; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027997 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027997
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Genome locationscaffold2:46773403..46779386
RNA-Seq ExpressionSpg027997
SyntenySpg027997
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047518.1 gag-protease polyprotein [Cucumis melo var. makuwa]9.6e-0563.04Show/hide
Query:  ESPSRANERVRPFVQDSESALKGTIFLLSLIRVGANFFLQNYVPSY
        ++PSRANE+V P VQD +S LKGT +LLS   VG NF L  YVPSY
Subjt:  ESPSRANERVRPFVQDSESALKGTIFLLSLIRVGANFFLQNYVPSY

KAA0047869.1 hypothetical protein E6C27_scaffold133G001380 [Cucumis melo var. makuwa]2.0e-1051.09Show/hide
Query:  SPSRANERVRPFVQDSESALKGTIFLLSLIRVGANFFLQNYVPSYLSSLIPKMVGLLSRRYWATLTHANQRIILNKQEFIVSLGLRSSYLGH
        +PSRANE+V P VQD +S LKGT +LLS   VG N  L     +  S L PK    L +R     T+ + RI+ N+Q+FIVS GLRSSYLGH
Subjt:  SPSRANERVRPFVQDSESALKGTIFLLSLIRVGANFFLQNYVPSYLSSLIPKMVGLLSRRYWATLTHANQRIILNKQEFIVSLGLRSSYLGH

KAA0054446.1 hypothetical protein E6C27_scaffold24G002070 [Cucumis melo var. makuwa]1.5e-0546.34Show/hide
Query:  PFVQDSESALKGTIFLLSLIRVGANFFLQNYVPSYLSSLIPKMVGLLSRRYWATLTHANQRIILNKQEFIVSLGLRSSYLGH
        P+VQD +S LKGT +LL+L  VG N  L    P+   SL  K             T+A+ RII  +QEF VS GLR SYLGH
Subjt:  PFVQDSESALKGTIFLLSLIRVGANFFLQNYVPSYLSSLIPKMVGLLSRRYWATLTHANQRIILNKQEFIVSLGLRSSYLGH

TYK16320.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]1.9e-0859.02Show/hide
Query:  ANFFLQNYVPSYLSSLIPKMVGLLSRRYWATLTHANQRIILNKQEFIVSLGLRSSYLGHRM
        + F    YVPSY   L P+M GLL +RY A LT+A+ RI+LN+Q+FIVSLGLRSSYLG  +
Subjt:  ANFFLQNYVPSYLSSLIPKMVGLLSRRYWATLTHANQRIILNKQEFIVSLGLRSSYLGHRM

TrEMBL top hitse value%identityAlignment
A0A5A7TV85 Uncharacterized protein5.2e-0448.44Show/hide
Query:  SPSRANERVRPFVQDSESALKGTIFLLSLIRVGANFFLQNYVPSYLSSLIPKMVGLLSRRYWAT
        +PSRANE+VRPFVQD +S LKGT +LLS   VG N  L +     +S  I  ++ L    YWA+
Subjt:  SPSRANERVRPFVQDSESALKGTIFLLSLIRVGANFFLQNYVPSYLSSLIPKMVGLLSRRYWAT

A0A5A7U348 Uncharacterized protein9.7e-1151.09Show/hide
Query:  SPSRANERVRPFVQDSESALKGTIFLLSLIRVGANFFLQNYVPSYLSSLIPKMVGLLSRRYWATLTHANQRIILNKQEFIVSLGLRSSYLGH
        +PSRANE+V P VQD +S LKGT +LLS   VG N  L     +  S L PK    L +R     T+ + RI+ N+Q+FIVS GLRSSYLGH
Subjt:  SPSRANERVRPFVQDSESALKGTIFLLSLIRVGANFFLQNYVPSYLSSLIPKMVGLLSRRYWATLTHANQRIILNKQEFIVSLGLRSSYLGH

A0A5D3CRT6 Uncharacterized protein7.2e-0646.34Show/hide
Query:  PFVQDSESALKGTIFLLSLIRVGANFFLQNYVPSYLSSLIPKMVGLLSRRYWATLTHANQRIILNKQEFIVSLGLRSSYLGH
        P+VQD +S LKGT +LL+L  VG N  L    P+   SL  K             T+A+ RII  +QEF VS GLR SYLGH
Subjt:  PFVQDSESALKGTIFLLSLIRVGANFFLQNYVPSYLSSLIPKMVGLLSRRYWATLTHANQRIILNKQEFIVSLGLRSSYLGH

A0A5D3CY86 Retrotransposon protein, putative, Ty3-gypsy subclass9.1e-0959.02Show/hide
Query:  ANFFLQNYVPSYLSSLIPKMVGLLSRRYWATLTHANQRIILNKQEFIVSLGLRSSYLGHRM
        + F    YVPSY   L P+M GLL +RY A LT+A+ RI+LN+Q+FIVSLGLRSSYLG  +
Subjt:  ANFFLQNYVPSYLSSLIPKMVGLLSRRYWATLTHANQRIILNKQEFIVSLGLRSSYLGHRM

