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Spg028014 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028014
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold2:43024566..43025021
RNA-Seq ExpressionSpg028014
SyntenySpg028014
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAS77245.1 Os02g0175302 [Oryza sativa Japonica Group]8.1e-0430.43Show/hide
Query:  HLKTMEDSLAGETMAIREG-LRALSSDSLAVMVESDALQVIRLLTGKEDDETELKFFIGEVESLKVERHVDGFYHVLKRHNQMAHYLARKACLSGISACW
        +++    +L  E MA REG L AL    L +++E+D  +++ LL  KE   +EL F + EV  L +   V     V +  N+++H LA K  +  ++  W
Subjt:  HLKTMEDSLAGETMAIREG-LRALSSDSLAVMVESDALQVIRLLTGKEDDETELKFFIGEVESLKVERHVDGFYHVLKRHNQMAHYLARKACLSGISACW

Query:  VHSFPNWLLDLNFVD
          +  N +  L  VD
Subjt:  VHSFPNWLLDLNFVD

EAZ03196.1 hypothetical protein OsI_25347 [Oryza sativa Indica Group]7.3e-0530.77Show/hide
Query:  SLAGETMAIREGLR-ALSSDSLAVMVESDALQVIRLLTGKEDDETELKFFIGEVESLKVERHVDGFYHVLKRHNQMAHYLARKACLSGISACWVHSFPNW
        +L  E +A R+GL   L    L +++ESD LQ I+L+  KE++ ++L F I E++ L           + +  N ++H LA K C   ++A W+    N+
Subjt:  SLAGETMAIREGLR-ALSSDSLAVMVESDALQVIRLLTGKEDDETELKFFIGEVESLKVERHVDGFYHVLKRHNQMAHYLARKACLSGISACWVHSFPNW

Query:  LLDL
        +  L
Subjt:  LLDL

EEE56417.1 hypothetical protein OsJ_05582 [Oryza sativa Japonica Group]8.1e-0430.43Show/hide
Query:  HLKTMEDSLAGETMAIREG-LRALSSDSLAVMVESDALQVIRLLTGKEDDETELKFFIGEVESLKVERHVDGFYHVLKRHNQMAHYLARKACLSGISACW
        +++    +L  E MA REG L AL    L +++E+D  +++ LL  KE   +EL F + EV  L +   V     V +  N+++H LA K  +  ++  W
Subjt:  HLKTMEDSLAGETMAIREG-LRALSSDSLAVMVESDALQVIRLLTGKEDDETELKFFIGEVESLKVERHVDGFYHVLKRHNQMAHYLARKACLSGISACW

Query:  VHSFPNWLLDLNFVD
          +  N +  L  VD
Subjt:  VHSFPNWLLDLNFVD

PQQ17701.1 hypothetical protein Pyn_14707 [Prunus yedoensis var. nudiflora]1.3e-0431.86Show/hide
Query:  SLHLKTMEDSLAGETMAIREG-LRALSSDSLAVMVESDALQVIRLLTGKEDDETELKFFIGEVESLKVERHVDGFYHVLKRHNQMAHYLARKACLSGISA
        +LH+  +  +L  E MA REG + A+  D   V+ ESD+LQ++  +     D + +   + + ++L  +   DGF H+ +  N  AH LAR A   G  A
Subjt:  SLHLKTMEDSLAGETMAIREG-LRALSSDSLAVMVESDALQVIRLLTGKEDDETELKFFIGEVESLKVERHVDGFYHVLKRHNQMAHYLARKACLSGISA

Query:  CWVHSFPNWLLDL
         W    P+ L+D+
Subjt:  CWVHSFPNWLLDL

SPT18706.1 unnamed protein product [Triticum aestivum]2.5e-0533.64Show/hide
Query:  HLKTMEDSLAGETMAIREGLR-ALSSDSLAVMVESDALQVIRLLTGKEDDETELKFFIGEVESLKVERHVDGFYHVLKRHNQMAHYLARKACLSGISACW
        HL + +D L  E +AIREGL  AL   SL + +ESD+L+ + ++  +  + ++  FFI E++    ER      H+ +  N  +H LA      G  A W
Subjt:  HLKTMEDSLAGETMAIREGLR-ALSSDSLAVMVESDALQVIRLLTGKEDDETELKFFIGEVESLKVERHVDGFYHVLKRHNQMAHYLARKACLSGISACW

Query:  VHSFPNWLLD
        + S P+ +LD
Subjt:  VHSFPNWLLD

TrEMBL top hitse value%identityAlignment
A0A0P0VFG5 Os02g0175302 protein3.9e-0430.43Show/hide
Query:  HLKTMEDSLAGETMAIREG-LRALSSDSLAVMVESDALQVIRLLTGKEDDETELKFFIGEVESLKVERHVDGFYHVLKRHNQMAHYLARKACLSGISACW
        +++    +L  E MA REG L AL    L +++E+D  +++ LL  KE   +EL F + EV  L +   V     V +  N+++H LA K  +  ++  W
Subjt:  HLKTMEDSLAGETMAIREG-LRALSSDSLAVMVESDALQVIRLLTGKEDDETELKFFIGEVESLKVERHVDGFYHVLKRHNQMAHYLARKACLSGISACW

