; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028112 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028112
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold2:46305524..46307506
RNA-Seq ExpressionSpg028112
SyntenySpg028112
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043405.1 hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa]7.9e-3948.54Show/hide
Query:  ARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-------------KKLLKEGYSLPTTRKGLGYKSPEP
        A KE  + + T   +KGEASTS  K  ++ DEK SN  ILRYVPLSRR+KGESPF +  + +K             KKLL+EG+ +P +RKG GYKSPEP
Subjt:  ARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-------------KKLLKEGYSLPTTRKGLGYKSPEP

Query:  VRITRRGKAKVADTNHITVEEVDDSKEKESVDQRTFVFRRIRPPVARALVFQRLSVNEAEEESAQPTNSSTRPSVFRRLSMPIGDEESTFSTPNVTRPSA
        + I R+ K KV D+NHITV EVD  +EKE   QR   F +IRP V R  VF+RLSV + E +  Q T+S  + S  +RL+M    E+ T      TRPSA
Subjt:  VRITRRGKAKVADTNHITVEEVDDSKEKESVDQRTFVFRRIRPPVARALVFQRLSVNEAEEESAQPTNSSTRPSVFRRLSMPIGDEESTFSTPNVTRPSA

Query:  FQRLNM
        F+RL++
Subjt:  FQRLNM

KAA0047672.1 uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa]3.9e-3844.87Show/hide
Query:  DDSQGEALETVTCHIVDVVEDDDVPTSSSGTPHADARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIKK-
        +DS  EA+ ++   +V+  ++  + + +S  PH        +  +T    K EASTS AK  ++ +E  SN PILRYVPLSR KKGESPF E  + +K  
Subjt:  DDSQGEALETVTCHIVDVVEDDDVPTSSSGTPHADARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIKK-

Query:  --KLLKEGYSL---PTTRKGLGYKSPEPVRITRRGKAKVADTNHITVEEVDDSKEKESVDQRTFVFRRIRPPVARALVFQRLSVNEAEEESAQPTNSSTR
          ++LKE +++     T+KGLGYKSPEP+RITR+GK KV D+NHITV+EVD  + KE   QRT  F RI P VARA VF+RLS+ EA+ +  Q T++  R
Subjt:  --KLLKEGYSL---PTTRKGLGYKSPEPVRITRRGKAKVADTNHITVEEVDDSKEKESVDQRTFVFRRIRPPVARALVFQRLSVNEAEEESAQPTNSSTR

Query:  PSVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNM
         S F+RL++   +E+        T+PSAF+RL++
Subjt:  PSVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNM

KAA0055957.1 uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]2.9e-4145.76Show/hide
Query:  ARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-------------------------------------
        A KE  + + T    K EAST+ AK  ++ DEK SN PILRYVPLSRRKKGESPF E  + +K                                     
Subjt:  ARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-------------------------------------

Query:  ------KKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADTNHITVEEVDDSKEKESVDQRTFVFRRIRPPVARALVFQRLSVNEAEEESAQPTNSS
              KKLL+EG+ +P +RKGLGYKSPEP+RITR+GK KV D NHITV+EVD  +EKE  +QRT  F RI P VARA VF+RLS+ EA+ +  Q T++ 
Subjt:  ------KKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADTNHITVEEVDDSKEKESVDQRTFVFRRIRPPVARALVFQRLSVNEAEEESAQPTNSS

Query:  TRPSVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNM
         R S F+RL++   +E+    T   T+PSAF+RL++
Subjt:  TRPSVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNM

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-4132.5Show/hide
Query:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFLCPPQPITLAEYFPRRFLDDSQGEALETVT---
        SQEK   IE+++EGWT+V RRKK+K +  +KESRL+ + +R  K+QK K KKK+R+ K V E+ +DF    + +TLA++FP RFL D Q E    V    
Subjt:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFLCPPQPITLAEYFPRRFLDDSQGEALETVT---

Query:  --------------CHIVDVVEDD-----------------------------------DVPTS------------------------------------
                      C  +D  ++D                                    +P S                                    
Subjt:  --------------CHIVDVVEDD-----------------------------------DVPTS------------------------------------

Query:  -SSGTPH------------------ADARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK----------
         + G+P                   + A +E+ +   T    K EASTS AK  +V DEK SN PILRYVPLSRRKKGESPF E  + +K          
Subjt:  -SSGTPH------------------ADARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK----------

Query:  -------------------------------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKA
                                                                           KKLL+EG+++P +RKGLGYK PEP+RITR+GK 
Subjt:  -------------------------------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKA

Query:  KVADTNHITVEEVDDSKEKESVDQRTFVFRRIRPPVARALVFQRLSVNEAEEESAQPTNSSTRPSVFRRLSMPIGDEEST
        KV D+NHITV+EVD  +EKE   QRT  F R+ P VARA VF+RLS+ EAE +  Q T+S  R S F+RL+M   +E+ +
Subjt:  KVADTNHITVEEVDDSKEKESVDQRTFVFRRIRPPVARALVFQRLSVNEAEEESAQPTNSSTRPSVFRRLSMPIGDEEST

