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Spg027944 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027944
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold2:39555818..39564762
RNA-Seq ExpressionSpg027944
SyntenySpg027944
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025994.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]2.3e-0562.22Show/hide
Query:  VSYAMTWVRVANTPTQHAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        V   ++ VRVA  PTQ+A+ FGDKTEW AG+  TQ+GIHSFP LG
Subjt:  VSYAMTWVRVANTPTQHAFLFGDKTEWEAGDMTTQEGIHSFPLLG

KAA0040839.1 uncharacterized protein E6C27_scaffold333G00600 [Cucumis melo var. makuwa]3.3e-0458.14Show/hide
Query:  VRVANTPTQHAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDES
        VRVA  PTQ+A+ FGDKT+W AG++ TQ+ IHSF  LG +  S
Subjt:  VRVANTPTQHAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDES

KAA0043328.1 gag/pol protein [Cucumis melo var. makuwa]5.1e-0560.98Show/hide
Query:  WVRVANTPTQHAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
        ++RVA  PTQ+A+ F DKTEW AG++ TQ+GIHSFP LG +
Subjt:  WVRVANTPTQHAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV

KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.1e-0673.68Show/hide
Query:  VRVANTPTQHAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        VRVA  PTQ+A+ FGDKTEW AG++ TQ+GIHSFPLLG
Subjt:  VRVANTPTQHAFLFGDKTEWEAGDMTTQEGIHSFPLLG

TYK27885.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]6.7e-0560.47Show/hide
Query:  WVRVANTPTQHAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDE
        ++RVA  PTQ+A+ F DKTEW AG++ TQ+GIH FP LG VD+
Subjt:  WVRVANTPTQHAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDE

TrEMBL top hitse value%identityAlignment
A0A5A7SJY0 Retrotransposon protein putative ty3-gypsy sub-class1.1e-0562.22Show/hide
Query:  VSYAMTWVRVANTPTQHAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        V   ++ VRVA  PTQ+A+ FGDKTEW AG+  TQ+GIHSFP LG
Subjt:  VSYAMTWVRVANTPTQHAFLFGDKTEWEAGDMTTQEGIHSFPLLG

A0A5A7THR9 Uncharacterized protein1.6e-0458.14Show/hide
Query:  VRVANTPTQHAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDES
        VRVA  PTQ+A+ FGDKT+W AG++ TQ+ IHSF  LG +  S
Subjt:  VRVANTPTQHAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDES

A0A5A7TKJ4 Gag/pol protein2.5e-0560.98Show/hide
Query:  WVRVANTPTQHAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
        ++RVA  PTQ+A+ F DKTEW AG++ TQ+GIHSFP LG +
Subjt:  WVRVANTPTQHAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV

A0A5A7VFG5 Ty1-copia retrotransposon protein1.0e-0673.68Show/hide
Query:  VRVANTPTQHAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        VRVA  PTQ+A+ FGDKTEW AG++ TQ+GIHSFPLLG
Subjt:  VRVANTPTQHAFLFGDKTEWEAGDMTTQEGIHSFPLLG

