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Spg028105 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028105
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold2:44341077..44341949
RNA-Seq ExpressionSpg028105
SyntenySpg028105
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]1.8e-0844.79Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSSMIQ-----------------------------QGQQVSLEGDDVCGLHAISLTKLA
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ ++ ++                              G    + GDDVC LHA+   K A
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSSMIQ-----------------------------QGQQVSLEGDDVCGLHAISLTKLA

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]3.7e-0951.06Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSMIQ------QGQQVSLEG----DDVCGLHAISLTKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SS+ ++        +   L G    DDVC LHA+   K A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSMIQ------QGQQVSLEG----DDVCGLHAISLTKLA

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]2.0e-0748.42Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSMIQQGQ-------QVSLE------GDDVCGLHAISLTK
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS    Q          +S+E      GDDVC LHA+   K
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSMIQQGQ-------QVSLE------GDDVCGLHAISLTK

TYK11693.1 gag protease polyprotein [Cucumis melo var. makuwa]9.2e-0852.44Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSMIQQGQQVSLEGDDVCGLHAISLTK
        +TEILS RLYGTVCTQ                 VEIELPVPDTLPTSAESS+S+S S         + GDDVC LH +   K
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSMIQQGQQVSLEGDDVCGLHAISLTK

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]3.7e-0951.06Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSMIQ------QGQQVSLEG----DDVCGLHAISLTKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SS+ ++        +   L G    DDVC LHA+   K A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSMIQ------QGQQVSLEG----DDVCGLHAISLTKLA

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein8.9e-0944.79Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSSMIQ-----------------------------QGQQVSLEGDDVCGLHAISLTKLA
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ ++ ++                              G    + GDDVC LHA+   K A
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSSMIQ-----------------------------QGQQVSLEGDDVCGLHAISLTKLA

A0A5A7VMG9 Reverse transcriptase1.8e-0951.06Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSMIQ------QGQQVSLEG----DDVCGLHAISLTKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SS+ ++        +   L G    DDVC LHA+   K A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSMIQ------QGQQVSLEG----DDVCGLHAISLTKLA

A0A5D3BMJ4 Retrotrans_gag domain-containing protein9.9e-0848.42Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSMIQQGQ-------QVSLE------GDDVCGLHAISLTK
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS    Q          +S+E      GDDVC LHA+   K
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSMIQQGQ-------QVSLE------GDDVCGLHAISLTK

A0A5D3CIF4 Gag protease polyprotein4.4e-0852.44Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSMIQQGQQVSLEGDDVCGLHAISLTK
        +TEILS RLYGTVCTQ                 VEIELPVPDTLPTSAESS+S+S S         + GDDVC LH +   K
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSMIQQGQQVSLEGDDVCGLHAISLTK

A0A5D3DX39 Reverse transcriptase1.8e-0951.06Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSMIQ------QGQQVSLEG----DDVCGLHAISLTKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SS+ ++        +   L G    DDVC LHA+   K A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSMIQ------QGQQVSLEG----DDVCGLHAISLTKLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCCAGATCAAG
CTCCAGTTCAATGATTCAGCAGGGTCAACAGGTATCGTTAGAGGGGGACGATGTCTGTGGGCTTCATGCCATCTCCCTGACTAAGCTAGCT
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCCAGATCAAG
CTCCAGTTCAATGATTCAGCAGGGTCAACAGGTATCGTTAGAGGGGGACGATGTCTGTGGGCTTCATGCCATCTCCCTGACTAAGCTAGCT
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSSMIQQGQQVSLEGDDVCGLHAISLTKLA