TYK28162.1 uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]3.2e-4043.9Show/hide
Query:  ARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-------------------------------------
        A KE  + + T    K EAST+ AK  ++ DEK SN PILRYVPLSRRKKGESPF E  + +K                                     
Subjt:  ARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-------------------------------------

Query:  ----------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADTNHITVEEVDDSKEKESVDQRTFVFRRIRPPVARALVFQRLSVNEAE
                        KKLL+EG+ +P +RKGLGYKSPEP+RITR+GK KV D+NHITV+EVD  +EKE  +QRT  F RI P VARA VF+RLS+ EAE
Subjt:  ----------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADTNHITVEEVDDSKEKESVDQRTFVFRRIRPPVARALVFQRLSVNEAE

Query:  EESAQPTNSSTRPSVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNM
         +  Q T++  + S F+RL++   +E+    T   T+PSAF+RL++
Subjt:  EESAQPTNSSTRPSVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNM

TrEMBL top hitse value%identityAlignment
A0A5A7TPR5 RNase H domain-containing protein3.8e-3948.54Show/hide
Query:  ARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-------------KKLLKEGYSLPTTRKGLGYKSPEP
        A KE  + + T   +KGEASTS  K  ++ DEK SN  ILRYVPLSRR+KGESPF +  + +K             KKLL+EG+ +P +RKG GYKSPEP
Subjt:  ARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-------------KKLLKEGYSLPTTRKGLGYKSPEP

Query:  VRITRRGKAKVADTNHITVEEVDDSKEKESVDQRTFVFRRIRPPVARALVFQRLSVNEAEEESAQPTNSSTRPSVFRRLSMPIGDEESTFSTPNVTRPSA
        + I R+ K KV D+NHITV EVD  +EKE   QR   F +IRP V R  VF+RLSV + E +  Q T+S  + S  +RL+M    E+ T      TRPSA
Subjt:  VRITRRGKAKVADTNHITVEEVDDSKEKESVDQRTFVFRRIRPPVARALVFQRLSVNEAEEESAQPTNSSTRPSVFRRLSMPIGDEESTFSTPNVTRPSA

Query:  FQRLNM
        F+RL++
Subjt:  FQRLNM

A0A5A7UMY2 Reverse transcriptase domain-containing protein1.4e-4145.76Show/hide
Query:  ARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-------------------------------------
        A KE  + + T    K EAST+ AK  ++ DEK SN PILRYVPLSRRKKGESPF E  + +K                                     
Subjt:  ARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-------------------------------------

Query:  ------KKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADTNHITVEEVDDSKEKESVDQRTFVFRRIRPPVARALVFQRLSVNEAEEESAQPTNSS
              KKLL+EG+ +P +RKGLGYKSPEP+RITR+GK KV D NHITV+EVD  +EKE  +QRT  F RI P VARA VF+RLS+ EA+ +  Q T++ 
Subjt:  ------KKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADTNHITVEEVDDSKEKESVDQRTFVFRRIRPPVARALVFQRLSVNEAEEESAQPTNSS

Query:  TRPSVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNM
         R S F+RL++   +E+    T   T+PSAF+RL++
Subjt:  TRPSVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNM

A0A5D3BY54 Ty3-gypsy retrotransposon protein8.3e-4232.5Show/hide
Query:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFLCPPQPITLAEYFPRRFLDDSQGEALETVT---
        SQEK   IE+++EGWT+V RRKK+K +  +KESRL+ + +R  K+QK K KKK+R+ K V E+ +DF    + +TLA++FP RFL D Q E    V    
Subjt:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFLCPPQPITLAEYFPRRFLDDSQGEALETVT---

Query:  --------------CHIVDVVEDD-----------------------------------DVPTS------------------------------------
                      C  +D  ++D                                    +P S                                    
Subjt:  --------------CHIVDVVEDD-----------------------------------DVPTS------------------------------------

Query:  -SSGTPH------------------ADARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK----------
         + G+P                   + A +E+ +   T    K EASTS AK  +V DEK SN PILRYVPLSRRKKGESPF E  + +K          
Subjt:  -SSGTPH------------------ADARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK----------

Query:  -------------------------------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKA
                                                                           KKLL+EG+++P +RKGLGYK PEP+RITR+GK 
Subjt:  -------------------------------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKA

Query:  KVADTNHITVEEVDDSKEKESVDQRTFVFRRIRPPVARALVFQRLSVNEAEEESAQPTNSSTRPSVFRRLSMPIGDEEST
        KV D+NHITV+EVD  +EKE   QRT  F R+ P VARA VF+RLS+ EAE +  Q T+S  R S F+RL+M   +E+ +
Subjt:  KVADTNHITVEEVDDSKEKESVDQRTFVFRRIRPPVARALVFQRLSVNEAEEESAQPTNSSTRPSVFRRLSMPIGDEEST

A0A5D3C8N8 Ribonuclease H1.9e-3844.87Show/hide
Query:  DDSQGEALETVTCHIVDVVEDDDVPTSSSGTPHADARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIKK-
        +DS  EA+ ++   +V+  ++  + + +S  PH        +  +T    K EASTS AK  ++ +E  SN PILRYVPLSR KKGESPF E  + +K  
Subjt:  DDSQGEALETVTCHIVDVVEDDDVPTSSSGTPHADARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIKK-

Query:  --KLLKEGYSL---PTTRKGLGYKSPEPVRITRRGKAKVADTNHITVEEVDDSKEKESVDQRTFVFRRIRPPVARALVFQRLSVNEAEEESAQPTNSSTR
          ++LKE +++     T+KGLGYKSPEP+RITR+GK KV D+NHITV+EVD  + KE   QRT  F RI P VARA VF+RLS+ EA+ +  Q T++  R
Subjt:  --KLLKEGYSL---PTTRKGLGYKSPEPVRITRRGKAKVADTNHITVEEVDDSKEKESVDQRTFVFRRIRPPVARALVFQRLSVNEAEEESAQPTNSSTR

Query:  PSVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNM
         S F+RL++   +E+        T+PSAF+RL++
Subjt:  PSVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNM

A0A5D3DXC7 Reverse transcriptase domain-containing protein1.6e-4043.9Show/hide
Query:  ARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-------------------------------------
        A KE  + + T    K EAST+ AK  ++ DEK SN PILRYVPLSRRKKGESPF E  + +K                                     
Subjt:  ARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-------------------------------------

Query:  ----------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADTNHITVEEVDDSKEKESVDQRTFVFRRIRPPVARALVFQRLSVNEAE
                        KKLL+EG+ +P +RKGLGYKSPEP+RITR+GK KV D+NHITV+EVD  +EKE  +QRT  F RI P VARA VF+RLS+ EAE
Subjt:  ----------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADTNHITVEEVDDSKEKESVDQRTFVFRRIRPPVARALVFQRLSVNEAE

Query:  EESAQPTNSSTRPSVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNM
         +  Q T++  + S F+RL++   +E+    T   T+PSAF+RL++
Subjt:  EESAQPTNSSTRPSVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGATCCCAAGAAAAATATGTTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGAAAAGAGTCCCG
CCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTCCTTTGTCCTC
CACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGAT
GATGTCCCTACTAGCTCCTCGGGAACGCCCCATGCAGATGCAAGAAAAGAAGCTGTTGAAGATATGGATACTTCCGACCTGAAAAAGGGTGAAGCATCTACAAGCCTTGC
GAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGATACGTCCCCTTATCTCGACGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCAGAAA
GCATAAAGAAGAAACTTCTAAAGGAAGGTTATAGTCTGCCTACAACAAGAAAAGGGCTTGGATATAAGTCGCCAGAGCCAGTTCGCATAACAAGAAGAGGGAAGGCGAAA
GTGGCAGATACAAATCATATAACAGTAGAAGAGGTTGATGACTCAAAAGAAAAAGAAAGTGTCGACCAACGAACTTTTGTTTTTAGGCGCATCAGGCCACCAGTTGCCCG
TGCTTTAGTCTTTCAGAGATTAAGTGTTAATGAAGCGGAAGAAGAAAGCGCACAACCTACCAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTG
GGGATGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATTGGGGAAGGGGAGAGTACATTTTCAACTTCGGATGTG
ACTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGATCCCAAGAAAAATATGTTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGAAAAGAGTCCCG
CCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTCCTTTGTCCTC
CACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGAT
GATGTCCCTACTAGCTCCTCGGGAACGCCCCATGCAGATGCAAGAAAAGAAGCTGTTGAAGATATGGATACTTCCGACCTGAAAAAGGGTGAAGCATCTACAAGCCTTGC
GAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGATACGTCCCCTTATCTCGACGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCAGAAA
GCATAAAGAAGAAACTTCTAAAGGAAGGTTATAGTCTGCCTACAACAAGAAAAGGGCTTGGATATAAGTCGCCAGAGCCAGTTCGCATAACAAGAAGAGGGAAGGCGAAA
GTGGCAGATACAAATCATATAACAGTAGAAGAGGTTGATGACTCAAAAGAAAAAGAAAGTGTCGACCAACGAACTTTTGTTTTTAGGCGCATCAGGCCACCAGTTGCCCG
TGCTTTAGTCTTTCAGAGATTAAGTGTTAATGAAGCGGAAGAAGAAAGCGCACAACCTACCAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTG
GGGATGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATTGGGGAAGGGGAGAGTACATTTTCAACTTCGGATGTG
ACTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGATGA
Protein sequenceShow/hide protein sequence
MKGSQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFLCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDD
DVPTSSSGTPHADARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAK
VADTNHITVEEVDDSKEKESVDQRTFVFRRIRPPVARALVFQRLSVNEAEEESAQPTNSSTRPSVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNMPIGEGESTFSTSDV
TRPSVFQRLSVTTR