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Spg027995 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027995
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold2:46571838..46573778
RNA-Seq ExpressionSpg027995
SyntenySpg027995
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR011320 - Ribonuclease H1, N-terminal
IPR024752 - Myb/SANT-like domain
IPR037056 - Ribonuclease H1, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041444.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-2759.18Show/hide
Query:  EEDVVLVQCLVHLVQIGGWRGDNGTFRPGLYNQIGKMMKERLSVCNIVISPNIESRVKLLKKQYMAIVEMMGPACSGFGWNEERKCIWAEKEIFDAWV
        EE+  LV+CLV LV  GGWR DNGTFRPG  NQ+ +MM  ++  CNI  SPN +SR+KL+K+ + A+ EM GP CSGFGWN+E+KCI AEKE+F+ W+
Subjt:  EEDVVLVQCLVHLVQIGGWRGDNGTFRPGLYNQIGKMMKERLSVCNIVISPNIESRVKLLKKQYMAIVEMMGPACSGFGWNEERKCIWAEKEIFDAWV

KAA0041970.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]7.2e-2961.86Show/hide
Query:  EDVVLVQCLVHLVQIGGWRGDNGTFRPGLYNQIGKMMKERLSVCNIVISPNIESRVKLLKKQYMAIVEMMGPACSGFGWNEERKCIWAEKEIFDAWV
        E+  LV+CL+ LV+ GGWR DNGTF+ G   Q+ K+MKE++   NI ++PN+ESRVK+LKKQY  I +MMGPAC+ FGWNEERKCI AEK +FD WV
Subjt:  EDVVLVQCLVHLVQIGGWRGDNGTFRPGLYNQIGKMMKERLSVCNIVISPNIESRVKLLKKQYMAIVEMMGPACSGFGWNEERKCIWAEKEIFDAWV

KAA0047509.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-2760.82Show/hide
Query:  EEDVVLVQCLVHLVQIGGWRGDNGTFRPGLYNQIGKMMKERLSVCNIVISPNIESRVKLLKKQYMAIVEMMGPACSGFGWNEERKCIWAEKEIFDAW
        EE+V LV+CLV LV  GGWR DNGTFRPG  NQ+ +MM  ++  CNI  S  I+SR+KL+K+ + A+ EM GP CSGFGWN+E+KCI AEKE+FD W
Subjt:  EEDVVLVQCLVHLVQIGGWRGDNGTFRPGLYNQIGKMMKERLSVCNIVISPNIESRVKLLKKQYMAIVEMMGPACSGFGWNEERKCIWAEKEIFDAW

KAA0050106.1 retrotransposon protein [Cucumis melo var. makuwa]3.5e-3166.67Show/hide
Query:  DVVLVQCLVHLVQIGGWRGDNGTFRPGLYNQIGKMMKERLSVCNIVISPNIESRVKLLKKQYMAIVEMMGPACSGFGWNEERKCIWAEKEIFDAWV
        D VLV+CL+ LV+ GGWR DNGTF+ G   Q+ K+MKE++   NI ++PN++SRVK+LKKQY+AI EMMGPACSGFGWNEERKCI AEK +FD WV
Subjt:  DVVLVQCLVHLVQIGGWRGDNGTFRPGLYNQIGKMMKERLSVCNIVISPNIESRVKLLKKQYMAIVEMMGPACSGFGWNEERKCIWAEKEIFDAWV

TYJ99726.1 retrotransposon protein [Cucumis melo var. makuwa]3.0e-2759.79Show/hide
Query:  EEDVVLVQCLVHLVQIGGWRGDNGTFRPGLYNQIGKMMKERLSVCNIVISPNIESRVKLLKKQYMAIVEMMGPACSGFGWNEERKCIWAEKEIFDAW
        EE+  LV+CLV LV  GGWR DNGTFRPG  NQ+ +MM  ++  CNI  S  I+SR+KL+K+ + A+ EM GP CSGFGWN+E+KCI AEKE+FD W
Subjt:  EEDVVLVQCLVHLVQIGGWRGDNGTFRPGLYNQIGKMMKERLSVCNIVISPNIESRVKLLKKQYMAIVEMMGPACSGFGWNEERKCIWAEKEIFDAW

TrEMBL top hitse value%identityAlignment
A0A5A7TDD6 Retrotransposon protein6.6e-2859.18Show/hide
Query:  EEDVVLVQCLVHLVQIGGWRGDNGTFRPGLYNQIGKMMKERLSVCNIVISPNIESRVKLLKKQYMAIVEMMGPACSGFGWNEERKCIWAEKEIFDAWV
        EE+  LV+CLV LV  GGWR DNGTFRPG  NQ+ +MM  ++  CNI  SPN +SR+KL+K+ + A+ EM GP CSGFGWN+E+KCI AEKE+F+ W+
Subjt:  EEDVVLVQCLVHLVQIGGWRGDNGTFRPGLYNQIGKMMKERLSVCNIVISPNIESRVKLLKKQYMAIVEMMGPACSGFGWNEERKCIWAEKEIFDAWV

A0A5A7TF70 Putative nuclease HARBI13.5e-2961.86Show/hide
Query:  EDVVLVQCLVHLVQIGGWRGDNGTFRPGLYNQIGKMMKERLSVCNIVISPNIESRVKLLKKQYMAIVEMMGPACSGFGWNEERKCIWAEKEIFDAWV
        E+  LV+CL+ LV+ GGWR DNGTF+ G   Q+ K+MKE++   NI ++PN+ESRVK+LKKQY  I +MMGPAC+ FGWNEERKCI AEK +FD WV
Subjt:  EDVVLVQCLVHLVQIGGWRGDNGTFRPGLYNQIGKMMKERLSVCNIVISPNIESRVKLLKKQYMAIVEMMGPACSGFGWNEERKCIWAEKEIFDAWV

