; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028073 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028073
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold2:40725766..40730125
RNA-Seq ExpressionSpg028073
SyntenySpg028073
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]9.4e-3253.45Show/hide
Query:  EHINNLMKPVTLNEFFSKNFHKKEKENFA------TSYCIDV-------EEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQCSMSTSTRP
        EH     + +TL EF  ++F +   E         T+  ++V       EEVDNS + +QRTSVFDRIKP TTR  VFQR+SM   +EENQC MST  R 
Subjt:  EHINNLMKPVTLNEFFSKNFHKKEKENFA------TSYCIDV-------EEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQCSMSTSTRP

Query:  SAFQRLSVSTSKKSRSSISVFDRLKVINDQPQRKMDNLKVKLFDEVSSDKKFQSIVPSRMKRKFYVLINTEGSL
        SAF+RLS+STSKK R S S FDRLK+ NDQ QR+M + K K F E + D K  S VPSRMKRK  V INTEGSL
Subjt:  SAFQRLSVSTSKKSRSSISVFDRLKVINDQPQRKMDNLKVKLFDEVSSDKKFQSIVPSRMKRKFYVLINTEGSL

KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.5e-3356.97Show/hide
Query:  VTLNEFFSKNF---HKKEKENFATSYCIDV----------EEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQCSMSTSTRPSAFQRLSVS
        +TL EFF ++F   H KE       +   +          EEVDNS + +QRTSVFDRIKP TTR SVFQR+S+   +EENQC  ST TR SAF+ LS+S
Subjt:  VTLNEFFSKNF---HKKEKENFATSYCIDV----------EEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQCSMSTSTRPSAFQRLSVS

Query:  TSKKSRSSISVFDRLKVINDQPQRKMDNLKVKLFDEVSSDKKFQSIVPSRMKRKFYVLINTEGSL
        TSKK R S S FDRLK+INDQ QR+M +LKVK F E + D K  S VPSRMKRK  V INTEGSL
Subjt:  TSKKSRSSISVFDRLKVINDQPQRKMDNLKVKLFDEVSSDKKFQSIVPSRMKRKFYVLINTEGSL

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.5e-3256.36Show/hide
Query:  VTLNEFFSKNF---HKKEKENFATSYCIDV----------EEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQCSMSTSTRPSAFQRLSVS
        +TL EFF ++F   H +E     T +   +          EEVDNS + +QRTSVFDRIKP TTR SVFQR+SM   +EENQC  ST  R SAF+RLS+S
Subjt:  VTLNEFFSKNF---HKKEKENFATSYCIDV----------EEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQCSMSTSTRPSAFQRLSVS

Query:  TSKKSRSSISVFDRLKVINDQPQRKMDNLKVKLFDEVSSDKKFQSIVPSRMKRKFYVLINTEGSL
        TSKK R S S FDRLK+ NDQ QR+M +LK K F E + D K  S VPSRMKRK  V INTEGSL
Subjt:  TSKKSRSSISVFDRLKVINDQPQRKMDNLKVKLFDEVSSDKKFQSIVPSRMKRKFYVLINTEGSL

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.2e-3251.32Show/hide
Query:  MTETRTMKEKMTEMQEHINNLMKPVTLNEFFSKNFHKKEKENFA------TSYCIDV-------EEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVA
        M + + +KEK     E      + +TL EFF ++F +   E         T+  ++V       EEVDNS + +QRTSVFDRIKP TTR SVFQR+SM  
Subjt:  MTETRTMKEKMTEMQEHINNLMKPVTLNEFFSKNFHKKEKENFA------TSYCIDV-------EEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVA

Query:  TKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSISVFDRLKVINDQPQRKMDNLKVKLFDEVSSDKKFQSIVPSRMKRKFYVLINTEGSL
         +EENQC MST TR SAF+RLS+S SKK R S S FDRLK+ NDQ QR+M +LK K F E + D K  S VPSR+KRK  + INTEGSL
Subjt:  TKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSISVFDRLKVINDQPQRKMDNLKVKLFDEVSSDKKFQSIVPSRMKRKFYVLINTEGSL