A0A5D3DX33 Retrovirus-related pol polyprotein from transposon tnt 1-943.2e-0560.47Show/hide
Query:  WVRVANTPTQHAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDE
        ++RVA  PTQ+A+ F DKTEW AG++ TQ+GIH FP LG VD+
Subjt:  WVRVANTPTQHAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAGCGGGGGTATCCTATGCAATGACATGGGTGAGAGTGGCCAATACGCCGACTCAACATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGAC
AACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTCCGTGATTACGAACACTCGTGAAGGATTGACTTACCGGTATAGGTCTATATCCGTGGACA
CAGAAATGTTCTACAGTGAGAAGAGTTCAGCTAGTTATAGCGGGGAAGATCAAATGGTGGTGTTCTTCGTTGTTGCAGAGCAATCAAGAATCATTCTTGAAGTATTCAGA
GTCGTCAACGGAGGTATAGAGAGTGCACAATCTATTGAATCAGTTGCTACTATTCCATCTCAGTCTCAGAAGGAGACCACCATAGAGCAGATGGAGGAGGCAGTGATCGC
CATTAACACCACGGTGACTGGCCATAGTGCAACCATTAAGAACATTGAAACTCAACTGGGACAATTGGTAAGTGTTGTAAACACAATGCAAAAAGGAAAAGCCCCAGTTG
AGCAGAAGACCTCAGATGGAATATTGCAAGGTCATCACTTTGCATCACGTGTTCTCGTGTTCTTGTCTTTGCCAGCATTTATGAGAAGATCATCATTCCAGGAGTTGGAT
TTGAATGCTTACGAGCGAATTATTAGTTCATTGGGTGTAATGTTTGCCATAATCTCGACTAAGGACCTTTGGTGGGAGCTGAAGCAAGGTCAAGGAGCGAGATTCAAGGC
GATAGCTCGAGGAGATCGTGATGGTGGCCTCAATGAGATAGAGTTTTTTCCCCTTTCTTTCCTTAACCTCAACACAAATGTCCAAAGGGGTGTTGTTGTCAATCGTGCGG
GAATGAGGGACCCCAGAACGTTTCGAGTTGGGGGCTGCACTATGTTGTCCTCGATTGTTGATGTAAAGGGATCGTCTAGAAGCTGTGAAGGAATGACACGTGCCAGTCAG
CTATTAATCCAACCTGTCTTGGCACTTAGTTACTTTACTCTTTCCTTCTCTTCTTTACGGCTTCAGTTTCCTTTAGAGTTGAATCTTGAGTTGAGTATTGTTCTGCTAAA
TTCTTCATTGATCAACAATTGGTATCAGAGCCTCCTCAAAAGAATTCTAGATACGCTTTCTGATAATCTTCTTCTTCCTCTGAACTGTAAAAGATCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGAGCGGGGGTATCCTATGCAATGACATGGGTGAGAGTGGCCAATACGCCGACTCAACATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGAC
AACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTCCGTGATTACGAACACTCGTGAAGGATTGACTTACCGGTATAGGTCTATATCCGTGGACA
CAGAAATGTTCTACAGTGAGAAGAGTTCAGCTAGTTATAGCGGGGAAGATCAAATGGTGGTGTTCTTCGTTGTTGCAGAGCAATCAAGAATCATTCTTGAAGTATTCAGA
GTCGTCAACGGAGGTATAGAGAGTGCACAATCTATTGAATCAGTTGCTACTATTCCATCTCAGTCTCAGAAGGAGACCACCATAGAGCAGATGGAGGAGGCAGTGATCGC
CATTAACACCACGGTGACTGGCCATAGTGCAACCATTAAGAACATTGAAACTCAACTGGGACAATTGGTAAGTGTTGTAAACACAATGCAAAAAGGAAAAGCCCCAGTTG
AGCAGAAGACCTCAGATGGAATATTGCAAGGTCATCACTTTGCATCACGTGTTCTCGTGTTCTTGTCTTTGCCAGCATTTATGAGAAGATCATCATTCCAGGAGTTGGAT
TTGAATGCTTACGAGCGAATTATTAGTTCATTGGGTGTAATGTTTGCCATAATCTCGACTAAGGACCTTTGGTGGGAGCTGAAGCAAGGTCAAGGAGCGAGATTCAAGGC
GATAGCTCGAGGAGATCGTGATGGTGGCCTCAATGAGATAGAGTTTTTTCCCCTTTCTTTCCTTAACCTCAACACAAATGTCCAAAGGGGTGTTGTTGTCAATCGTGCGG
GAATGAGGGACCCCAGAACGTTTCGAGTTGGGGGCTGCACTATGTTGTCCTCGATTGTTGATGTAAAGGGATCGTCTAGAAGCTGTGAAGGAATGACACGTGCCAGTCAG
CTATTAATCCAACCTGTCTTGGCACTTAGTTACTTTACTCTTTCCTTCTCTTCTTTACGGCTTCAGTTTCCTTTAGAGTTGAATCTTGAGTTGAGTATTGTTCTGCTAAA
TTCTTCATTGATCAACAATTGGTATCAGAGCCTCCTCAAAAGAATTCTAGATACGCTTTCTGATAATCTTCTTCTTCCTCTGAACTGTAAAAGATCGTGA
Protein sequenceShow/hide protein sequence
MRAGVSYAMTWVRVANTPTQHAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDESVITNTREGLTYRYRSISVDTEMFYSEKSSASYSGEDQMVVFFVVAEQSRIILEVFR
VVNGGIESAQSIESVATIPSQSQKETTIEQMEEAVIAINTTVTGHSATIKNIETQLGQLVSVVNTMQKGKAPVEQKTSDGILQGHHFASRVLVFLSLPAFMRRSSFQELD
LNAYERIISSLGVMFAIISTKDLWWELKQGQGARFKAIARGDRDGGLNEIEFFPLSFLNLNTNVQRGVVVNRAGMRDPRTFRVGGCTMLSSIVDVKGSSRSCEGMTRASQ
LLIQPVLALSYFTLSFSSLRLQFPLELNLELSIVLLNSSLINNWYQSLLKRILDTLSDNLLLPLNCKRS