CuGenDBv2

Gene ID	Spg027956
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	39S ribosomal protein L46, mitochondrial-like isoform X2
Genome location	scaffold2:44676597..44682406
RNA-Seq Expression	Spg027956
Synteny	Spg027956
Gene Ontology terms	GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR040008 - 39S ribosomal protein L46, mitochondrial

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022954202.1 39S ribosomal protein L46, mitochondrial-like isoform X1 [Cucurbita moschata]

2.1e-71

69.81

Show/hide

Query:  GKGDYQIDYVPAPRITEADKTNDRRAPPSVEQKRRRRSLENTAREPHTPPEPSASVTTRRRVRACEPPVSASAVWVCLALLSLQRALDRRLYLLLYGASI
        GKGDYQIDYVPAPRITEADKTNDR+                                                        SLQRALDRRLYLLLYGASI
Subjt:  GKGDYQIDYVPAPRITEADKTNDRRAPPSVEQKRRRRSLENTAREPHTPPEPSASVTTRRRVRACEPPVSASAVWVCLALLSLQRALDRRLYLLLYGASI

Query:  GAPDKKPVWHFPEKVYETEETLRKCAESALAFILGDLSHTYFVGNAPMAHMVVKPTETAQVPSLKRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFP
        GAPDKKPVWHFPEK YETEETLRKCAESAL  +LG LSHTYFVGNAPMAHMVV PTETAQVPSLKRFFFKSQVIATNKFNI KCEDFVWVTKDELMEYFP
Subjt:  GAPDKKPVWHFPEKVYETEETLRKCAESALAFILGDLSHTYFVGNAPMAHMVVKPTETAQVPSLKRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFP

Query:  DQAEFFKKMIIS
        DQAEFFKKMIIS
Subjt:  DQAEFFKKMIIS

XP_023518331.1 39S ribosomal protein L46, mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo]

1.2e-71

70.75

Show/hide

Query:  GKGDYQIDYVPAPRITEADKTNDRRAPPSVEQKRRRRSLENTAREPHTPPEPSASVTTRRRVRACEPPVSASAVWVCLALLSLQRALDRRLYLLLYGASI
        GKGDYQIDYVPAPRITEADKTNDR+                                                        SLQRALDRRLYLLLYGASI
Subjt:  GKGDYQIDYVPAPRITEADKTNDRRAPPSVEQKRRRRSLENTAREPHTPPEPSASVTTRRRVRACEPPVSASAVWVCLALLSLQRALDRRLYLLLYGASI

Query:  GAPDKKPVWHFPEKVYETEETLRKCAESALAFILGDLSHTYFVGNAPMAHMVVKPTETAQVPSLKRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFP
        GAPDKKPVWHFPEKVYETEETLRKCAESALA ILG LSHTYFVGNAPMAHM V PTETAQV SLKRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFP
Subjt:  GAPDKKPVWHFPEKVYETEETLRKCAESALAFILGDLSHTYFVGNAPMAHMVVKPTETAQVPSLKRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFP

Query:  DQAEFFKKMIIS
        DQAEFFKKMIIS
Subjt:  DQAEFFKKMIIS

XP_023518332.1 39S ribosomal protein L46, mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo]

1.2e-71

70.75

Show/hide

Query:  GKGDYQIDYVPAPRITEADKTNDRRAPPSVEQKRRRRSLENTAREPHTPPEPSASVTTRRRVRACEPPVSASAVWVCLALLSLQRALDRRLYLLLYGASI
        GKGDYQIDYVPAPRITEADKTNDR+                                                        SLQRALDRRLYLLLYGASI
Subjt:  GKGDYQIDYVPAPRITEADKTNDRRAPPSVEQKRRRRSLENTAREPHTPPEPSASVTTRRRVRACEPPVSASAVWVCLALLSLQRALDRRLYLLLYGASI