A0A5D3DRY2 Gag-protease polyprotein4.7e-0563.04Show/hide
Query:  ESPSRANERVRPFVQDSESALKGTIFLLSLIRVGANFFLQNYVPSY
        ++PSRANE+V P VQD +S LKGT +LLS   VG NF L  YVPSY
Subjt:  ESPSRANERVRPFVQDSESALKGTIFLLSLIRVGANFFLQNYVPSY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAGTGGGGACTTCGTATGCAATGAGATTATCCTTCGATTTGCATGAAAAAACAGAGGAATCTGGAAGAACCCAGAAATGCGACCGCATTTCTGGGAAGGCCAATAT
AAAATGCGACCGCATTTCTGGGCAGATGAAGGCAGTTCTGAGTCCGTCGCGGGTTGTTTTGAACGAGTGTTTTGCGCACCTAATCAGCTGTTTTGACTCCGAAACTGACC
GGGTTACCTACCAGCACCATTTTCTTGACTCCTCAACCACTCCCCACACTATAAAAGGCCTCAATTCGAAGAATCTCGTGAACGAAGAGTCAGGATCCAGCTCGGCTTCC
TCGCCCCACTCATCGGAGATCTTCGAGAGAGAACCAGCGGCGTTATCGTCGTTGGTAGATGCGTCGTCGGAGAGAGAGGAGCTCAGGCGAAGGGAGGGGAATCTGAGAGC
TCCGGATTCTTTATGTGAGAGGTTGAAGGAGAGAAATGACGGAATAGAAGTGGTTGGGAGAGGAGAGAAGAGTGACAATTTAGGTCGGAGAGGTGACAGGCGAGGAAGAA
GAAGTCGAAGAGGCGAGGCGAGGAAGACAAAGTCGAAGAGGCGAGGCGAGGAAGACGAAGTCGAAGAGTTCCAACACGCATCACTTGCCCTCTTTATGGCACGAGAGGGG
TTTCTGTTTGATGGTTGGACCTCAAACAGGTTGTTCATTAAAAGAGCGCTGACACTTAAGGATGTAGAGAGTCCTTCTCGGGCCAATGAGAGAGTGAGGCCCTTTGTTCA
AGACTCTGAGTCAGCACTTAAGGGAACAATCTTTCTGCTATCCCTGATACGGGTAGGAGCAAATTTTTTCTTGCAAAACTATGTCCCTAGCTATCTATCCAGTCTTATCC
CAAAAATGGTAGGCTTATTGAGTCGACGATATTGGGCCACTCTCACCCATGCAAATCAAAGGATAATCCTGAACAAACAGGAGTTCATAGTTAGCTTAGGATTAAGATCG
AGTTACCTAGGTCATCGTATGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCGAGTGGGGACTTCGTATGCAATGAGATTATCCTTCGATTTGCATGAAAAAACAGAGGAATCTGGAAGAACCCAGAAATGCGACCGCATTTCTGGGAAGGCCAATAT
AAAATGCGACCGCATTTCTGGGCAGATGAAGGCAGTTCTGAGTCCGTCGCGGGTTGTTTTGAACGAGTGTTTTGCGCACCTAATCAGCTGTTTTGACTCCGAAACTGACC
GGGTTACCTACCAGCACCATTTTCTTGACTCCTCAACCACTCCCCACACTATAAAAGGCCTCAATTCGAAGAATCTCGTGAACGAAGAGTCAGGATCCAGCTCGGCTTCC
TCGCCCCACTCATCGGAGATCTTCGAGAGAGAACCAGCGGCGTTATCGTCGTTGGTAGATGCGTCGTCGGAGAGAGAGGAGCTCAGGCGAAGGGAGGGGAATCTGAGAGC
TCCGGATTCTTTATGTGAGAGGTTGAAGGAGAGAAATGACGGAATAGAAGTGGTTGGGAGAGGAGAGAAGAGTGACAATTTAGGTCGGAGAGGTGACAGGCGAGGAAGAA
GAAGTCGAAGAGGCGAGGCGAGGAAGACAAAGTCGAAGAGGCGAGGCGAGGAAGACGAAGTCGAAGAGTTCCAACACGCATCACTTGCCCTCTTTATGGCACGAGAGGGG
TTTCTGTTTGATGGTTGGACCTCAAACAGGTTGTTCATTAAAAGAGCGCTGACACTTAAGGATGTAGAGAGTCCTTCTCGGGCCAATGAGAGAGTGAGGCCCTTTGTTCA
AGACTCTGAGTCAGCACTTAAGGGAACAATCTTTCTGCTATCCCTGATACGGGTAGGAGCAAATTTTTTCTTGCAAAACTATGTCCCTAGCTATCTATCCAGTCTTATCC
CAAAAATGGTAGGCTTATTGAGTCGACGATATTGGGCCACTCTCACCCATGCAAATCAAAGGATAATCCTGAACAAACAGGAGTTCATAGTTAGCTTAGGATTAAGATCG
AGTTACCTAGGTCATCGTATGAAATAG
Protein sequenceShow/hide protein sequence
MRVGTSYAMRLSFDLHEKTEESGRTQKCDRISGKANIKCDRISGQMKAVLSPSRVVLNECFAHLISCFDSETDRVTYQHHFLDSSTTPHTIKGLNSKNLVNEESGSSSAS
SPHSSEIFEREPAALSSLVDASSEREELRRREGNLRAPDSLCERLKERNDGIEVVGRGEKSDNLGRRGDRRGRRSRRGEARKTKSKRRGEEDEVEEFQHASLALFMAREG
FLFDGWTSNRLFIKRALTLKDVESPSRANERVRPFVQDSESALKGTIFLLSLIRVGANFFLQNYVPSYLSSLIPKMVGLLSRRYWATLTHANQRIILNKQEFIVSLGLRS
SYLGHRMK