CuGenDBv2

Gene ID	Spg028129
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein PALE CRESS, chloroplastic
Genome location	scaffold2:45484890..45487758
RNA-Seq Expression	Spg028129
Synteny	Spg028129
Gene Ontology terms	GO:0009658 - chloroplast organization (biological process) GO:0009965 - leaf morphogenesis (biological process) GO:0010239 - chloroplast mRNA processing (biological process) GO:0042254 - ribosome biogenesis (biological process) GO:0071482 - cellular response to light stimulus (biological process) GO:0009501 - amyloplast (cellular component) GO:0009509 - chromoplast (cellular component) GO:0009513 - etioplast (cellular component) GO:0009537 - proplastid (cellular component) GO:0042644 - chloroplast nucleoid (cellular component) GO:0019843 - rRNA binding (molecular function) GO:0043621 - protein self-association (molecular function)
InterPro domains	IPR034563 - Protein PALE CRESS

Homology

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GenBank top hits

e value

%identity

Alignment

CAB4322055.1 unnamed protein product [Prunus armeniaca]

1.5e-19

69.05

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Query:  MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDVCCLVERDLASCLIMNPNQIGKELL
        MRLKG+PEEDVRKARKL+SSFIRAAEEVEEKIEEA EKGELTELVL+VIWN+LDLA RD     E+D+   L +   ++  E+L
Subjt:  MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDVCCLVERDLASCLIMNPNQIGKELL

MCH86628.1 PAC [Trifolium medium]

4.8e-21

67.82

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Query:  MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDVCCLVERDLASCLIMNPNQIGKELLVFF
        MRLKG+PEEDVRKARKL+SSFIRAAEEVEEKIEEA E+GELTELVL+VIWN+LDLA RDV   +  D  S +  + N I   ++V F
Subjt:  MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDVCCLVERDLASCLIMNPNQIGKELLVFF

MCH99641.1 PAC [Trifolium medium]

4.8e-21

67.82

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Query:  MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDVCCLVERDLASCLIMNPNQIGKELLVFF
        MRLKG+PEEDVRKARKL+SSFIRAAEEVEEKIEEA E+GELTELVL+VIWN+LDLA RDV   +  D  S +  + N I   ++V F
Subjt:  MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDVCCLVERDLASCLIMNPNQIGKELLVFF

VVA14020.1 PREDICTED: PALE CRESS [Prunus dulcis]

1.5e-19

69.05

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Query:  MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDVCCLVERDLASCLIMNPNQIGKELL
        MRLKG+PEEDVRKARKL+SSFIRAAEEVEEKIEEA EKGELTELVL+VIWN+LDLA RD     E+D+   L +   ++  E+L
Subjt:  MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDVCCLVERDLASCLIMNPNQIGKELL

XP_034227598.1 protein PALE CRESS, chloroplastic isoform X1 [Prunus dulcis]

1.5e-19

69.05

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Query:  MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDVCCLVERDLASCLIMNPNQIGKELL
        MRLKG+PEEDVRKARKL+SSFIRAAEEVEEKIEEA EKGELTELVL+VIWN+LDLA RD     E+D+   L +   ++  E+L
Subjt:  MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDVCCLVERDLASCLIMNPNQIGKELL

TrEMBL top hits

e value

%identity

Alignment

A0A392MIU4 PAC (Fragment)

2.3e-21

67.82

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Query:  MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDVCCLVERDLASCLIMNPNQIGKELLVFF
        MRLKG+PEEDVRKARKL+SSFIRAAEEVEEKIEEA E+GELTELVL+VIWN+LDLA RDV   +  D  S +  + N I   ++V F
Subjt:  MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDVCCLVERDLASCLIMNPNQIGKELLVFF

A0A392NJP7 PAC

2.3e-21

67.82

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Query:  MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDVCCLVERDLASCLIMNPNQIGKELLVFF
        MRLKG+PEEDVRKARKL+SSFIRAAEEVEEKIEEA E+GELTELVL+VIWN+LDLA RDV   +  D  S +  + N I   ++V F
Subjt:  MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDVCCLVERDLASCLIMNPNQIGKELLVFF

A0A4Y1S0U1 Pale cress protein

7.4e-20

69.05

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Query:  MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDVCCLVERDLASCLIMNPNQIGKELL
        MRLKG+PEEDVRKARKL+SSFIRAAEEVEEKIEEA EKGELTELVL+VIWN+LDLA RD     E+D+   L +   ++  E+L
Subjt:  MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDVCCLVERDLASCLIMNPNQIGKELL

A0A5E4EGC0 PREDICTED: PALE CRESS

7.4e-20

69.05

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Query:  MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDVCCLVERDLASCLIMNPNQIGKELL
        MRLKG+PEEDVRKARKL+SSFIRAAEEVEEKIEEA EKGELTELVL+VIWN+LDLA RD     E+D+   L +   ++  E+L
Subjt:  MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDVCCLVERDLASCLIMNPNQIGKELL

A0A5E4EGD7 PREDICTED: PALE CRESS

7.4e-20

69.05

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Query:  MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDVCCLVERDLASCLIMNPNQIGKELL
        MRLKG+PEEDVRKARKL+SSFIRAAEEVEEKIEEA EKGELTELVL+VIWN+LDLA RD     E+D+   L +   ++  E+L
Subjt:  MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDVCCLVERDLASCLIMNPNQIGKELL

SwissProt top hits

e value

%identity

Alignment

Q39089 Protein PALE CRESS, chloroplastic

7.9e-19

82.76

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Query:  RLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRD
        RLK FPE+D+RKARKLVSSFIRAAEEVEE+IEEA EKGEL ELVL++IWN+LDLA RD
Subjt:  RLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRD

Arabidopsis top hits

e value

%identity

Alignment

AT2G48120.1 pale cress protein (PAC)

5.6e-20

82.76

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Query:  RLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRD
        RLK FPE+D+RKARKLVSSFIRAAEEVEE+IEEA EKGEL ELVL++IWN+LDLA RD
Subjt:  RLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRD

AT2G48120.2 pale cress protein (PAC)

5.6e-20

82.76

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Query:  RLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRD
        RLK FPE+D+RKARKLVSSFIRAAEEVEE+IEEA EKGEL ELVL++IWN+LDLA RD
Subjt:  RLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRD

Sequences

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CDS sequence

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ATGCGTCTGAAAGGATTTCCAGAAGAAGATGTCAGAAAAGCTCGAAAACTGGTTTCAAGCTTTATTAGAGCTGCTGAAGAAGTTGAAGAGAAAATTGAGGAAGCTGTTGA
GAAAGGAGAACTAACAGAGCTTGTTCTACTAGTGATATGGAATCAACTTGATTTAGCAAGTCGTGATGTATGTTGTTTGGTTGAGAGAGATTTAGCTTCTTGCCTCATCA
TGAACCCAAACCAGATTGGAAAGGAACTTCTTGTGTTCTTCAGGAAACCAAAAGGTGAATTATCTACCCATGGAGACTACCCTAATATGATTGTTGGTTTGCTGAGGATT
TCAGTTTTATTCCACACTATGGTTGGATTTCAGATTGTGAACTTTTGCAATGCAGTATAA

mRNA sequence

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Protein sequence

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MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDVCCLVERDLASCLIMNPNQIGKELLVFFRKPKGELSTHGDYPNMIVGLLRI
SVLFHTMVGFQIVNFCNAV

Spg028129 (gene) of Sponge gourd (cylindrica) v1 genome