A0A5A7U216 Retrotransposon protein6.6e-2860.82Show/hide
Query:  EEDVVLVQCLVHLVQIGGWRGDNGTFRPGLYNQIGKMMKERLSVCNIVISPNIESRVKLLKKQYMAIVEMMGPACSGFGWNEERKCIWAEKEIFDAW
        EE+V LV+CLV LV  GGWR DNGTFRPG  NQ+ +MM  ++  CNI  S  I+SR+KL+K+ + A+ EM GP CSGFGWN+E+KCI AEKE+FD W
Subjt:  EEDVVLVQCLVHLVQIGGWRGDNGTFRPGLYNQIGKMMKERLSVCNIVISPNIESRVKLLKKQYMAIVEMMGPACSGFGWNEERKCIWAEKEIFDAW

A0A5A7U7F7 Retrotransposon protein1.7e-3166.67Show/hide
Query:  DVVLVQCLVHLVQIGGWRGDNGTFRPGLYNQIGKMMKERLSVCNIVISPNIESRVKLLKKQYMAIVEMMGPACSGFGWNEERKCIWAEKEIFDAWV
        D VLV+CL+ LV+ GGWR DNGTF+ G   Q+ K+MKE++   NI ++PN++SRVK+LKKQY+AI EMMGPACSGFGWNEERKCI AEK +FD WV
Subjt:  DVVLVQCLVHLVQIGGWRGDNGTFRPGLYNQIGKMMKERLSVCNIVISPNIESRVKLLKKQYMAIVEMMGPACSGFGWNEERKCIWAEKEIFDAWV

A0A5D3BKP9 Retrotransposon protein1.5e-2759.79Show/hide
Query:  EEDVVLVQCLVHLVQIGGWRGDNGTFRPGLYNQIGKMMKERLSVCNIVISPNIESRVKLLKKQYMAIVEMMGPACSGFGWNEERKCIWAEKEIFDAW
        EE+  LV+CLV LV  GGWR DNGTFRPG  NQ+ +MM  ++  CNI  S  I+SR+KL+K+ + A+ EM GP CSGFGWN+E+KCI AEKE+FD W
Subjt:  EEDVVLVQCLVHLVQIGGWRGDNGTFRPGLYNQIGKMMKERLSVCNIVISPNIESRVKLLKKQYMAIVEMMGPACSGFGWNEERKCIWAEKEIFDAW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGTTGTTTACATGACGTGGTACGATTGTTCAAGCCAAGTACACGTATTTAGTGGTGCAATATACCAGTCATATGACACGTTGGATGTCGCGGAAGCAGCATACAC
CGCTTACAACATGGGAGTGGACGATTGTTCGATGGATGCAGGAGAACTTCACCTTCGCCCTACCTGTCGTAATCGTTTCATAAATAGGAATGTAGATAGTACATCCGTTA
GGACATGTAATGGAACGTACCATATGTTCCTCTTCATTATAAGGTGTTCGCTGAATGGAGCAACAACAGATCTGGAGGAGGATGTAGTCCTCGTGCAGTGCCTGGTTCAC
TTGGTACAGATAGGAGGCTGGCGCGGAGATAATGGGACATTTCGCCCAGGATTGTATAACCAGATCGGGAAGATGATGAAAGAAAGGCTGTCGGTCTGCAACATCGTTAT
TAGCCCGAATATTGAGTCCAGGGTCAAGCTGTTGAAAAAACAATACATGGCCATTGTTGAGATGATGGGACCAGCTTGTAGTGGGTTCGGTTGGAACGAGGAGAGGAAGT
GCATTTGGGCGGAGAAGGAGATCTTTGATGCATGGGTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTGTTGTTTACATGACGTGGTACGATTGTTCAAGCCAAGTACACGTATTTAGTGGTGCAATATACCAGTCATATGACACGTTGGATGTCGCGGAAGCAGCATACAC
CGCTTACAACATGGGAGTGGACGATTGTTCGATGGATGCAGGAGAACTTCACCTTCGCCCTACCTGTCGTAATCGTTTCATAAATAGGAATGTAGATAGTACATCCGTTA
GGACATGTAATGGAACGTACCATATGTTCCTCTTCATTATAAGGTGTTCGCTGAATGGAGCAACAACAGATCTGGAGGAGGATGTAGTCCTCGTGCAGTGCCTGGTTCAC
TTGGTACAGATAGGAGGCTGGCGCGGAGATAATGGGACATTTCGCCCAGGATTGTATAACCAGATCGGGAAGATGATGAAAGAAAGGCTGTCGGTCTGCAACATCGTTAT
TAGCCCGAATATTGAGTCCAGGGTCAAGCTGTTGAAAAAACAATACATGGCCATTGTTGAGATGATGGGACCAGCTTGTAGTGGGTTCGGTTGGAACGAGGAGAGGAAGT
GCATTTGGGCGGAGAAGGAGATCTTTGATGCATGGGTCTAG
Protein sequenceShow/hide protein sequence
MLVVYMTWYDCSSQVHVFSGAIYQSYDTLDVAEAAYTAYNMGVDDCSMDAGELHLRPTCRNRFINRNVDSTSVRTCNGTYHMFLFIIRCSLNGATTDLEEDVVLVQCLVH
LVQIGGWRGDNGTFRPGLYNQIGKMMKERLSVCNIVISPNIESRVKLLKKQYMAIVEMMGPACSGFGWNEERKCIWAEKEIFDAWV