Query:  VHSFPNWLLDLNFVD
          +  N +  L  VD
Subjt:  VHSFPNWLLDLNFVD

A0A314ZLL7 RNase H domain-containing protein6.1e-0531.86Show/hide
Query:  SLHLKTMEDSLAGETMAIREG-LRALSSDSLAVMVESDALQVIRLLTGKEDDETELKFFIGEVESLKVERHVDGFYHVLKRHNQMAHYLARKACLSGISA
        +LH+  +  +L  E MA REG + A+  D   V+ ESD+LQ++  +     D + +   + + ++L  +   DGF H+ +  N  AH LAR A   G  A
Subjt:  SLHLKTMEDSLAGETMAIREG-LRALSSDSLAVMVESDALQVIRLLTGKEDDETELKFFIGEVESLKVERHVDGFYHVLKRHNQMAHYLARKACLSGISA

Query:  CWVHSFPNWLLDL
         W    P+ L+D+
Subjt:  CWVHSFPNWLLDL

A0A7H4LJB8 Genome assembly, chromosome: II1.2e-0533.64Show/hide
Query:  HLKTMEDSLAGETMAIREGLR-ALSSDSLAVMVESDALQVIRLLTGKEDDETELKFFIGEVESLKVERHVDGFYHVLKRHNQMAHYLARKACLSGISACW
        HL + +D L  E +AIREGL  AL   SL + +ESD+L+ + ++  +  + ++  FFI E++    ER      H+ +  N  +H LA      G  A W
Subjt:  HLKTMEDSLAGETMAIREGLR-ALSSDSLAVMVESDALQVIRLLTGKEDDETELKFFIGEVESLKVERHVDGFYHVLKRHNQMAHYLARKACLSGISACW

Query:  VHSFPNWLLD
        + S P+ +LD
Subjt:  VHSFPNWLLD

A2YJD5 Reverse transcriptase domain-containing protein3.6e-0530.77Show/hide
Query:  SLAGETMAIREGLR-ALSSDSLAVMVESDALQVIRLLTGKEDDETELKFFIGEVESLKVERHVDGFYHVLKRHNQMAHYLARKACLSGISACWVHSFPNW
        +L  E +A R+GL   L    L +++ESD LQ I+L+  KE++ ++L F I E++ L           + +  N ++H LA K C   ++A W+    N+
Subjt:  SLAGETMAIREGLR-ALSSDSLAVMVESDALQVIRLLTGKEDDETELKFFIGEVESLKVERHVDGFYHVLKRHNQMAHYLARKACLSGISACWVHSFPNW

Query:  LLDL
        +  L
Subjt:  LLDL

B9F3B9 RNase H domain-containing protein3.9e-0430.43Show/hide
Query:  HLKTMEDSLAGETMAIREG-LRALSSDSLAVMVESDALQVIRLLTGKEDDETELKFFIGEVESLKVERHVDGFYHVLKRHNQMAHYLARKACLSGISACW
        +++    +L  E MA REG L AL    L +++E+D  +++ LL  KE   +EL F + EV  L +   V     V +  N+++H LA K  +  ++  W
Subjt:  HLKTMEDSLAGETMAIREG-LRALSSDSLAVMVESDALQVIRLLTGKEDDETELKFFIGEVESLKVERHVDGFYHVLKRHNQMAHYLARKACLSGISACW

Query:  VHSFPNWLLDLNFVD
          +  N +  L  VD
Subjt:  VHSFPNWLLDLNFVD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTGTTCGGCACTGGAATGGTACCCCCCTTTTCGCCGGATTTCGTTGCATCTCAAGACAATGGAGGATTCCTTGGCTGGAGAGACTATGGCGATTCGAGAAGGCCT
TCGTGCGCTGTCGTCGGACTCTCTTGCGGTTATGGTGGAGAGTGATGCCCTTCAAGTTATCAGACTGCTAACCGGTAAAGAAGACGATGAAACTGAGTTGAAGTTCTTCA
TTGGGGAAGTAGAATCCCTAAAAGTGGAAAGGCATGTGGATGGTTTCTATCATGTTTTGAAGAGGCACAATCAAATGGCTCATTATTTGGCTAGAAAGGCATGTCTGAGT
GGGATTTCTGCATGTTGGGTCCATTCATTTCCTAATTGGCTACTTGATTTAAATTTTGTTGACATTGGAGGTTATGATACCACAAGTGGGGGATCCTGTCCCACTGGCGG
TATCCCTTTGGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTGTTCGGCACTGGAATGGTACCCCCCTTTTCGCCGGATTTCGTTGCATCTCAAGACAATGGAGGATTCCTTGGCTGGAGAGACTATGGCGATTCGAGAAGGCCT
TCGTGCGCTGTCGTCGGACTCTCTTGCGGTTATGGTGGAGAGTGATGCCCTTCAAGTTATCAGACTGCTAACCGGTAAAGAAGACGATGAAACTGAGTTGAAGTTCTTCA
TTGGGGAAGTAGAATCCCTAAAAGTGGAAAGGCATGTGGATGGTTTCTATCATGTTTTGAAGAGGCACAATCAAATGGCTCATTATTTGGCTAGAAAGGCATGTCTGAGT
GGGATTTCTGCATGTTGGGTCCATTCATTTCCTAATTGGCTACTTGATTTAAATTTTGTTGACATTGGAGGTTATGATACCACAAGTGGGGGATCCTGTCCCACTGGCGG
TATCCCTTTGGCTTAG
Protein sequenceShow/hide protein sequence
MDCSALEWYPPFRRISLHLKTMEDSLAGETMAIREGLRALSSDSLAVMVESDALQVIRLLTGKEDDETELKFFIGEVESLKVERHVDGFYHVLKRHNQMAHYLARKACLS
GISACWVHSFPNWLLDLNFVDIGGYDTTSGGSCPTGGIPLA