TYK00108.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.5e-3356.36Show/hide
Query:  VTLNEFFSKNFHKKEKENF-------ATSYC------IDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQCSMSTSTRPSAFQRLSVS
        +TL EFF ++F +   E          TS+          EEVDNS + +QRTSVFDRIKP TTR SVFQR+SM   +E+NQC  ST TR SAF+RLS+S
Subjt:  VTLNEFFSKNFHKKEKENF-------ATSYC------IDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQCSMSTSTRPSAFQRLSVS

Query:  TSKKSRSSISVFDRLKVINDQPQRKMDNLKVKLFDEVSSDKKFQSIVPSRMKRKFYVLINTEGSL
        TSKK R S S FDR+K+INDQ QR+M +LK K F E + D K  S VPSRMKRK +V INTEGSL
Subjt:  TSKKSRSSISVFDRLKVINDQPQRKMDNLKVKLFDEVSSDKKFQSIVPSRMKRKFYVLINTEGSL

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein4.6e-3253.45Show/hide
Query:  EHINNLMKPVTLNEFFSKNFHKKEKENFA------TSYCIDV-------EEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQCSMSTSTRP
        EH     + +TL EF  ++F +   E         T+  ++V       EEVDNS + +QRTSVFDRIKP TTR  VFQR+SM   +EENQC MST  R 
Subjt:  EHINNLMKPVTLNEFFSKNFHKKEKENFA------TSYCIDV-------EEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQCSMSTSTRP

Query:  SAFQRLSVSTSKKSRSSISVFDRLKVINDQPQRKMDNLKVKLFDEVSSDKKFQSIVPSRMKRKFYVLINTEGSL
        SAF+RLS+STSKK R S S FDRLK+ NDQ QR+M + K K F E + D K  S VPSRMKRK  V INTEGSL
Subjt:  SAFQRLSVSTSKKSRSSISVFDRLKVINDQPQRKMDNLKVKLFDEVSSDKKFQSIVPSRMKRKFYVLINTEGSL

A0A5A7TGM1 Retrotransposon gag protein3.2e-3356.97Show/hide
Query:  VTLNEFFSKNF---HKKEKENFATSYCIDV----------EEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQCSMSTSTRPSAFQRLSVS
        +TL EFF ++F   H KE       +   +          EEVDNS + +QRTSVFDRIKP TTR SVFQR+S+   +EENQC  ST TR SAF+ LS+S
Subjt:  VTLNEFFSKNF---HKKEKENFATSYCIDV----------EEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQCSMSTSTRPSAFQRLSVS

Query:  TSKKSRSSISVFDRLKVINDQPQRKMDNLKVKLFDEVSSDKKFQSIVPSRMKRKFYVLINTEGSL
        TSKK R S S FDRLK+INDQ QR+M +LKVK F E + D K  S VPSRMKRK  V INTEGSL
Subjt:  TSKKSRSSISVFDRLKVINDQPQRKMDNLKVKLFDEVSSDKKFQSIVPSRMKRKFYVLINTEGSL

A0A5A7TQ06 Retrotransposon gag protein1.2e-3256.36Show/hide
Query:  VTLNEFFSKNF---HKKEKENFATSYCIDV----------EEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQCSMSTSTRPSAFQRLSVS
        +TL EFF ++F   H +E     T +   +          EEVDNS + +QRTSVFDRIKP TTR SVFQR+SM   +EENQC  ST  R SAF+RLS+S
Subjt:  VTLNEFFSKNF---HKKEKENFATSYCIDV----------EEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQCSMSTSTRPSAFQRLSVS

Query:  TSKKSRSSISVFDRLKVINDQPQRKMDNLKVKLFDEVSSDKKFQSIVPSRMKRKFYVLINTEGSL
        TSKK R S S FDRLK+ NDQ QR+M +LK K F E + D K  S VPSRMKRK  V INTEGSL
Subjt:  TSKKSRSSISVFDRLKVINDQPQRKMDNLKVKLFDEVSSDKKFQSIVPSRMKRKFYVLINTEGSL

A0A5A7U974 Retrotransposon gag protein2.0e-3251.32Show/hide
Query:  MTETRTMKEKMTEMQEHINNLMKPVTLNEFFSKNFHKKEKENFA------TSYCIDV-------EEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVA
        M + + +KEK     E      + +TL EFF ++F +   E         T+  ++V       EEVDNS + +QRTSVFDRIKP TTR SVFQR+SM  
Subjt:  MTETRTMKEKMTEMQEHINNLMKPVTLNEFFSKNFHKKEKENFA------TSYCIDV-------EEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVA

Query:  TKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSISVFDRLKVINDQPQRKMDNLKVKLFDEVSSDKKFQSIVPSRMKRKFYVLINTEGSL
         +EENQC MST TR SAF+RLS+S SKK R S S FDRLK+ NDQ QR+M +LK K F E + D K  S VPSR+KRK  + INTEGSL
Subjt:  TKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSISVFDRLKVINDQPQRKMDNLKVKLFDEVSSDKKFQSIVPSRMKRKFYVLINTEGSL

A0A5D3BLW3 Retrotransposon gag protein4.1e-3356.36Show/hide
Query:  VTLNEFFSKNFHKKEKENF-------ATSYC------IDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQCSMSTSTRPSAFQRLSVS
        +TL EFF ++F +   E          TS+          EEVDNS + +QRTSVFDRIKP TTR SVFQR+SM   +E+NQC  ST TR SAF+RLS+S
Subjt:  VTLNEFFSKNFHKKEKENF-------ATSYC------IDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQCSMSTSTRPSAFQRLSVS

Query:  TSKKSRSSISVFDRLKVINDQPQRKMDNLKVKLFDEVSSDKKFQSIVPSRMKRKFYVLINTEGSL
        TSKK R S S FDR+K+INDQ QR+M +LK K F E + D K  S VPSRMKRK +V INTEGSL
Subjt:  TSKKSRSSISVFDRLKVINDQPQRKMDNLKVKLFDEVSSDKKFQSIVPSRMKRKFYVLINTEGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTACTGCCCACTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAA
GTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGAAAGAAAAAATGACTGAGATGCAGGAGCACA
TCAACAACTTGATGAAGCCGGTGACTTTGAATGAATTCTTCTCCAAAAATTTCCACAAAAAGGAAAAAGAAAACTTTGCAACTTCCTATTGCATCGATGTAGAAGAAGTT
GACAATTCCAAGAAGGGTGAACAAAGGACTTCTGTCTTCGATCGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGTCGCGACAAAAGAAGA
AAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTTCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAATATCTGTCTTTGATCGCCTCAAAG
TAATAAACGATCAACCTCAAAGAAAGATGGATAATTTAAAGGTGAAATTGTTCGATGAAGTAAGCAGTGACAAGAAGTTTCAAAGTATTGTCCCATCACGTATGAAAAGG
AAGTTTTATGTTCTCATAAATACTGAAGGTTCCTTGAAGTTTTTTCTCTCCAAGTTCGAAGGTTCTCGCTCTCCAAGTTCGTTCTCACACTGCTTCGCTGCAGTTCCTTC
TCTCCTCCAAGTTCGAGTTCGTTCTCACGCTGCTTCGCTGCAGTCTCTTCTCTCCAATTTTGAAGATCCTCACGTTGCTTCGCTGCGTTGGGAAATATGTATCTTAAAAA
TTAAGATTTACAGTTTTGAGACTCGAACTCGAGGCCTTGGCTCATTTGAGAGGGGGAGCAGAAAGAAAGGAAGAGATTTTGGAAGCTCTCATTCAGATTCAGACGGAGTC
AGACACACTCAGAAGAGCATTCAGAGTCTAGAGGCATTCAGACTCAGAAGCATTCAAGTTCAGCCGATCCAAAAGAACATCAAGCCAGCAGGCCGATCATCTAGGAAGAT
TAACAAGTCAACAAGCCGATCCAAGAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGCCAGTAGGCCGACCATCCGAAAGATCAGCAAGCCAACAAGCCGAT
CCAAGAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGCCAGCAGGCCGATCACCCAAGAAGATCAACAAACCAACAAGCTGATCCAAGAGATCATCAAGCCA
ACAGGCCGATCCAAAAGATCATCAAGCCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCTACTGCCCACTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAA
GTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGAAAGAAAAAATGACTGAGATGCAGGAGCACA
TCAACAACTTGATGAAGCCGGTGACTTTGAATGAATTCTTCTCCAAAAATTTCCACAAAAAGGAAAAAGAAAACTTTGCAACTTCCTATTGCATCGATGTAGAAGAAGTT
GACAATTCCAAGAAGGGTGAACAAAGGACTTCTGTCTTCGATCGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGTCGCGACAAAAGAAGA
AAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTTCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAATATCTGTCTTTGATCGCCTCAAAG
TAATAAACGATCAACCTCAAAGAAAGATGGATAATTTAAAGGTGAAATTGTTCGATGAAGTAAGCAGTGACAAGAAGTTTCAAAGTATTGTCCCATCACGTATGAAAAGG
AAGTTTTATGTTCTCATAAATACTGAAGGTTCCTTGAAGTTTTTTCTCTCCAAGTTCGAAGGTTCTCGCTCTCCAAGTTCGTTCTCACACTGCTTCGCTGCAGTTCCTTC
TCTCCTCCAAGTTCGAGTTCGTTCTCACGCTGCTTCGCTGCAGTCTCTTCTCTCCAATTTTGAAGATCCTCACGTTGCTTCGCTGCGTTGGGAAATATGTATCTTAAAAA
TTAAGATTTACAGTTTTGAGACTCGAACTCGAGGCCTTGGCTCATTTGAGAGGGGGAGCAGAAAGAAAGGAAGAGATTTTGGAAGCTCTCATTCAGATTCAGACGGAGTC
AGACACACTCAGAAGAGCATTCAGAGTCTAGAGGCATTCAGACTCAGAAGCATTCAAGTTCAGCCGATCCAAAAGAACATCAAGCCAGCAGGCCGATCATCTAGGAAGAT
TAACAAGTCAACAAGCCGATCCAAGAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGCCAGTAGGCCGACCATCCGAAAGATCAGCAAGCCAACAAGCCGAT
CCAAGAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGCCAGCAGGCCGATCACCCAAGAAGATCAACAAACCAACAAGCTGATCCAAGAGATCATCAAGCCA
ACAGGCCGATCCAAAAGATCATCAAGCCAATAG
Protein sequenceShow/hide protein sequence
MGSTAHCCFNELTLQEDKASIVAGQETTLQGAYTNDKFLVKYNPLFEPDSDVVTVMMTETRTMKEKMTEMQEHINNLMKPVTLNEFFSKNFHKKEKENFATSYCIDVEEV
DNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSISVFDRLKVINDQPQRKMDNLKVKLFDEVSSDKKFQSIVPSRMKR
KFYVLINTEGSLKFFLSKFEGSRSPSSFSHCFAAVPSLLQVRVRSHAASLQSLLSNFEDPHVASLRWEICILKIKIYSFETRTRGLGSFERGSRKKGRDFGSSHSDSDGV
RHTQKSIQSLEAFRLRSIQVQPIQKNIKPAGRSSRKINKSTSRSKRSSSQQADPRDHQASRPTIRKISKPTSRSKRSSSQQADPRDHQASRPITQEDQQTNKLIQEIIKP
TGRSKRSSSQ