Query:  GAPDKKPVWHFPEKVYETEETLRKCAESALAFILGDLSHTYFVGNAPMAHMVVKPTETAQVPSLKRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFP
        GAPDKKPVWHFPEKVYETEETLRKCAESALA ILG LSHTYFVGNAPMAHM V PTETAQV SLKRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFP
Subjt:  GAPDKKPVWHFPEKVYETEETLRKCAESALAFILGDLSHTYFVGNAPMAHMVVKPTETAQVPSLKRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFP

Query:  DQAEFFKKMIIS
        DQAEFFKKMIIS
Subjt:  DQAEFFKKMIIS

XP_023518333.1 39S ribosomal protein L46, mitochondrial-like isoform X3 [Cucurbita pepo subsp. pepo]

1.2e-71

70.75

Show/hide

Query:  GKGDYQIDYVPAPRITEADKTNDRRAPPSVEQKRRRRSLENTAREPHTPPEPSASVTTRRRVRACEPPVSASAVWVCLALLSLQRALDRRLYLLLYGASI
        GKGDYQIDYVPAPRITEADKTNDR+                                                        SLQRALDRRLYLLLYGASI
Subjt:  GKGDYQIDYVPAPRITEADKTNDRRAPPSVEQKRRRRSLENTAREPHTPPEPSASVTTRRRVRACEPPVSASAVWVCLALLSLQRALDRRLYLLLYGASI

Query:  GAPDKKPVWHFPEKVYETEETLRKCAESALAFILGDLSHTYFVGNAPMAHMVVKPTETAQVPSLKRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFP
        GAPDKKPVWHFPEKVYETEETLRKCAESALA ILG LSHTYFVGNAPMAHM V PTETAQV SLKRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFP
Subjt:  GAPDKKPVWHFPEKVYETEETLRKCAESALAFILGDLSHTYFVGNAPMAHMVVKPTETAQVPSLKRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFP

Query:  DQAEFFKKMIIS
        DQAEFFKKMIIS
Subjt:  DQAEFFKKMIIS

XP_023547487.1 39S ribosomal protein L46, mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo]

2.1e-71

69.81

Show/hide

Query:  GKGDYQIDYVPAPRITEADKTNDRRAPPSVEQKRRRRSLENTAREPHTPPEPSASVTTRRRVRACEPPVSASAVWVCLALLSLQRALDRRLYLLLYGASI
        GKGDYQIDYVPAPRITEADKTNDR+                                                        SLQRALDRRLYLLLYGASI
Subjt:  GKGDYQIDYVPAPRITEADKTNDRRAPPSVEQKRRRRSLENTAREPHTPPEPSASVTTRRRVRACEPPVSASAVWVCLALLSLQRALDRRLYLLLYGASI

Query:  GAPDKKPVWHFPEKVYETEETLRKCAESALAFILGDLSHTYFVGNAPMAHMVVKPTETAQVPSLKRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFP
        GAPDKKPVWHFPEK YETEETLRKCAESAL  +LG LSHTYFVGNAPMAHMVV PTETAQVPSLKRFFFKSQVIATNKFNI KCEDFVWVTKDELMEYFP
Subjt:  GAPDKKPVWHFPEKVYETEETLRKCAESALAFILGDLSHTYFVGNAPMAHMVVKPTETAQVPSLKRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFP

Query:  DQAEFFKKMIIS
        DQAEFFKKMIIS
Subjt:  DQAEFFKKMIIS

TrEMBL top hits

e value

%identity

Alignment

A0A6J1GQE8 39S ribosomal protein L46, mitochondrial-like isoform X1

1.0e-71

69.81

Show/hide

Query:  GKGDYQIDYVPAPRITEADKTNDRRAPPSVEQKRRRRSLENTAREPHTPPEPSASVTTRRRVRACEPPVSASAVWVCLALLSLQRALDRRLYLLLYGASI
        GKGDYQIDYVPAPRITEADKTNDR+                                                        SLQRALDRRLYLLLYGASI
Subjt:  GKGDYQIDYVPAPRITEADKTNDRRAPPSVEQKRRRRSLENTAREPHTPPEPSASVTTRRRVRACEPPVSASAVWVCLALLSLQRALDRRLYLLLYGASI

