; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027988 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027988
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description50S ribosomal protein L18
Genome locationscaffold2:43131830..43133301
RNA-Seq ExpressionSpg027988
SyntenySpg027988
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590442.1 hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sororia]3.4e-5198.25Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGVKLL
        AVVDSVREAG+KLL
Subjt:  AVVDSVREAGVKLL

XP_022961444.1 uncharacterized protein LOC111462025 [Cucurbita moschata]4.5e-5198.25Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGVKLL
        AVVDSVREAG+KLL
Subjt:  AVVDSVREAGVKLL

XP_022968817.1 uncharacterized protein LOC111467940 [Cucurbita maxima]9.9e-5197.37Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEK LRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGVKLL
        AVVDSVREAG+KLL
Subjt:  AVVDSVREAGVKLL

XP_022970166.1 uncharacterized protein LOC111469142 [Cucurbita maxima]4.9e-5094.74Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETAT+ASAASSQEKALR SMESTRDVAAA KIGKLLGERLLLKGIPAVCVHLKREQKYHGK+K
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGVKLL
        AV+DSVREAG+KLL
Subjt:  AVVDSVREAGVKLL

XP_023515963.1 uncharacterized protein LOC111779971 [Cucurbita pepo subsp. pepo]1.3e-5096.49Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPY+LKMHFTNKYVSAQVIHS+TATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGVKLL
        AVVDSVREAG+KLL
Subjt:  AVVDSVREAGVKLL

TrEMBL top hitse value%identityAlignment
A0A5D3DYC1 50S ribosomal protein L185.3e-5094.74Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPP++PPRL QYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGVKLL
        AV+DSVREAG+KLL
Subjt:  AVVDSVREAGVKLL

A0A6J1CWR7 uncharacterized protein LOC1110152865.3e-5095.61Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRP R+TQYLKPYVLKMHFTNKYVSAQV+HSETATVASAASSQEKALR+SMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGVKLL
        AVVDSVREAG+KLL
Subjt:  AVVDSVREAGVKLL

A0A6J1HE21 uncharacterized protein LOC1114620252.2e-5198.25Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGVKLL
        AVVDSVREAG+KLL
Subjt:  AVVDSVREAGVKLL

A0A6J1HZV8 uncharacterized protein LOC1114691422.4e-5094.74Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETAT+ASAASSQEKALR SMESTRDVAAA KIGKLLGERLLLKGIPAVCVHLKREQKYHGK+K
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGVKLL
        AV+DSVREAG+KLL
Subjt:  AVVDSVREAGVKLL

A0A6J1I0R8 uncharacterized protein LOC1114679404.8e-5197.37Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEK LRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGVKLL
        AVVDSVREAG+KLL
Subjt:  AVVDSVREAGVKLL

SwissProt top hitse value%identityAlignment
A7MWH4 50S ribosomal protein L181.5e-0944.57Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGVK
        L +H T ++V AQVI +  + V +AAS+ EKA+R  ++ T +V AA  +GK + ER L KG+ AV       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGVK

A8IAP8 50S ribosomal protein L185.2e-1044.57Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGVK
        L +H T+K++ AQ+I         AASS EK LRSS+++  DV AA  IGKL+ ER   KG+ AV V  +    YHG+VKA+ +  RE G++
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGVK

B6EPU1 50S ribosomal protein L181.5e-0945.65Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGVK
        L +H T ++  AQVI    + V +AAS+ EKA+R  + +T + AAA  IGKL+ ER + KGI  V       Q YHG+V A+ DS REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGVK

B7VLE1 50S ribosomal protein L181.2e-0943.48Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGVK
        L +H T ++V AQVI +  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L KG+ +V       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGVK

P52863 50S ribosomal protein L186.8e-1044.57Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGVK
        L +H T ++V AQVI S  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L KG+  V       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGVK

Arabidopsis top hitse value%identityAlignment
AT3G20230.1 Ribosomal L18p/L5e family protein6.9e-1030.69Show/hide
Query:  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
        R   Y++P++L + F+ K++ A+V+H  T+ V S A++  + +R+++ S  D  A   IGKL+ ER +   + AV    ++ ++  GK+  V+D+++E G
Subjt:  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG

Query:  V
        +
Subjt:  V

AT3G22450.1 Ribosomal L18p/L5e family protein5.2e-0531.25Show/hide
Query:  PYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGVKL
        P+ L ++ + + V A VIH  T+ V + A S  K ++  + S R+VAA A +G +L +R L   I  V    ++  K  GK++ V+ ++ + GV +
Subjt:  PYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGVKL

AT3G45020.1 Ribosomal L18p/L5e family protein2.3e-0531.53Show/hide
Query:  LKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTR--DVAAAAKIGKLLGERLLLKGIP-----AVCVHLKREQKYHG-----KVKAVV
        LK YVL++  + KY++A V+      + + AS+ E  +++S+E  R  +  AAA +G++L  RL ++G+       +   +K+E +  G     KV AV+
Subjt:  LKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTR--DVAAAAKIGKLLGERLLLKGIP-----AVCVHLKREQKYHG-----KVKAVV

Query:  DSVREAGVKLL
        +S+R  GV L+
Subjt:  DSVREAGVKLL

AT5G27820.1 Ribosomal L18p/L5e family protein7.4e-4479.82Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPP VRPPRL  YLKPYVLKMHFTNK+V AQVIHS TATVA +ASSQEKALR +M+ TRDVAAA+KIGK+LGERLL+K IPAV + +K+EQ+YHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGVKLL
        AV+DSVREAGVKLL
Subjt:  AVVDSVREAGVKLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGCAACCTCTCGCCGCCGCCAACCCCTGTCTTTCATCGAGGGAGATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTT
GAAGATGCACTTCACGAACAAGTATGTGAGCGCCCAGGTGATCCACTCCGAAACGGCCACCGTTGCTTCGGCTGCAAGCTCGCAAGAGAAGGCGCTGCGGTCGAGCATGG
AGTCAACGAGGGATGTGGCTGCTGCTGCAAAGATTGGGAAATTGTTGGGAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAA
TATCATGGTAAGGTCAAAGCTGTTGTTGATTCTGTGAGGGAAGCAGGTGTTAAGCTGCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTGCAACCTCTCGCCGCCGCCAACCCCTGTCTTTCATCGAGGGAGATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTT
GAAGATGCACTTCACGAACAAGTATGTGAGCGCCCAGGTGATCCACTCCGAAACGGCCACCGTTGCTTCGGCTGCAAGCTCGCAAGAGAAGGCGCTGCGGTCGAGCATGG
AGTCAACGAGGGATGTGGCTGCTGCTGCAAAGATTGGGAAATTGTTGGGAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAA
TATCATGGTAAGGTCAAAGCTGTTGTTGATTCTGTGAGGGAAGCAGGTGTTAAGCTGCTTTGA
Protein sequenceShow/hide protein sequence
MLQPLAAANPCLSSREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQK
YHGKVKAVVDSVREAGVKLL