransposon gag protein1.3e-2046.98Show/hide
Query:  SQEKYDSIEDENEGWTLVVRRKKQKKSYARKESHLFRDSKRKVKSQRKKGKKKTRRSKPVVEESEDFFCPPQPITLAEYFPRCFIDDSQGETLETVTCHI
        SQEK  SIE+++EGW +V  +KK+K +  +KESH + + +R  K+ RK  KKKTR+ K V EE +DF  P + +TLA++F   F+ D Q E LE V CH 
Subjt:  SQEKYDSIEDENEGWTLVVRRKKQKKSYARKESHLFRDSKRKVKSQRKKGKKKTRRSKPVVEESEDFFCPPQPITLAEYFPRCFIDDSQGETLETVTCHI

Query:  VDVVEDDDVLASSSGTVAGSGDLSSFSIKYLLSLPQEAKSVLINALIES
        ++ VE++ +  S S    G  DLS F++  LLSLPQE K++LINAL+ S
Subjt:  VDVVEDDDVLASSSGTVAGSGDLSSFSIKYLLSLPQEAKSVLINALIES

A0A5D3BSG5 Uncharacterized protein4.4e-2143.62Show/hide
Query:  SQEKYDSIEDENEGWTLVVRRKKQKKSYARKESHLFRDSKRKVKSQRKKGKKKTRRSKPVVEESEDFFCPPQPITLAEYFPRCFIDDSQGETLETVTCHI
        SQEK   IE+++EGWT+V RRKK+K +  +KE   +R+ ++  K+Q+ K KKKTR+ K + EE +DF    + +TLA++FP  F+ D Q E    V CH 
Subjt:  SQEKYDSIEDENEGWTLVVRRKKQKKSYARKESHLFRDSKRKVKSQRKKGKKKTRRSKPVVEESEDFFCPPQPITLAEYFPRCFIDDSQGETLETVTCHI

