; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027978 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027978
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionnuclear transcription factor Y subunit B-4-like
Genome locationscaffold2:41937196..41937603
RNA-Seq ExpressionSpg027978
SyntenySpg027978
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0048046 - apoplast (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0004565 - beta-galactosidase activity (molecular function)
GO:0030246 - carbohydrate binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold
IPR027113 - Transcription factor NFYB/HAP3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050888.1 beta-galactosidase 15-like [Cucumis melo var. makuwa]6.9e-3972.88Show/hide
Query:  MEDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKS
        M +NWE LQLP ANV R+MKKI+PQ  KISKEAK+TMQECA EFISFVTSEAA+KCH ENRRTLNGDDIYWAFGSLGLDNYAEAS+  LLKFREAERIK+
Subjt:  MEDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKS

Query:  CNKPSRFQERENDDDNND
         +K   FQ  ++  ++++
Subjt:  CNKPSRFQERENDDDNND

KAG6590402.1 Nuclear transcription factor Y subunit B-4, partial [Cucurbita argyrosperma subsp. sororia]1.3e-3769.47Show/hide
Query:  EDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKSC
        E+N + LQLP ANVGRLMKKILPQ +KISKEAK TMQECATEFISFVTSEAAEKCHK+NRRTLNGDDI WAFGS GLDNYAEASAKYLLK+R+ ERI + 
Subjt:  EDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKSC

Query:  NKPSRFQERENDDDNNDD--ESYRANKGESS
         K +   E++  D   +   E Y    GE+S
Subjt:  NKPSRFQERENDDDNNDD--ESYRANKGESS

XP_008451143.1 PREDICTED: beta-galactosidase 15-like [Cucumis melo]1.8e-3969.29Show/hide
Query:  MEDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKS
        M +NWE LQLP ANV R+MKKI+PQ  KISKEAK+TMQECA EFISFVTSEAA+KCH ENRRTLNGDDIYWAFGSLGLDNYAEAS+  LLKFREAERIK+
Subjt:  MEDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKS

Query:  CNKPSRFQERENDDDNNDDESYRANKG
         +K   FQ  ++  +++D   +  ++G
Subjt:  CNKPSRFQERENDDDNNDDESYRANKG

XP_022145916.1 nuclear transcription factor Y subunit B-4-like [Momordica charantia]5.3e-4775.91Show/hide
Query:  EDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKSC
        +DNWE+LQLPSANVGRLMKKI+PQTSKISKEAKQTMQECATEFISFVTSEAAEKC++ENRRTLNG+DIYWAFG+LGLDNYA+A+AKYLL +R+A+ +K  
Subjt:  EDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKSC

Query:  NKPSRFQ---ERENDDDNNDDES--YRANKGESSRTN
        NK   FQ   E  N DDN DD+   Y ANKGESS+TN
Subjt:  NKPSRFQ---ERENDDDNNDDES--YRANKGESSRTN

XP_038880507.1 nuclear transcription factor Y subunit B-4-like [Benincasa hispida]3.9e-4276.86Show/hide
Query:  MEDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKS
        M +NWE LQLP ANVGR+MKKILPQ +KISKEAK+TMQECA+EFISFV SEAAEKCHKENRRTLNGDDI WA GS GLDNYAE SAKYLLKFREAERIK+
Subjt:  MEDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKS

Query:  CNKPSRFQ--ERENDDDNNDD
         NK   FQ   ++ +DD+ND+
Subjt:  CNKPSRFQ--ERENDDDNNDD

TrEMBL top hitse value%identityAlignment
A0A0A0LZ17 CBFD_NFYB_HMF domain-containing protein1.8e-3777.67Show/hide
Query:  MEDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKS
        M +NWE LQLP ANV R+MKKI+P+  KISKEAK+ MQECA EFI+FVTSEAA++C  ENRRTLNGDDIYWAF SLGLDNYAEAS+KYLLKFREAERIK+
Subjt:  MEDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKS

Query:  CNK
         +K
Subjt:  CNK

A0A1S3BQ87 Beta-galactosidase8.8e-4069.29Show/hide
Query:  MEDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKS
        M +NWE LQLP ANV R+MKKI+PQ  KISKEAK+TMQECA EFISFVTSEAA+KCH ENRRTLNGDDIYWAFGSLGLDNYAEAS+  LLKFREAERIK+
Subjt:  MEDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKS

Query:  CNKPSRFQERENDDDNNDDESYRANKG
         +K   FQ  ++  +++D   +  ++G
Subjt:  CNKPSRFQERENDDDNNDDESYRANKG

A0A5D3CFV4 Beta-galactosidase 15-like3.4e-3972.88Show/hide
Query:  MEDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKS
        M +NWE LQLP ANV R+MKKI+PQ  KISKEAK+TMQECA EFISFVTSEAA+KCH ENRRTLNGDDIYWAFGSLGLDNYAEAS+  LLKFREAERIK+
Subjt:  MEDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKS

Query:  CNKPSRFQERENDDDNND
         +K   FQ  ++  ++++
Subjt:  CNKPSRFQERENDDDNND

A0A6J1CXT8 nuclear transcription factor Y subunit B-4-like2.6e-4775.91Show/hide
Query:  EDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKSC
        +DNWE+LQLPSANVGRLMKKI+PQTSKISKEAKQTMQECATEFISFVTSEAAEKC++ENRRTLNG+DIYWAFG+LGLDNYA+A+AKYLL +R+A+ +K  
Subjt:  EDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKSC

Query:  NKPSRFQ---ERENDDDNNDDES--YRANKGESSRTN
        NK   FQ   E  N DDN DD+   Y ANKGESS+TN
Subjt:  NKPSRFQ---ERENDDDNNDDES--YRANKGESSRTN

A0A6J1HDY6 nuclear transcription factor Y subunit B-4-like8.3e-3870.54Show/hide
Query:  EDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKSC
        E+N + LQLP ANVGRLMKKILPQ +KISKEAK TMQECATEFISFVTSEAAEKCHK+NRRTLNGDDI WAFGS GLDNYAEASAKYLLK+R+ ERI + 
Subjt:  EDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKSC

Query:  NKPSRFQERENDDDNNDDESYRANKGESS
         K +   E++  D   + E Y    GE+S
Subjt:  NKPSRFQERENDDDNNDDESYRANKGESS

SwissProt top hitse value%identityAlignment
O04027 Nuclear transcription factor Y subunit B-43.2e-3161.02Show/hide
Query:  LPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKS-CNKPSRFQ
        LP ANVGRLMK+ILP  +KISKEAKQT+QECATEFISFVT EA+EKCH+ENR+T+NGDDI+WA  +LGLDNYA+A  ++L K+REAER ++  NK S   
Subjt:  LPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKS-CNKPSRFQ

Query:  ERENDDDNNDDESYRANK
          E + +   D   ++ K
Subjt:  ERENDDDNNDDESYRANK

O82248 Nuclear transcription factor Y subunit B-51.4e-2664.37Show/hide
Query:  LPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAE
        LP ANVGR+MK ILP  +K+SKEAK+TMQEC +EFISFVT EA++KCHKE R+T+NGDDI WA  +LG D+YA    KYL ++R  E
Subjt:  LPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAE

P25207 Nuclear transcription factor Y subunit beta3.8e-2457.95Show/hide
Query:  LQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREA
        + LP ANV R+MK  +PQT KI+K+AK+ +QEC +EFISF+TSEA+E+CH+E R+T+NG+DI +A  +LG D+Y E    YL KFREA
Subjt:  LQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREA

Q32KW0 Nuclear transcription factor Y subunit beta3.8e-2457.95Show/hide
Query:  LQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREA
        + LP ANV R+MK  +PQT KI+K+AK+ +QEC +EFISF+TSEA+E+CH+E R+T+NG+DI +A  +LG D+Y E    YL KFREA
Subjt:  LQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREA

Q9FGJ3 Nuclear transcription factor Y subunit B-21.0e-2460.92Show/hide
Query:  LPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAE
        LP ANV R+MKK LP  +KISK+AK+TMQEC +EFISFVT EA++KC KE R+T+NGDD+ WA  +LG ++Y E    YL +FRE E
Subjt:  LPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAE

Arabidopsis top hitse value%identityAlignment
AT1G09030.1 nuclear factor Y, subunit B42.3e-3261.02Show/hide
Query:  LPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKS-CNKPSRFQ
        LP ANVGRLMK+ILP  +KISKEAKQT+QECATEFISFVT EA+EKCH+ENR+T+NGDDI+WA  +LGLDNYA+A  ++L K+REAER ++  NK S   
Subjt:  LPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKS-CNKPSRFQ

Query:  ERENDDDNNDDESYRANK
          E + +   D   ++ K
Subjt:  ERENDDDNNDDESYRANK

AT2G38880.2 nuclear factor Y, subunit B11.8e-2456.32Show/hide
Query:  LPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAE
        LP AN+ R+MKK LP   KI K+AK T+QEC +EFISF+TSEA++KC KE R+T+NGDD+ WA  +LG ++Y E    YL ++RE E
Subjt:  LPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAE

AT2G47810.1 nuclear factor Y, subunit B51.0e-2764.37Show/hide
Query:  LPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAE
        LP ANVGR+MK ILP  +K+SKEAK+TMQEC +EFISFVT EA++KCHKE R+T+NGDDI WA  +LG D+YA    KYL ++R  E
Subjt:  LPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAE

AT4G14540.1 nuclear factor Y, subunit B34.7e-2556.04Show/hide
Query:  LPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKS
        LP ANV R+MKK LP  +KISK+AK+T+QEC +EFISF+T EA++KC +E R+T+NGDD+ WA  +LG ++Y E    YL K+RE E  K+
Subjt:  LPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKS

AT5G47640.1 nuclear factor Y, subunit B27.2e-2660.92Show/hide
Query:  LPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAE
        LP ANV R+MKK LP  +KISK+AK+TMQEC +EFISFVT EA++KC KE R+T+NGDD+ WA  +LG ++Y E    YL +FRE E
Subjt:  LPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATGGAAGACAATTGGGAAAGGCTTCAGCTGCCAAGTGCTAATGTTGGCAGACTGATGAAGAAGATACTTCCCCAAACATCCAAGATTTCAAAAGAAGCCAAACA
AACAATGCAAGAATGTGCAACAGAATTCATCAGCTTTGTCACAAGTGAAGCAGCAGAAAAGTGTCACAAAGAGAATCGTAGAACTCTCAATGGAGATGATATTTATTGGG
CTTTTGGTTCTCTTGGCTTAGATAATTATGCTGAGGCTTCCGCCAAGTACTTGCTCAAGTTTAGAGAAGCTGAGAGAATCAAGAGTTGTAACAAACCCAGTAGATTTCAA
GAACGGGAAAACGACGACGACAACAACGACGACGAATCTTATCGGGCTAACAAGGGTGAAAGTTCTCGAACAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAATGGAAGACAATTGGGAAAGGCTTCAGCTGCCAAGTGCTAATGTTGGCAGACTGATGAAGAAGATACTTCCCCAAACATCCAAGATTTCAAAAGAAGCCAAACA
AACAATGCAAGAATGTGCAACAGAATTCATCAGCTTTGTCACAAGTGAAGCAGCAGAAAAGTGTCACAAAGAGAATCGTAGAACTCTCAATGGAGATGATATTTATTGGG
CTTTTGGTTCTCTTGGCTTAGATAATTATGCTGAGGCTTCCGCCAAGTACTTGCTCAAGTTTAGAGAAGCTGAGAGAATCAAGAGTTGTAACAAACCCAGTAGATTTCAA
GAACGGGAAAACGACGACGACAACAACGACGACGAATCTTATCGGGCTAACAAGGGTGAAAGTTCTCGAACAAATTAG
Protein sequenceShow/hide protein sequence
MKMEDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKSCNKPSRFQ
ERENDDDNNDDESYRANKGESSRTN