; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028020 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028020
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold2:46905540..46912109
RNA-Seq ExpressionSpg028020
SyntenySpg028020
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.3e-2559.4Show/hide
Query:  FVRGDRDGDVRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVER
        F  G  +G  RPRG+R+SLQTGELDKT                 VEIELPVPDTLPTSAESS S+SS                YF NQVMSGLH V    
Subjt:  FVRGDRDGDVRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVER

Query:  FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        FNVSVGST IVRGD+VCWLHAVF AK AGGPGG
Subjt:  FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-2359.2Show/hide
Query:  DVRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGST
        DV  RG+RSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SS                YF NQVMS LH V    F+V VGST
Subjt:  DVRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGST

Query:  GIVRGDDVCWLHAVFRAKLAGGPGG
        GIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  GIVRGDDVCWLHAVFRAKLAGGPGG

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.0e-2668.22Show/hide
Query:  RPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAK
        +PRG++ SLQTGELDKT                 VEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V    FNVSVGSTGIVRGDDVC LH VFRAK
Subjt:  RPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAK

Query:  LAGGPGG
         AGGPGG
Subjt:  LAGGPGG

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.6e-2361.67Show/hide
Query:  PRGSRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRG
        PRG+R SLQTGELDKTV                IELPVPDTLPTSAESS S+SS                 F NQVMS LH V    FNVSVGSTGIVRG
Subjt:  PRGSRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRG

Query:  DDVCWLHAVFRAKLAGGPGG
        DDVCWLHAVFRAK  GGPGG
Subjt:  DDVCWLHAVFRAKLAGGPGG

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.6e-2359.2Show/hide
Query:  DVRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGST
        DV  RG+RSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SS                YF NQVMS LH V    F+V VGST
Subjt:  DVRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGST

Query:  GIVRGDDVCWLHAVFRAKLAGGPGG
        GIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  GIVRGDDVCWLHAVFRAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein6.5e-2659.4Show/hide
Query:  FVRGDRDGDVRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVER
        F  G  +G  RPRG+R+SLQTGELDKT                 VEIELPVPDTLPTSAESS S+SS                YF NQVMSGLH V    
Subjt:  FVRGDRDGDVRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVER

Query:  FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        FNVSVGST IVRGD+VCWLHAVF AK AGGPGG
Subjt:  FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5A7V9N3 Reverse transcriptase7.9e-2459.2Show/hide
Query:  DVRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGST
        DV  RG+RSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SS                YF NQVMS LH V    F+V VGST
Subjt:  DVRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGST

Query:  GIVRGDDVCWLHAVFRAKLAGGPGG
        GIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  GIVRGDDVCWLHAVFRAKLAGGPGG

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein2.9e-2668.22Show/hide
Query:  RPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAK
        +PRG++ SLQTGELDKT                 VEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V    FNVSVGSTGIVRGDDVC LH VFRAK
Subjt:  RPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAK

Query:  LAGGPGG
         AGGPGG
Subjt:  LAGGPGG

A0A5D3CJX3 CCHC-type domain-containing protein7.9e-2461.67Show/hide
Query:  PRGSRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRG
        PRG+R SLQTGELDKTV                IELPVPDTLPTSAESS S+SS                 F NQVMS LH V    FNVSVGSTGIVRG
Subjt:  PRGSRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRG

Query:  DDVCWLHAVFRAKLAGGPGG
        DDVCWLHAVFRAK  GGPGG
Subjt:  DDVCWLHAVFRAKLAGGPGG

A0A5D3DSY7 Putative Retrotransposon protein7.9e-2459.2Show/hide
Query:  DVRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGST
        DV  RG+RSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SS                YF NQVMS LH V    F+V VGST
Subjt:  DVRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGST

Query:  GIVRGDDVCWLHAVFRAKLAGGPGG
        GIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  GIVRGDDVCWLHAVFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCAAGACCGAAGGGGTCGGGCTTTTGGCCTGACCCCCTGCTCGGCCCGCTTGCGCGGGTCGAGTTCCTCCGACTCCGTTCGATCCCTATTGCCTCTGACCGCCCC
AGTTCCGCCTGCACCACACCCGGTGTGCAAGTTTATCATTTGCAGGCCACGTCTTCCCCCTCATTTGCAGGCCACATCTTCCCCCTCATCTACAAATTTACCGTTGGTGG
CACGTGAAGGTCAGGTGCACGACTATGCAGGAGGCAATGCCAAACTCGCTACCGCAGCGTCGTCGAGTGTGGCGGCTCGATCTTCGACAGTGACTGATCGAGGAAAAAAG
GAGGCGATTAGTTGTTGCGAGCGACAATGGCAGCGCTGGCGATCGGAGAACAAGAGAGGCGGTGACAGGGCTAAAAGACACTCAACCCAAATGGAAGGACTTGGAGCACA
AGAGATTTGGTCGCTGCTAGCAACAGATGAGGAGATGAATATGCAGTTGTTCCAACCATTTGTTGATGGAGAGGGAAGTTTAAGGCGTGAATTCTGGAACCAGCTCGCTA
TGGAGCATCCTGCCCACACTATAACCGAGTTGTCGTTTACAAGGAGTACTGCCTCATTGATTGATATTAAACACATTAGAGAGGCCTTGGAGCTAATGATGGGGAGGCTG
AAGCAAGGGGAGAAAAGTGGATTTGAAGGCTTTGTTCGTGGAGATCGTGACGGGGACGTTCGGCCAAGAGGAAGTAGGTCAAGTCTACAAACCGGGGAACTAGATAAGAC
TGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGT
ATGTTGAAAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG
GATAGGGATATCGGGTTCATTGCATGTGGGAGAATCATGTATGCTCGGGAGAGATATGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCCAAGACCGAAGGGGTCGGGCTTTTGGCCTGACCCCCTGCTCGGCCCGCTTGCGCGGGTCGAGTTCCTCCGACTCCGTTCGATCCCTATTGCCTCTGACCGCCCC
AGTTCCGCCTGCACCACACCCGGTGTGCAAGTTTATCATTTGCAGGCCACGTCTTCCCCCTCATTTGCAGGCCACATCTTCCCCCTCATCTACAAATTTACCGTTGGTGG
CACGTGAAGGTCAGGTGCACGACTATGCAGGAGGCAATGCCAAACTCGCTACCGCAGCGTCGTCGAGTGTGGCGGCTCGATCTTCGACAGTGACTGATCGAGGAAAAAAG
GAGGCGATTAGTTGTTGCGAGCGACAATGGCAGCGCTGGCGATCGGAGAACAAGAGAGGCGGTGACAGGGCTAAAAGACACTCAACCCAAATGGAAGGACTTGGAGCACA
AGAGATTTGGTCGCTGCTAGCAACAGATGAGGAGATGAATATGCAGTTGTTCCAACCATTTGTTGATGGAGAGGGAAGTTTAAGGCGTGAATTCTGGAACCAGCTCGCTA
TGGAGCATCCTGCCCACACTATAACCGAGTTGTCGTTTACAAGGAGTACTGCCTCATTGATTGATATTAAACACATTAGAGAGGCCTTGGAGCTAATGATGGGGAGGCTG
AAGCAAGGGGAGAAAAGTGGATTTGAAGGCTTTGTTCGTGGAGATCGTGACGGGGACGTTCGGCCAAGAGGAAGTAGGTCAAGTCTACAAACCGGGGAACTAGATAAGAC
TGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGT
ATGTTGAAAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG
GATAGGGATATCGGGTTCATTGCATGTGGGAGAATCATGTATGCTCGGGAGAGATATGTGTGA
Protein sequenceShow/hide protein sequence
MGQDRRGRAFGLTPCSARLRGSSSSDSVRSLLPLTAPVPPAPHPVCKFIICRPRLPPHLQATSSPSSTNLPLVAREGQVHDYAGGNAKLATAASSSVAARSSTVTDRGKK
EAISCCERQWQRWRSENKRGGDRAKRHSTQMEGLGAQEIWSLLATDEEMNMQLFQPFVDGEGSLRREFWNQLAMEHPAHTITELSFTRSTASLIDIKHIREALELMMGRL
KQGEKSGFEGFVRGDRDGDVRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
DRDIGFIACGRIMYARERYV