Query:  VDVVEDDDVLASSSGTVAGSGDLSSFSIKYLLSLPQEAKSVLINALIES
        ++ +E++++   S      S DLS F++  LLSLPQE K +LINAL+ S
Subjt:  VDVVEDDDVLASSSGTVAGSGDLSSFSIKYLLSLPQEAKSVLINALIES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTTAAGCGGAGAAGATGAAGGGGCAACTCAGGAGACTCGAGAAGAAAGGTTGTGGGTTTTGAAGGCTTGTTCGGTGTTCCAGACCTGGGTTTTGAAGGCTTGTTC
CTGGATGCGCGACATTTTCAGATGCTTGGAATCTCAGATGATTGGAATTTTAGATATCCGGCATCTTCAGATAGTCACTAACGATTTCGTTGGATCGAGGGCTGGGTTTC
GTTGGATCGAGGGCTGGGATCGTTCCAGATCTGCCCTTCCAGTCACGATTTTGCTGGGTTTTCTCGTTGGATCTCGACTAGAACGAGGATGTGAAGCGGCGGCGAGGCGT
GCAATGGCAGTGCGAGGATGGCGAATTGAGATCAAGGAGGATCATACTCCTCTTGCTATTGCAAGTAGGATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAAGGTTGC
AGTCAAAGACAACCCGCTGTTCGAATCTATCATTCCAACATCTAAGCAGCCAAAGGATACACAAAATCCTGATGTGATGTCCATCATAATGGCTGATGTAGACCAGGATG
AAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGGATCCCAAGAAAAGTATGATTCCATTGAAGATGAGAATGAAGGTTGGACCCTTGTCGTTCGT
CGCAAAAAGCAAAAGAAAAGTTACGCACGGAAGGAGTCCCACCTATTTCGAGATAGTAAAAGAAAGGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGACAAGGAGGTC
AAAACCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGATGCTTTATCGATGATAGTCAAGGCGAGACACTTG
AAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCTTGCTAGCTCCTCGGGAACGGTGGCAGGTTCAGGAGACTTATCCTCCTTCAGCATAAAATAT
TTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCTTATTAATGCATTGATAGAGTCCGATGATGTGCAAGCATCCGACCTAAAAAAGGGTGAAACATCTACAAGCCTCGT
GAAACCTAAAGTTGTAAAGGATGAGAAGTGTTCACCTGTCCTACGATACGTCCCTTTATCTCGGCGTAAAAAAGATCACGAAGACGAAATTCGTAGTGCAGTTCCTTCAC
GAATGAAAAGAAAAACCTTTGTTACTATCGATATGGATGGTTCTTTGAAGAAGGCTTTGTTCTTCAAGTTCGGCAATTCACTCCCTCCAAGTTTGGCATCTCGTCTCAAG
TTCGGTGTTTCGCTTCTTCAAAGTCTGGCGTCTCACCCCTTCAAGTATGGCACCTTGTTTCCTCTAAAGTTTGCATTCTCCATGGTGACATATGGCGACCTCACTTCATG
TCAAAAGGTGATCACCCCTGTAGGAAACTACAGTCATCAAAGTGACTTGTCTAGACAGGTGGTGAAAACATTGGATAAGGCTGGGTACCTTGTCCTGGTGACACTATGGA
TACGGCTCGCTTTGTATATTGATACAAACGTAGTGATCCAACGCGTTCATGTAGTTGACATGCGAGTGGGGGTATCCTGTGCAATGAGTTTGCACAAAGACCGGACCGCG
AAATAG
mRNA sequenceShow/hide mRNA sequence
ATGATGTTAAGCGGAGAAGATGAAGGGGCAACTCAGGAGACTCGAGAAGAAAGGTTGTGGGTTTTGAAGGCTTGTTCGGTGTTCCAGACCTGGGTTTTGAAGGCTTGTTC
CTGGATGCGCGACATTTTCAGATGCTTGGAATCTCAGATGATTGGAATTTTAGATATCCGGCATCTTCAGATAGTCACTAACGATTTCGTTGGATCGAGGGCTGGGTTTC
GTTGGATCGAGGGCTGGGATCGTTCCAGATCTGCCCTTCCAGTCACGATTTTGCTGGGTTTTCTCGTTGGATCTCGACTAGAACGAGGATGTGAAGCGGCGGCGAGGCGT
GCAATGGCAGTGCGAGGATGGCGAATTGAGATCAAGGAGGATCATACTCCTCTTGCTATTGCAAGTAGGATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAAGGTTGC
AGTCAAAGACAACCCGCTGTTCGAATCTATCATTCCAACATCTAAGCAGCCAAAGGATACACAAAATCCTGATGTGATGTCCATCATAATGGCTGATGTAGACCAGGATG
AAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGGATCCCAAGAAAAGTATGATTCCATTGAAGATGAGAATGAAGGTTGGACCCTTGTCGTTCGT
CGCAAAAAGCAAAAGAAAAGTTACGCACGGAAGGAGTCCCACCTATTTCGAGATAGTAAAAGAAAGGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGACAAGGAGGTC
AAAACCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGATGCTTTATCGATGATAGTCAAGGCGAGACACTTG
AAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCTTGCTAGCTCCTCGGGAACGGTGGCAGGTTCAGGAGACTTATCCTCCTTCAGCATAAAATAT
TTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCTTATTAATGCATTGATAGAGTCCGATGATGTGCAAGCATCCGACCTAAAAAAGGGTGAAACATCTACAAGCCTCGT
GAAACCTAAAGTTGTAAAGGATGAGAAGTGTTCACCTGTCCTACGATACGTCCCTTTATCTCGGCGTAAAAAAGATCACGAAGACGAAATTCGTAGTGCAGTTCCTTCAC
GAATGAAAAGAAAAACCTTTGTTACTATCGATATGGATGGTTCTTTGAAGAAGGCTTTGTTCTTCAAGTTCGGCAATTCACTCCCTCCAAGTTTGGCATCTCGTCTCAAG
TTCGGTGTTTCGCTTCTTCAAAGTCTGGCGTCTCACCCCTTCAAGTATGGCACCTTGTTTCCTCTAAAGTTTGCATTCTCCATGGTGACATATGGCGACCTCACTTCATG
TCAAAAGGTGATCACCCCTGTAGGAAACTACAGTCATCAAAGTGACTTGTCTAGACAGGTGGTGAAAACATTGGATAAGGCTGGGTACCTTGTCCTGGTGACACTATGGA
TACGGCTCGCTTTGTATATTGATACAAACGTAGTGATCCAACGCGTTCATGTAGTTGACATGCGAGTGGGGGTATCCTGTGCAATGAGTTTGCACAAAGACCGGACCGCG
AAATAG
Protein sequenceShow/hide protein sequence
MMLSGEDEGATQETREERLWVLKACSVFQTWVLKACSWMRDIFRCLESQMIGILDIRHLQIVTNDFVGSRAGFRWIEGWDRSRSALPVTILLGFLVGSRLERGCEAAARR
AMAVRGWRIEIKEDHTPLAIASRISKLIEESSKDKVAVKDNPLFESIIPTSKQPKDTQNPDVMSIIMADVDQDERMAEMERKLNLLMKAGSQEKYDSIEDENEGWTLVVR
RKKQKKSYARKESHLFRDSKRKVKSQRKKGKKKTRRSKPVVEESEDFFCPPQPITLAEYFPRCFIDDSQGETLETVTCHIVDVVEDDDVLASSSGTVAGSGDLSSFSIKY
LLSLPQEAKSVLINALIESDDVQASDLKKGETSTSLVKPKVVKDEKCSPVLRYVPLSRRKKDHEDEIRSAVPSRMKRKTFVTIDMDGSLKKALFFKFGNSLPPSLASRLK
FGVSLLQSLASHPFKYGTLFPLKFAFSMVTYGDLTSCQKVITPVGNYSHQSDLSRQVVKTLDKAGYLVLVTLWIRLALYIDTNVVIQRVHVVDMRVGVSCAMSLHKDRTA
K