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Spg027996 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027996
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold2:41071902..41073464
RNA-Seq ExpressionSpg027996
SyntenySpg027996
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033241.1 hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa]5.8e-1180.95Show/hide
Query:  VHTGYVPLLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS
        V+TGYV LLTL+VL DNDA+VSAGR PLRQR+WECWA PTTS
Subjt:  VHTGYVPLLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]4.6e-0888.89Show/hide
Query:  PLLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS
        PL TLSVLSDNDAVVSAG+APLRQRRWEC  GPTTS
Subjt:  PLLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS
KAA0040296.1 hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa]1.3e-0580Show/hide
Query:  LLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS
        L TLSVL +NDA VSAGR PLRQRRWEC  GPTTS
Subjt:  LLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS
TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]4.6e-0888.89Show/hide
Query:  PLLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS
        PL TLSVLSDNDAVVSAG+APLRQRRWEC  GPTTS
Subjt:  PLLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS
TYK27262.1 hypothetical protein E5676_scaffold244G00290 [Cucumis melo var. makuwa]1.6e-0580Show/hide
Query:  LLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS
        L TLSVL +NDA VSAGR PLRQRRWEC  GPTTS
Subjt:  LLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS
TrEMBL top hitse value%identityAlignment
A0A5A7SUV2 Uncharacterized protein2.8e-1180.95Show/hide
Query:  VHTGYVPLLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS
        V+TGYV LLTL+VL DNDA+VSAGR PLRQR+WECWA PTTS
Subjt:  VHTGYVPLLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS
A0A5A7T7M6 Reverse transcriptase2.2e-0888.89Show/hide
Query:  PLLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS
        PL TLSVLSDNDAVVSAG+APLRQRRWEC  GPTTS
Subjt:  PLLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS
A0A5A7TDY3 Uncharacterized protein6.1e-0680Show/hide
Query:  LLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS
        L TLSVL +NDA VSAGR PLRQRRWEC  GPTTS
Subjt:  LLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS
A0A5D3BTP3 Reverse transcriptase2.2e-0888.89Show/hide
Query:  PLLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS
        PL TLSVLSDNDAVVSAG+APLRQRRWEC  GPTTS
Subjt:  PLLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS
A0A5D3DUS7 Uncharacterized protein7.9e-0680Show/hide
Query:  LLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS
        L TLSVL +NDA VSAGR PLRQRRWEC  GPTTS
Subjt:  LLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTGAAATGGAAAACAGAGCACAAGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCGGAAGC
TCTATTTGGCCAAGAGGAAATAAGTCGAGTCTACAGACCAGGAAACTATCTAAGACTTGTGCACACAGGTTATGTTCCGTTGTTGACGTTGAGTGTACTCAGTGACAACG
ATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTGAAATGGAAAACAGAGCACAAGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCGGAAGC
TCTATTTGGCCAAGAGGAAATAAGTCGAGTCTACAGACCAGGAAACTATCTAAGACTTGTGCACACAGGTTATGTTCCGTTGTTGACGTTGAGTGTACTCAGTGACAACG
ATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAG
Protein sequenceShow/hide protein sequence
MVFEMENRAQDFRAKQEDLWFSLVFRAFWGVQVESEALFGQEEISRVYRPGNYLRLVHTGYVPLLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS