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Spg028111 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028111
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold2:43561549..43564063
RNA-Seq ExpressionSpg028111
SyntenySpg028111
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]7.3e-3454.76Show/hide
Query:  AEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFNDNLTFLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDDEIDAVEELLPKE---SLNSS
        A+I TP E+LFEILL +GYVS+EY   +L  +G++++LT  FHAGAKGH+LEQC+ F   VQEL+DSK L VA + HQ   I+ VE++   E   +  SS
Subjt:  AEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFNDNLTFLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDDEIDAVEELLPKE---SLNSS

Query:  FKLKP--LTIYYREKTTTHD--PKSITIQVPTPFKYKSSKAVPWSYEYKVTINSE--KPPLPVDNIFG
          LKP  LTI+Y EK    +   K ITI VP PF+YKSSKAVPW YE KVT+  +   PPLPVDNI G
Subjt:  FKLKP--LTIYYREKTTTHD--PKSITIQVPTPFKYKSSKAVPWSYEYKVTINSE--KPPLPVDNIFG

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]1.4e-3247.03Show/hide
Query:  PFPPFKEGQIPQI------PMASQAEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFNDNLTFLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAH
        P P  K  QI  +        +  +EI TP + LFEIL  +GY+S+E+   D+  E +++NLT  +HAGA+GH LEQC  F ++VQEL+D K L V Q+ 
Subjt:  PFPPFKEGQIPQI------PMASQAEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFNDNLTFLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAH

Query:  HQDDEIDAVEELLPKESLNSSFKLKPLTIYYREK--TTTHDPKSITIQVPTPFKYKSSKAVPWSYEYKVTI--NSEKPPLPVDNI
        HQ+  ID VE +   ES ++++K KPLT+ YREK    ++  + ITIQVP PF+Y SSKAVPW YE KVT+   ++   LPVDNI
Subjt:  HQDDEIDAVEELLPKESLNSSFKLKPLTIYYREK--TTTHDPKSITIQVPTPFKYKSSKAVPWSYEYKVTI--NSEKPPLPVDNI

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]2.4e-1351.96Show/hide
Query:  EEKGEQEKTKRDIEEIRGKVDAIIAALEKGKMVADTTAPDTPIGNPQAGLPFPPSF---ASHVRTTAETSMPQHTTYNPLYDIPVGQYPFPPFKEGQIPQ
        + K EQEKT++DIEE+R K+DAI+ ALEKGK +A+T+ P      PQ    F PSF       R   E  M Q+TTYNPLYDIP GQ+P PP   G  PQ
Subjt:  EEKGEQEKTKRDIEEIRGKVDAIIAALEKGKMVADTTAPDTPIGNPQAGLPFPPSF---ASHVRTTAETSMPQHTTYNPLYDIPVGQYPFPPFKEGQIPQ

Query:  IP
         P
Subjt:  IP

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]3.1e-3251.53Show/hide
Query:  AEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFNDNLTFLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDDEIDAVEELLPKESLNSSFKL
        A+I TP  +LFEILL +GY+S+EY       +G++++LT  FH GAKGHSLEQC+ F  +VQEL+DSK L  A +H +    + VE++L  E  + S K 
Subjt:  AEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFNDNLTFLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDDEIDAVEELLPKESLNSSFKL

Query:  KPLTIYYREK--TTTHDPKSITIQVPTPFKYKSSKAVPWSYEYKVTINSE--KPPLPVDNIFG
        KPLTI+YREK    +   K   I VP PF+YKSSKAVPW YE KVT+  +   P LPVDNI G
Subjt:  KPLTIYYREK--TTTHDPKSITIQVPTPFKYKSSKAVPWSYEYKVTINSE--KPPLPVDNIFG

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]2.3e-3554.66Show/hide
Query:  AEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFNDNLTFLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDDEIDAVEELLPKESLNSSFKL
        A+I TPKE+LFEILL +GYVS+EY   +L  + ++++LT  FHAGAKGHSLEQC+ F  +VQEL+DSK L VA + HQ   I+ VE++   E  + + K 
Subjt:  AEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFNDNLTFLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDDEIDAVEELLPKESLNSSFKL

Query:  KPLTIYYREK--TTTHDPKSITIQVPTPFKYKSSKAVPWSYEYKVTINSE--KPPLPVDNI
        K LTI+Y EK    +   K ITI VP PF+YKSSKAVPW Y+ KVT+  +   PPLPVDNI
Subjt:  KPLTIYYREK--TTTHDPKSITIQVPTPFKYKSSKAVPWSYEYKVTINSE--KPPLPVDNI

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]3.6e-1752.53Show/hide
Query:  EEKGEQEKTKRDIEEIRGKVDAIIAALEKGKMVADTTAPDTPIGNPQAGLPFPPSFASHVRTTAETSMPQHTTYNPLYDIPVGQYPFPPFKEGQIPQIP
        ++K EQEKT++DIEE+R K+D I   LEKGK  AD      PI  PQ   P+PP +   +R  AE  MPQ+TTYNPLYD+P+GQYP    K  Q  QIP
Subjt:  EEKGEQEKTKRDIEEIRGKVDAIIAALEKGKMVADTTAPDTPIGNPQAGLPFPPSFASHVRTTAETSMPQHTTYNPLYDIPVGQYPFPPFKEGQIPQIP

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]6.6e-3548.69Show/hide
Query:  VGQYPFPPFKEGQIPQI------PMASQAEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFNDNLTFLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVV
        V + P P  +  QI  I        +  A+I TP  +LFEILL +GYVS+EY   +L  +G++++LT  FHAGAKGHSLEQC+ F  +VQEL+DSK L V
Subjt:  VGQYPFPPFKEGQIPQI------PMASQAEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFNDNLTFLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVV

Query:  AQAHHQDDEIDAVEELLPKESLNSSFKLKPLTIYYREKTTTHD--PKSITIQVPTPFKYKSSKAVPWSYEYKVTINSE--KPPLPVDNIFG
        A + HQ   I+ VE++   E  + + K K LTI+Y EK    +   K ITI VP PF+YKSSKAVPW Y+ KVT+  +   PPLP+DNI G
Subjt:  AQAHHQDDEIDAVEELLPKESLNSSFKLKPLTIYYREKTTTHD--PKSITIQVPTPFKYKSSKAVPWSYEYKVTINSE--KPPLPVDNIFG

TrEMBL top hitse value%identityAlignment
A0A6J1CNY7 Ribonuclease H3.5e-3454.76Show/hide
Query:  AEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFNDNLTFLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDDEIDAVEELLPKE---SLNSS
        A+I TP E+LFEILL +GYVS+EY   +L  +G++++LT  FHAGAKGH+LEQC+ F   VQEL+DSK L VA + HQ   I+ VE++   E   +  SS
Subjt:  AEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFNDNLTFLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDDEIDAVEELLPKE---SLNSS

Query:  FKLKP--LTIYYREKTTTHD--PKSITIQVPTPFKYKSSKAVPWSYEYKVTINSE--KPPLPVDNIFG
          LKP  LTI+Y EK    +   K ITI VP PF+YKSSKAVPW YE KVT+  +   PPLPVDNI G
Subjt:  FKLKP--LTIYYREKTTTHD--PKSITIQVPTPFKYKSSKAVPWSYEYKVTINSE--KPPLPVDNIFG

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222316.6e-3347.03Show/hide
Query:  PFPPFKEGQIPQI------PMASQAEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFNDNLTFLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAH
        P P  K  QI  +        +  +EI TP + LFEIL  +GY+S+E+   D+  E +++NLT  +HAGA+GH LEQC  F ++VQEL+D K L V Q+ 
Subjt:  PFPPFKEGQIPQI------PMASQAEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFNDNLTFLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAH

Query:  HQDDEIDAVEELLPKESLNSSFKLKPLTIYYREK--TTTHDPKSITIQVPTPFKYKSSKAVPWSYEYKVTI--NSEKPPLPVDNI
        HQ+  ID VE +   ES ++++K KPLT+ YREK    ++  + ITIQVP PF+Y SSKAVPW YE KVT+   ++   LPVDNI
Subjt:  HQDDEIDAVEELLPKESLNSSFKLKPLTIYYREK--TTTHDPKSITIQVPTPFKYKSSKAVPWSYEYKVTI--NSEKPPLPVDNI

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.2e-1351.96Show/hide
Query:  EEKGEQEKTKRDIEEIRGKVDAIIAALEKGKMVADTTAPDTPIGNPQAGLPFPPSF---ASHVRTTAETSMPQHTTYNPLYDIPVGQYPFPPFKEGQIPQ
        + K EQEKT++DIEE+R K+DAI+ ALEKGK +A+T+ P      PQ    F PSF       R   E  M Q+TTYNPLYDIP GQ+P PP   G  PQ
Subjt:  EEKGEQEKTKRDIEEIRGKVDAIIAALEKGKMVADTTAPDTPIGNPQAGLPFPPSF---ASHVRTTAETSMPQHTTYNPLYDIPVGQYPFPPFKEGQIPQ

