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Spg028070 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028070
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold2:43899883..43901428
RNA-Seq ExpressionSpg028070
SyntenySpg028070
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.0e-1443.8Show/hide
Query:  RPKGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRTSSKCFISMISMFIR------------------FNVQEGKRVSLEED
        RP+GNR+SLQTGELDKT                 VEIELPVPDTLPTSAES  ++S  ++ +   F+                   FNV  G    +  D
Subjt:  RPKGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRTSSKCFISMISMFIR------------------FNVQEGKRVSLEED

Query:  DVRWLHTIFRAKLVGGPGGGV
        +V WLH +F AK  GGPGGGV
Subjt:  DVRWLHTIFRAKLVGGPGGGV

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]1.2e-1447.27Show/hide
Query:  HFFRPKGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRTSSKCFISMISMFIRFNVQEGKRVSLEEDDVRWLHTIFRAKLVG
        +  RP+GNR SLQTG+LDKT                 VEIELPVPDTLPTSAESF ++S+                     +  DDV WLH +FRAK  G
Subjt:  HFFRPKGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRTSSKCFISMISMFIRFNVQEGKRVSLEEDDVRWLHTIFRAKLVG

Query:  GPGGGVTNRI
        GPGGGVT  I
Subjt:  GPGGGVTNRI

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.1e-1650Show/hide
Query:  RPKGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRTSSKCFIS--MISMFIRFNVQEGKRVSLEEDDVRWLHTIFRAKLVGG
        +P+GN+ SLQTGELDKT                 VEIEL VPDTLPTSAES+ ++S  F +  M  + + FNV  G    +  DDV  LH +FRAK  GG
Subjt:  RPKGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRTSSKCFIS--MISMFIRFNVQEGKRVSLEEDDVRWLHTIFRAKLVGG

Query:  PGGGVT
        PGGGVT
Subjt:  PGGGVT

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]1.0e-1847.93Show/hide
Query:  PKGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRTSSKCFISMISMFIRFNV---------------QEGKRVSLEEDDVRW
        P+GNRSSLQTGELDKT                 VEIELPVPDTLPTSAESF ++S  ++ +   F+   +                EG    +  DDV W
Subjt:  PKGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRTSSKCFISMISMFIRFNV---------------QEGKRVSLEEDDVRW

Query:  LHTIFRAKLVGGPGGGVTNRI
        LHT+FRAK+ GGPGGGVT RI
Subjt:  LHTIFRAKLVGGPGGGVTNRI

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.4e-1545.9Show/hide
Query:  FFRPKGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESFRTSSKCFISM------ISMF------------IRFNVQEGKRVSLEED
        +  P+GNR SLQTGELDKTV                IELPVPDTLPTSAES  ++S  ++ +      + MF            + FNV  G    +  D
Subjt:  FFRPKGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESFRTSSKCFISM------ISMF------------IRFNVQEGKRVSLEED

Query:  DVRWLHTIFRAKLVGGPGGGVT
        DV WLH +FRAK VGGPGGGVT
Subjt:  DVRWLHTIFRAKLVGGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein9.6e-1543.8Show/hide
Query:  RPKGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRTSSKCFISMISMFIR------------------FNVQEGKRVSLEED
        RP+GNR+SLQTGELDKT                 VEIELPVPDTLPTSAES  ++S  ++ +   F+                   FNV  G    +  D
Subjt:  RPKGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRTSSKCFISMISMFIR------------------FNVQEGKRVSLEED

Query:  DVRWLHTIFRAKLVGGPGGGV
        +V WLH +F AK  GGPGGGV
Subjt:  DVRWLHTIFRAKLVGGPGGGV

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein3.9e-1650Show/hide
Query:  RPKGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRTSSKCFIS--MISMFIRFNVQEGKRVSLEEDDVRWLHTIFRAKLVGG
        +P+GN+ SLQTGELDKT                 VEIEL VPDTLPTSAES+ ++S  F +  M  + + FNV  G    +  DDV  LH +FRAK  GG
Subjt:  RPKGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRTSSKCFIS--MISMFIRFNVQEGKRVSLEEDDVRWLHTIFRAKLVGG

Query:  PGGGVT
        PGGGVT
Subjt:  PGGGVT

A0A5A7VIY9 Uncharacterized protein4.9e-1947.93Show/hide
Query:  PKGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRTSSKCFISMISMFIRFNV---------------QEGKRVSLEEDDVRW
        P+GNRSSLQTGELDKT                 VEIELPVPDTLPTSAESF ++S  ++ +   F+   +                EG    +  DDV W
Subjt:  PKGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRTSSKCFISMISMFIRFNV---------------QEGKRVSLEEDDVRW

Query:  LHTIFRAKLVGGPGGGVTNRI
        LHT+FRAK+ GGPGGGVT RI
Subjt:  LHTIFRAKLVGGPGGGVTNRI

A0A5D3BAD1 Retrotrans_gag domain-containing protein5.6e-1547.27Show/hide
Query:  HFFRPKGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRTSSKCFISMISMFIRFNVQEGKRVSLEEDDVRWLHTIFRAKLVG
        +  RP+GNR SLQTG+LDKT                 VEIELPVPDTLPTSAESF ++S+                     +  DDV WLH +FRAK  G
Subjt:  HFFRPKGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRTSSKCFISMISMFIRFNVQEGKRVSLEEDDVRWLHTIFRAKLVG

Query:  GPGGGVTNRI
        GPGGGVT  I
Subjt:  GPGGGVTNRI

A0A5D3CJX3 CCHC-type domain-containing protein6.7e-1645.9Show/hide
Query:  FFRPKGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESFRTSSKCFISM------ISMF------------IRFNVQEGKRVSLEED
        +  P+GNR SLQTGELDKTV                IELPVPDTLPTSAES  ++S  ++ +      + MF            + FNV  G    +  D
Subjt:  FFRPKGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESFRTSSKCFISM------ISMF------------IRFNVQEGKRVSLEED

Query:  DVRWLHTIFRAKLVGGPGGGVT
        DV WLH +FRAK VGGPGGGVT
Subjt:  DVRWLHTIFRAKLVGGPGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTGGGAATCTCATTTTCATTTCTTCAGGCCAAAAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATAC
ACTGCCAACGTCTGCTGAAAGTTTCAGAACAAGCTCCAAATGCTTTATATCTATGATTAGTATGTTTATCAGGTTCAACGTTCAGGAGGGTAAGCGGGTATCGTTAGAGG
AGGACGATGTCCGTTGGCTTCACACCATCTTTCGGGCTAAGCTAGTAGGTGGTCCGGGAGGGGGTGTGACAAATAGGATTTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTGGGAATCTCATTTTCATTTCTTCAGGCCAAAAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATAC
ACTGCCAACGTCTGCTGAAAGTTTCAGAACAAGCTCCAAATGCTTTATATCTATGATTAGTATGTTTATCAGGTTCAACGTTCAGGAGGGTAAGCGGGTATCGTTAGAGG
AGGACGATGTCCGTTGGCTTCACACCATCTTTCGGGCTAAGCTAGTAGGTGGTCCGGGAGGGGGTGTGACAAATAGGATTTGTTAG
Protein sequenceShow/hide protein sequence
MGWESHFHFFRPKGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRTSSKCFISMISMFIRFNVQEGKRVSLEEDDVRWLHTIFRAKLVGGPGGGVTNRIC