; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028035 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028035
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description50S ribosomal protein L18
Genome locationscaffold2:43341139..43341955
RNA-Seq ExpressionSpg028035
SyntenySpg028035
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590442.1 hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sororia]4.0e-4995.61Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGWVIL
        AVVDSVREAG  +L
Subjt:  AVVDSVREAGWVIL

XP_008462699.1 PREDICTED: 50S ribosomal protein L18 [Cucumis melo]2.0e-4893.86Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPP++PPRL QYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGWVIL
        AV+DSVREAG  +L
Subjt:  AVVDSVREAGWVIL

XP_022961444.1 uncharacterized protein LOC111462025 [Cucurbita moschata]5.2e-4995.61Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGWVIL
        AVVDSVREAG  +L
Subjt:  AVVDSVREAGWVIL

XP_022968817.1 uncharacterized protein LOC111467940 [Cucurbita maxima]1.2e-4894.74Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEK LRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGWVIL
        AVVDSVREAG  +L
Subjt:  AVVDSVREAGWVIL

XP_023515963.1 uncharacterized protein LOC111779971 [Cucurbita pepo subsp. pepo]1.5e-4893.86Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPY+LKMHFTNK+VSAQVIHS+TATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGWVIL
        AVVDSVREAG  +L
Subjt:  AVVDSVREAGWVIL

TrEMBL top hitse value%identityAlignment
A0A1S3CHJ0 50S ribosomal protein L189.6e-4993.86Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPP++PPRL QYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGWVIL
        AV+DSVREAG  +L
Subjt:  AVVDSVREAGWVIL

A0A5D3DYC1 50S ribosomal protein L189.6e-4993.86Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPP++PPRL QYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGWVIL
        AV+DSVREAG  +L
Subjt:  AVVDSVREAGWVIL

A0A6J1HE21 uncharacterized protein LOC1114620252.5e-4995.61Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGWVIL
        AVVDSVREAG  +L
Subjt:  AVVDSVREAGWVIL

A0A6J1HZV8 uncharacterized protein LOC1114691422.8e-4892.11Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNK+VSAQVIHSETAT+ASAASSQEKALR SMESTRDVAAA KIGKLLGERLLLKGIPAVCVHLKREQKYHGK+K
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGWVIL
        AV+DSVREAG  +L
Subjt:  AVVDSVREAGWVIL

A0A6J1I0R8 uncharacterized protein LOC1114679405.6e-4994.74Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEK LRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGWVIL
        AVVDSVREAG  +L
Subjt:  AVVDSVREAGWVIL

SwissProt top hitse value%identityAlignment
A0KRP0 50S ribosomal protein L185.5e-0940.38Show/hide
Query:  VRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSV
        +R  +  Q L    L +H T + + AQVI+ E A V +AAS+ EKA++  ++ST +V AA  +GK + ER + KG+  V    +   KYHG+V A+ D+ 
Subjt:  VRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSV

Query:  REAG
        REAG
Subjt:  REAG

A4YBW7 50S ribosomal protein L185.5e-0940.38Show/hide
Query:  VRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSV
        +R  +  Q L    L +H T + + AQVI+ E A V +AAS+ EKA++  ++ST +V AA  +GK + ER + KG+ +V    +   KYHG+V A+ D+ 
Subjt:  VRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSV

Query:  REAG
        REAG
Subjt:  REAG

A8IAP8 50S ribosomal protein L181.1e-0945.56Show/hide
Query:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
        L +H T+K + AQ+I         AASS EK LRSS+++  DV AA  IGKL+ ER   KG+ AV V  +    YHG+VKA+ +  RE G
Subjt:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG

P52863 50S ribosomal protein L184.2e-0944.44Show/hide
Query:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
        L +H T + V AQVI S  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L KG+  V       Q YHG+V A+ +S REAG
Subjt:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG

Q0HNS1 50S ribosomal protein L185.5e-0940.38Show/hide
Query:  VRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSV
        +R  +  Q L    L +H T + + AQVI+ E A V +AAS+ EKA++  ++ST +V AA  +GK + ER + KG+ +V    +   KYHG+V A+ D+ 
Subjt:  VRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSV

Query:  REAG
        REAG
Subjt:  REAG

Arabidopsis top hitse value%identityAlignment
AT3G20230.1 Ribosomal L18p/L5e family protein3.0e-1030.77Show/hide
Query:  RLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
        R   Y++P++L + F+ KF+ A+V+H  T+ V S A++  + +R+++ S  D  A   IGKL+ ER +   + AV    ++ ++  GK+  V+D+++E G
Subjt:  RLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG

Query:  WVIL
         + +
Subjt:  WVIL

AT3G22450.1 Ribosomal L18p/L5e family protein1.1e-0431.18Show/hide
Query:  PYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
        P+ L ++ + + V A VIH  T+ V + A S  K ++  + S R+VAA A +G +L +R L   I  V    ++  K  GK++ V+ ++ + G
Subjt:  PYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG

AT3G45020.1 Ribosomal L18p/L5e family protein1.9e-0428.57Show/hide
Query:  LKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTR--DVAAAAKIGKLLGERLLLKGIP-----AVCVHLKREQKYHG-----KVKAVV
        LK YVL++  + K+++A V+      + + AS+ E  +++S+E  R  +  AAA +G++L  RL ++G+       +   +K+E +  G     KV AV+
Subjt:  LKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTR--DVAAAAKIGKLLGERLLLKGIP-----AVCVHLKREQKYHG-----KVKAVV

Query:  DSVREAGWVILM
        +S+R  G  +++
Subjt:  DSVREAGWVILM

AT5G27820.1 Ribosomal L18p/L5e family protein1.7e-4278.07Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPP VRPPRL  YLKPYVLKMHFTNKFV AQVIHS TATVA +ASSQEKALR +M+ TRDVAAA+KIGK+LGERLL+K IPAV + +K+EQ+YHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGWVIL
        AV+DSVREAG  +L
Subjt:  AVVDSVREAGWVIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTTTGTGAGCGCCCAGGTGATCCACTC
CGAAACGGCCACCGTTGCTTCGGCTGCAAGCTCGCAAGAGAAGGCGTTGCGGTCGAGCATGGAGTCAACGAGGGATGTGGCTGCTGCTGCAAAGATTGGGAAATTGTTGG
GAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTGTTGATTCTGTGAGGGAAGCAGGA
TGGGTGATTTTGATGTGGTTTGGGAGAGTGATGGGTTCCGATGAAACACTTCTTTGCCAGCACTTTTGGAAAATAAACACTGAGAGGGTGTTTATGGCACTGAGTAGAGT
TATTAAGTTTAGAGTTGTTTCGTTGATAGAGTTATTTAGGCCGTGGAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTTTGTGAGCGCCCAGGTGATCCACTC
CGAAACGGCCACCGTTGCTTCGGCTGCAAGCTCGCAAGAGAAGGCGTTGCGGTCGAGCATGGAGTCAACGAGGGATGTGGCTGCTGCTGCAAAGATTGGGAAATTGTTGG
GAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTGTTGATTCTGTGAGGGAAGCAGGA
TGGGTGATTTTGATGTGGTTTGGGAGAGTGATGGGTTCCGATGAAACACTTCTTTGCCAGCACTTTTGGAAAATAAACACTGAGAGGGTGTTTATGGCACTGAGTAGAGT
TATTAAGTTTAGAGTTGTTTCGTTGATAGAGTTATTTAGGCCGTGGAGTTAA
Protein sequenceShow/hide protein sequence
MVIPPPVRPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
WVILMWFGRVMGSDETLLCQHFWKINTERVFMALSRVIKFRVVSLIELFRPWS