Query:  IP
         P
Subjt:  IP

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.1e-3251.53Show/hide
Query:  AEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFNDNLTFLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDDEIDAVEELLPKESLNSSFKL
        A+I TP  +LFEILL +GY+S+EY       +G++++LT  FH GAKGHSLEQC+ F  +VQEL+DSK L  A +H +    + VE++L  E  + S K 
Subjt:  AEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFNDNLTFLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDDEIDAVEELLPKESLNSSFKL

Query:  KPLTIYYREK--TTTHDPKSITIQVPTPFKYKSSKAVPWSYEYKVTINSE--KPPLPVDNIFG
        KPLTI+YREK    +   K   I VP PF+YKSSKAVPW YE KVT+  +   P LPVDNI G
Subjt:  KPLTIYYREK--TTTHDPKSITIQVPTPFKYKSSKAVPWSYEYKVTINSE--KPPLPVDNIFG

A0A6J1DZ90 Ribonuclease H1.1e-3554.66Show/hide
Query:  AEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFNDNLTFLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDDEIDAVEELLPKESLNSSFKL
        A+I TPKE+LFEILL +GYVS+EY   +L  + ++++LT  FHAGAKGHSLEQC+ F  +VQEL+DSK L VA + HQ   I+ VE++   E  + + K 
Subjt:  AEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFNDNLTFLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDDEIDAVEELLPKESLNSSFKL

Query:  KPLTIYYREK--TTTHDPKSITIQVPTPFKYKSSKAVPWSYEYKVTINSE--KPPLPVDNI
        K LTI+Y EK    +   K ITI VP PF+YKSSKAVPW Y+ KVT+  +   PPLPVDNI
Subjt:  KPLTIYYREK--TTTHDPKSITIQVPTPFKYKSSKAVPWSYEYKVTINSE--KPPLPVDNI

A0A6J1DZ90 Ribonuclease H1.8e-1752.53Show/hide
Query:  EEKGEQEKTKRDIEEIRGKVDAIIAALEKGKMVADTTAPDTPIGNPQAGLPFPPSFASHVRTTAETSMPQHTTYNPLYDIPVGQYPFPPFKEGQIPQIP
        ++K EQEKT++DIEE+R K+D I   LEKGK  AD      PI  PQ   P+PP +   +R  AE  MPQ+TTYNPLYD+P+GQYP    K  Q  QIP
Subjt:  EEKGEQEKTKRDIEEIRGKVDAIIAALEKGKMVADTTAPDTPIGNPQAGLPFPPSFASHVRTTAETSMPQHTTYNPLYDIPVGQYPFPPFKEGQIPQIP

A0A6J1DZ90 Ribonuclease H3.2e-3548.69Show/hide
Query:  VGQYPFPPFKEGQIPQI------PMASQAEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFNDNLTFLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVV
        V + P P  +  QI  I        +  A+I TP  +LFEILL +GYVS+EY   +L  +G++++LT  FHAGAKGHSLEQC+ F  +VQEL+DSK L V
Subjt:  VGQYPFPPFKEGQIPQI------PMASQAEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFNDNLTFLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVV

Query:  AQAHHQDDEIDAVEELLPKESLNSSFKLKPLTIYYREKTTTHD--PKSITIQVPTPFKYKSSKAVPWSYEYKVTINSE--KPPLPVDNIFG
        A + HQ   I+ VE++   E  + + K K LTI+Y EK    +   K ITI VP PF+YKSSKAVPW Y+ KVT+  +   PPLP+DNI G
Subjt:  AQAHHQDDEIDAVEELLPKESLNSSFKLKPLTIYYREKTTTHD--PKSITIQVPTPFKYKSSKAVPWSYEYKVTINSE--KPPLPVDNIFG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAGGAGAGCCCGAGGATTTGCAGAATGGGCAAGGGATCTGCGAGAGAATACATCACATATGGCCTCTAATGCGGAGGAGTTGTTTGAGTTTTTAGGGATGATTCG
TAGAGACCTTGGTAAAATAGCTCGTTCAACAAGAGTCTACCACGCTTACAACACTAGGCGTAGAACAAGGATTATGGAAGAAAAGGGTGAACAAGAGAAGACTAAGCGAG
ACATCGAGGAAATCAGGGGAAAGGTTGATGCAATCATTGCCGCTTTAGAAAAGGGCAAAATGGTTGCAGATACGACTGCACCAGACACTCCAATTGGAAACCCCCAGGCT
GGCCTACCATTTCCACCTAGTTTCGCTTCACATGTTCGTACGACAGCAGAAACGTCCATGCCACAACATACTACCTATAACCCCTTATATGACATACCTGTTGGGCAATA
CCCTTTTCCACCATTTAAAGAAGGCCAAATCCCCCAAATCCCCATGGCTAGCCAAGCCGAGATCATGACTCCTAAGGAGAAGCTTTTTGAGATTCTCCTCGTTAACGGAT
ATGTATCAATAGAGTATGCACACAAGGACCTTGTTCAAGAAGGATTCAATGATAATTTGACTTTCCTATTTCATGCTGGGGCAAAGGGACATTCTTTGGAACAATGTCAT
CATTTTCATAAAAGGGTCCAAGAACTGGTGGATTCAAAATTTCTTGTGGTTGCCCAAGCCCATCACCAGGATGATGAAATAGACGCCGTGGAAGAATTGCTGCCTAAAGA
AAGTTTGAATTCATCTTTCAAACTGAAGCCACTCACGATCTATTACCGTGAGAAGACTACTACTCATGATCCAAAGTCGATCACCATTCAGGTGCCGACTCCTTTCAAGT
ACAAGAGTTCAAAGGCAGTACCATGGAGTTATGAGTACAAAGTAACTATTAACTCAGAAAAGCCACCACTTCCAGTTGACAACATTTTCGGAACATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAGGAGAGCCCGAGGATTTGCAGAATGGGCAAGGGATCTGCGAGAGAATACATCACATATGGCCTCTAATGCGGAGGAGTTGTTTGAGTTTTTAGGGATGATTCG
TAGAGACCTTGGTAAAATAGCTCGTTCAACAAGAGTCTACCACGCTTACAACACTAGGCGTAGAACAAGGATTATGGAAGAAAAGGGTGAACAAGAGAAGACTAAGCGAG
ACATCGAGGAAATCAGGGGAAAGGTTGATGCAATCATTGCCGCTTTAGAAAAGGGCAAAATGGTTGCAGATACGACTGCACCAGACACTCCAATTGGAAACCCCCAGGCT
GGCCTACCATTTCCACCTAGTTTCGCTTCACATGTTCGTACGACAGCAGAAACGTCCATGCCACAACATACTACCTATAACCCCTTATATGACATACCTGTTGGGCAATA
CCCTTTTCCACCATTTAAAGAAGGCCAAATCCCCCAAATCCCCATGGCTAGCCAAGCCGAGATCATGACTCCTAAGGAGAAGCTTTTTGAGATTCTCCTCGTTAACGGAT
ATGTATCAATAGAGTATGCACACAAGGACCTTGTTCAAGAAGGATTCAATGATAATTTGACTTTCCTATTTCATGCTGGGGCAAAGGGACATTCTTTGGAACAATGTCAT
CATTTTCATAAAAGGGTCCAAGAACTGGTGGATTCAAAATTTCTTGTGGTTGCCCAAGCCCATCACCAGGATGATGAAATAGACGCCGTGGAAGAATTGCTGCCTAAAGA
AAGTTTGAATTCATCTTTCAAACTGAAGCCACTCACGATCTATTACCGTGAGAAGACTACTACTCATGATCCAAAGTCGATCACCATTCAGGTGCCGACTCCTTTCAAGT
ACAAGAGTTCAAAGGCAGTACCATGGAGTTATGAGTACAAAGTAACTATTAACTCAGAAAAGCCACCACTTCCAGTTGACAACATTTTCGGAACATGA
Protein sequenceShow/hide protein sequence
MARRARGFAEWARDLRENTSHMASNAEELFEFLGMIRRDLGKIARSTRVYHAYNTRRRTRIMEEKGEQEKTKRDIEEIRGKVDAIIAALEKGKMVADTTAPDTPIGNPQA
GLPFPPSFASHVRTTAETSMPQHTTYNPLYDIPVGQYPFPPFKEGQIPQIPMASQAEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFNDNLTFLFHAGAKGHSLEQCH
HFHKRVQELVDSKFLVVAQAHHQDDEIDAVEELLPKESLNSSFKLKPLTIYYREKTTTHDPKSITIQVPTPFKYKSSKAVPWSYEYKVTINSEKPPLPVDNIFGT