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Spg028021 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028021
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold2:46328593..46332638
RNA-Seq ExpressionSpg028021
SyntenySpg028021
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-0851.28Show/hide
Query:  MVEIELPVPDTLPTSADSSRSSSSSTLQ---EGQRVS-------LEEDDVRWLHAIFRTELAGGPGGGVTVRRLCEYR
        +VEIELP+PDTLPTSA+SS S+SS+ L+   E   V        +  DDV WLHA+FR +  GGPGGGV   R    R
Subjt:  MVEIELPVPDTLPTSADSSRSSSSSTLQ---EGQRVS-------LEEDDVRWLHAIFRTELAGGPGGGVTVRRLCEYR

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]4.8e-0963.33Show/hide
Query:  MVEIELPVPDTLPTSADSSRSSSSSTLQEGQRVSLEEDDVRWLHAIFRTELAGGPGGGVT
        +VEIELPVPDTLPTSA+S  S+S ST        +  DDV WLHA+FR + AGGPGGGVT
Subjt:  MVEIELPVPDTLPTSADSSRSSSSSTLQEGQRVSLEEDDVRWLHAIFRTELAGGPGGGVT

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-0959.42Show/hide
Query:  MVEIELPVPDTLPTSADSSRSSSSSTLQ---EGQRVSL-------EEDDVRWLHAIFRTELAGGPGGGV
        +VEIELPVPDTLPTSA+SS S+SS+ L+   E   V +        EDDV WLHA+FR + AGGPGGGV
Subjt:  MVEIELPVPDTLPTSADSSRSSSSSTLQ---EGQRVSL-------EEDDVRWLHAIFRTELAGGPGGGV

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-0851.28Show/hide
Query:  MVEIELPVPDTLPTSADSSRSSSSSTLQ---EGQRVS-------LEEDDVRWLHAIFRTELAGGPGGGVTVRRLCEYR
        +VEIELP+PDTLPTSA+SS S+SS+ L+   E   V        +  DDV WLHA+FR +  GGPGGGV   R    R
Subjt:  MVEIELPVPDTLPTSADSSRSSSSSTLQ---EGQRVS-------LEEDDVRWLHAIFRTELAGGPGGGVTVRRLCEYR

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-0959.42Show/hide
Query:  MVEIELPVPDTLPTSADSSRSSSSSTLQ---EGQRVSL-------EEDDVRWLHAIFRTELAGGPGGGV
        +VEIELPVPDTLPTSA+SS S+SS+ L+   E   V +        EDDV WLHA+FR + AGGPGGGV
Subjt:  MVEIELPVPDTLPTSADSSRSSSSSTLQ---EGQRVSL-------EEDDVRWLHAIFRTELAGGPGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase5.2e-0951.28Show/hide
Query:  MVEIELPVPDTLPTSADSSRSSSSSTLQ---EGQRVS-------LEEDDVRWLHAIFRTELAGGPGGGVTVRRLCEYR
        +VEIELP+PDTLPTSA+SS S+SS+ L+   E   V        +  DDV WLHA+FR +  GGPGGGV   R    R
Subjt:  MVEIELPVPDTLPTSADSSRSSSSSTLQ---EGQRVS-------LEEDDVRWLHAIFRTELAGGPGGGVTVRRLCEYR

A0A5A7VMG9 Reverse transcriptase8.0e-1059.42Show/hide
Query:  MVEIELPVPDTLPTSADSSRSSSSSTLQ---EGQRVSL-------EEDDVRWLHAIFRTELAGGPGGGV
        +VEIELPVPDTLPTSA+SS S+SS+ L+   E   V +        EDDV WLHA+FR + AGGPGGGV
Subjt:  MVEIELPVPDTLPTSADSSRSSSSSTLQ---EGQRVSL-------EEDDVRWLHAIFRTELAGGPGGGV

A0A5D3BAD1 Retrotrans_gag domain-containing protein2.3e-0963.33Show/hide
Query:  MVEIELPVPDTLPTSADSSRSSSSSTLQEGQRVSLEEDDVRWLHAIFRTELAGGPGGGVT
        +VEIELPVPDTLPTSA+S  S+S ST        +  DDV WLHA+FR + AGGPGGGVT
Subjt:  MVEIELPVPDTLPTSADSSRSSSSSTLQEGQRVSLEEDDVRWLHAIFRTELAGGPGGGVT

A0A5D3D150 Reverse transcriptase5.2e-0951.28Show/hide
Query:  MVEIELPVPDTLPTSADSSRSSSSSTLQ---EGQRVS-------LEEDDVRWLHAIFRTELAGGPGGGVTVRRLCEYR
        +VEIELP+PDTLPTSA+SS S+SS+ L+   E   V        +  DDV WLHA+FR +  GGPGGGV   R    R
Subjt:  MVEIELPVPDTLPTSADSSRSSSSSTLQ---EGQRVS-------LEEDDVRWLHAIFRTELAGGPGGGVTVRRLCEYR

A0A5D3DX39 Reverse transcriptase8.0e-1059.42Show/hide
Query:  MVEIELPVPDTLPTSADSSRSSSSSTLQ---EGQRVSL-------EEDDVRWLHAIFRTELAGGPGGGV
        +VEIELPVPDTLPTSA+SS S+SS+ L+   E   V +        EDDV WLHA+FR + AGGPGGGV
Subjt:  MVEIELPVPDTLPTSADSSRSSSSSTLQ---EGQRVSL-------EEDDVRWLHAIFRTELAGGPGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACTTCATGGACGCTTTGGATCAATACGTCTGTATCAAATACAAAGCGGGTCGTATCACGTAGTGTTACCAGGATAAGTTTGAGCTACCCAGAAGGAACTAAGAG
AGCACAGGATTTTCGTGCAGATCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCAAGCTTTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGATATGGTAGAGATCG
AGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGACAGTTCCAGATCAAGCTCCAGTTCAACGTTACAGGAGGGTCAACGAGTATCGTTAGAGGAGGACGATGTTCGT
TGGCTTCACGCCATCTTCCGGACTGAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGTTAGAAGGCTATGCGAGTACCGTTATGCACATGTCTATGACTCGAATCCGAC
ATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTACTTCATGGACGCTTTGGATCAATACGTCTGTATCAAATACAAAGCGGGTCGTATCACGTAGTGTTACCAGGATAAGTTTGAGCTACCCAGAAGGAACTAAGAG
AGCACAGGATTTTCGTGCAGATCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCAAGCTTTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGATATGGTAGAGATCG
AGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGACAGTTCCAGATCAAGCTCCAGTTCAACGTTACAGGAGGGTCAACGAGTATCGTTAGAGGAGGACGATGTTCGT
TGGCTTCACGCCATCTTCCGGACTGAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGTTAGAAGGCTATGCGAGTACCGTTATGCACATGTCTATGACTCGAATCCGAC
ATAG
Protein sequenceShow/hide protein sequence
MSTSWTLWINTSVSNTKRVVSRSVTRISLSYPEGTKRAQDFRADQEDLWFSLVFQAFWGVQVESEALFDMVEIELPVPDTLPTSADSSRSSSSSTLQEGQRVSLEEDDVR
WLHAIFRTELAGGPGGGVTVRRLCEYRYAHVYDSNPT