Query:  GAPDKKPVWHFPEKVYETEETLRKCAESALAFILGDLSHTYFVGNAPMAHMVVKPTETAQVPSLKRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFP
        GAPDKKPVWHFPEK YETEETLRKCAESAL  +LG LSHTYFVGNAPMAHMVV PTETAQVPSLKRFFFKSQVIATNKFNI KCEDFVWVTKDELMEYFP
Subjt:  GAPDKKPVWHFPEKVYETEETLRKCAESALAFILGDLSHTYFVGNAPMAHMVVKPTETAQVPSLKRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFP

Query:  DQAEFFKKMIIS
        DQAEFFKKMIIS
Subjt:  DQAEFFKKMIIS

A0A6J1GQF1 39S ribosomal protein L46, mitochondrial-like isoform X2

1.0e-71

69.81

Show/hide

Query:  GKGDYQIDYVPAPRITEADKTNDRRAPPSVEQKRRRRSLENTAREPHTPPEPSASVTTRRRVRACEPPVSASAVWVCLALLSLQRALDRRLYLLLYGASI
        GKGDYQIDYVPAPRITEADKTNDR+                                                        SLQRALDRRLYLLLYGASI
Subjt:  GKGDYQIDYVPAPRITEADKTNDRRAPPSVEQKRRRRSLENTAREPHTPPEPSASVTTRRRVRACEPPVSASAVWVCLALLSLQRALDRRLYLLLYGASI

Query:  GAPDKKPVWHFPEKVYETEETLRKCAESALAFILGDLSHTYFVGNAPMAHMVVKPTETAQVPSLKRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFP
        GAPDKKPVWHFPEK YETEETLRKCAESAL  +LG LSHTYFVGNAPMAHMVV PTETAQVPSLKRFFFKSQVIATNKFNI KCEDFVWVTKDELMEYFP
Subjt:  GAPDKKPVWHFPEKVYETEETLRKCAESALAFILGDLSHTYFVGNAPMAHMVVKPTETAQVPSLKRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFP

Query:  DQAEFFKKMIIS
        DQAEFFKKMIIS
Subjt:  DQAEFFKKMIIS

A0A6J1JQ58 39S ribosomal protein L46, mitochondrial-like isoform X2

1.3e-71

69.34

Show/hide

Query:  GKGDYQIDYVPAPRITEADKTNDRRAPPSVEQKRRRRSLENTAREPHTPPEPSASVTTRRRVRACEPPVSASAVWVCLALLSLQRALDRRLYLLLYGASI
        GKGDYQIDYVPAPRITEADKTNDR+                                                        SLQRALDRRLYLLLYGASI
Subjt:  GKGDYQIDYVPAPRITEADKTNDRRAPPSVEQKRRRRSLENTAREPHTPPEPSASVTTRRRVRACEPPVSASAVWVCLALLSLQRALDRRLYLLLYGASI

Query:  GAPDKKPVWHFPEKVYETEETLRKCAESALAFILGDLSHTYFVGNAPMAHMVVKPTETAQVPSLKRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFP
        GAPDKKP+WHFPEK YETEETLRKCAESAL  +LG LSHTYFVGNAPMAHMVV PTETAQVPSLKRFFFKSQVIATNKFNI KCEDFVWVTKDELMEYFP
Subjt:  GAPDKKPVWHFPEKVYETEETLRKCAESALAFILGDLSHTYFVGNAPMAHMVVKPTETAQVPSLKRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFP

Query:  DQAEFFKKMIIS
        DQAEFFKKMIIS
Subjt:  DQAEFFKKMIIS

A0A6J1JTU9 54S ribosomal protein L17, mitochondrial-like isoform X1

1.3e-71

69.34

Show/hide

Query:  GKGDYQIDYVPAPRITEADKTNDRRAPPSVEQKRRRRSLENTAREPHTPPEPSASVTTRRRVRACEPPVSASAVWVCLALLSLQRALDRRLYLLLYGASI
        GKGDYQIDYVPAPRITEADKTNDR+                                                        SLQRALDRRLYLLLYGASI
Subjt:  GKGDYQIDYVPAPRITEADKTNDRRAPPSVEQKRRRRSLENTAREPHTPPEPSASVTTRRRVRACEPPVSASAVWVCLALLSLQRALDRRLYLLLYGASI

Query:  GAPDKKPVWHFPEKVYETEETLRKCAESALAFILGDLSHTYFVGNAPMAHMVVKPTETAQVPSLKRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFP
        GAPDKKP+WHFPEK YETEETLRKCAESAL  +LG LSHTYFVGNAPMAHMVV PTETAQVPSLKRFFFKSQVIATNKFNI KCEDFVWVTKDELMEYFP
Subjt:  GAPDKKPVWHFPEKVYETEETLRKCAESALAFILGDLSHTYFVGNAPMAHMVVKPTETAQVPSLKRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFP

Query:  DQAEFFKKMIIS
        DQAEFFKKMIIS
Subjt:  DQAEFFKKMIIS

A0A6J1JZI9 39S ribosomal protein L46, mitochondrial-like isoform X3

1.3e-71

69.34

Show/hide

Query:  GKGDYQIDYVPAPRITEADKTNDRRAPPSVEQKRRRRSLENTAREPHTPPEPSASVTTRRRVRACEPPVSASAVWVCLALLSLQRALDRRLYLLLYGASI
        GKGDYQIDYVPAPRITEADKTNDR+                                                        SLQRALDRRLYLLLYGASI
Subjt:  GKGDYQIDYVPAPRITEADKTNDRRAPPSVEQKRRRRSLENTAREPHTPPEPSASVTTRRRVRACEPPVSASAVWVCLALLSLQRALDRRLYLLLYGASI

Query:  GAPDKKPVWHFPEKVYETEETLRKCAESALAFILGDLSHTYFVGNAPMAHMVVKPTETAQVPSLKRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFP
        GAPDKKP+WHFPEK YETEETLRKCAESAL  +LG LSHTYFVGNAPMAHMVV PTETAQVPSLKRFFFKSQVIATNKFNI KCEDFVWVTKDELMEYFP
Subjt:  GAPDKKPVWHFPEKVYETEETLRKCAESALAFILGDLSHTYFVGNAPMAHMVVKPTETAQVPSLKRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFP

Query:  DQAEFFKKMIIS
        DQAEFFKKMIIS
Subjt:  DQAEFFKKMIIS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G14620.1 decoy

3.5e-56

52.36

Show/hide

Query:  KGDYQIDYVPAPRITEADKTNDRRAPPSVEQKRRRRSLENTAREPHTPPEPSASVTTRRRVRACEPPVSASAVWVCLALLSLQRALDRRLYLLLYGASIG
        KG+YQ+DYVPAPRITEADK NDR+                                                        SL RALD++LYLL++G   G
Subjt:  KGDYQIDYVPAPRITEADKTNDRRAPPSVEQKRRRRSLENTAREPHTPPEPSASVTTRRRVRACEPPVSASAVWVCLALLSLQRALDRRLYLLLYGASIG

Query:  APDKKPVWHFPEKVYETEETLRKCAESALAFILGDLSHTYFVGNAPMAHMVVKPT-ETAQVPSLKRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFP
        A   KPVWHFPEKVY++E TLRKCAESAL  ++GDL+HTYFVGNAPMAHM ++PT E   +PS KRFFFK  V+A +K++I  CEDFVWVTKDEL+E+FP
Subjt:  APDKKPVWHFPEKVYETEETLRKCAESALAFILGDLSHTYFVGNAPMAHMVVKPT-ETAQVPSLKRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFP

Query:  DQAEFFKKMIIS
        +QAEFF KMIIS
Subjt:  DQAEFFKKMIIS

AT1G14620.2 decoy

6.4e-34

43.33

Show/hide

Query:  KGDYQIDYVPAPRITEADKTNDRRAPPSVEQKRRRRSLENTAREPHTPPEPSASVTTRRRVRACEPPVSASAVWVCLALLSLQRALDRRLYLLLYGASIG
        KG+YQ+DYVPAPRITEADK NDR+                                                        SL RALD++LYLL++G   G
Subjt:  KGDYQIDYVPAPRITEADKTNDRRAPPSVEQKRRRRSLENTAREPHTPPEPSASVTTRRRVRACEPPVSASAVWVCLALLSLQRALDRRLYLLLYGASIG

Query:  APDKKPVWHFPEKVYETEETLRKCAESALAFILGDLSHTYFVGNAPMAHMVVKPTETAQVPSLKRFFFKSQVIATNKFNI
        A   KPVWHFPEKVY++E TLRKCAESAL  ++GDL+HTYFVGNAPMAHM ++PTE  ++P L  +    Q+  ++   I
Subjt:  APDKKPVWHFPEKVYETEETLRKCAESALAFILGDLSHTYFVGNAPMAHMVVKPTETAQVPSLKRFFFKSQVIATNKFNI

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCAAAGCAGTGTCTCAATGCTACAAATGCGCACATGAGGCTAACGGAGATTCAATTCCGAAGCGTTGAGATGCTTGAAGATGTGGGTGTATGGAGGATGGAGAAAGT
TGTTCTGTGGAGGTTAGAAGCTGTGGTGAAGCGAGGGATTACGAAGAGGGAGGAGCAGTGGGGAAAAGGTGACTACCAAATTGATTATGTTCCAGCTCCACGAATCACGG
AAGCCGACAAAACAAATGATAGGAGAGCGCCGCCGTCAGTAGAGCAGAAGCGCCGTCGCCGATCACTGGAAAACACCGCGCGTGAGCCACACACGCCACCGGAACCTTCT
GCCTCCGTCACCACGCGCCGACGCGTGAGGGCGTGTGAGCCGCCCGTTTCCGCTTCCGCCGTCTGGGTTTGTCTCGCCTTGTTGTCACTCCAGAGAGCACTTGATAGAAG
ACTCTATCTTCTTCTCTATGGTGCCTCTATTGGGGCACCTGATAAGAAGCCTGTCTGGCACTTTCCAGAAAAAGTATATGAGACCGAAGAGACACTACGGAAATGTGCAG
AATCTGCCTTAGCGTTCATCCTTGGAGATCTTTCTCATACATATTTTGTCGGAAATGCTCCGATGGCGCATATGGTTGTAAAACCTACAGAAACTGCACAAGTTCCATCT
TTGAAGCGGTTCTTTTTCAAGTCTCAAGTGATTGCAACCAATAAATTCAATATTGAGAAATGTGAAGATTTTGTCTGGGTTACAAAGGATGAATTGATGGAGTATTTTCC
TGATCAAGCTGAATTTTTCAAGAAGATGATCATTAGTTGA

mRNA sequence

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Protein sequence

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MSKQCLNATNAHMRLTEIQFRSVEMLEDVGVWRMEKVVLWRLEAVVKRGITKREEQWGKGDYQIDYVPAPRITEADKTNDRRAPPSVEQKRRRRSLENTAREPHTPPEPS
ASVTTRRRVRACEPPVSASAVWVCLALLSLQRALDRRLYLLLYGASIGAPDKKPVWHFPEKVYETEETLRKCAESALAFILGDLSHTYFVGNAPMAHMVVKPTETAQVPS
LKRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS

Spg027956 (gene) of Sponge gourd (cylindrica) v1 genome