; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028137 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028137
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold2:41840828..41843230
RNA-Seq ExpressionSpg028137
SyntenySpg028137
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025495.1 retrotransposon protein [Cucumis melo var. makuwa]7.1e-0537.1Show/hide
Query:  SHSAAK-LLNKPFPHYEELAFVFGKDRASGS--------GWNVPAKQAAENVPVDAEGDCNFQETQDYSVPIPPVENLATDVEFEDVPITPTNRPSS---
        SH  AK LLNK F HY+EL++VFGKDRA+G         G N PA   A   P DA  D +F          PP+ +L  ++  +D+  T T R S    
Subjt:  SHSAAK-LLNKPFPHYEELAFVFGKDRASGS--------GWNVPAKQAAENVPVDAEGDCNFQETQDYSVPIPPVENLATDVEFEDVPITPTNRPSS---

Query:  -SQGRKRSRESYEAEALEIMRQAV
         S G KR    +  ++ +I+R A+
Subjt:  -SQGRKRSRESYEAEALEIMRQAV

KAA0031555.1 retrotransposon protein [Cucumis melo var. makuwa]9.2e-0537.07Show/hide
Query:  MQSHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQDYSVPIPPVENLATDVEFEDVPITPTNRPS----SSQGRK
        ++SH AAK LLNKPFP+Y+EL +VFG+DRA+G      A+  A+    +  G  +  +  D +   PPV +   D+  +DV  +  +R S     S G K
Subjt:  MQSHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQDYSVPIPPVENLATDVEFEDVPITPTNRPS----SSQGRK

Query:  RSRES---YEAEALEI
        R R S   +E EA+ +
Subjt:  RSRES---YEAEALEI

KAA0038065.1 retrotransposon protein [Cucumis melo var. makuwa]9.2e-0537.07Show/hide
Query:  MQSHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQDYSVPIPPVENLATDVEFEDVPITPTNRPS----SSQGRK
        ++SH AAK LLNKPFP+Y+EL +VFG+DRA+G      A+  A+    +  G  +  +  D +   PPV +   D+  +DV  +  +R S     S G K
Subjt:  MQSHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQDYSVPIPPVENLATDVEFEDVPITPTNRPS----SSQGRK

Query:  RSRES---YEAEALEI
        R R S   +E EA+ +
Subjt:  RSRES---YEAEALEI

KAA0049246.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-0535.71Show/hide
Query:  SHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQDYSVPIPPVENLATDVEFEDVPITPTNRPSSSQGRKRSRESY
        SH AAK LLNK F HY+EL++VFGKDRA+G G    A   + + P    G  +     D+     P  N++ D   E      + R + S G KR R  +
Subjt:  SHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQDYSVPIPPVENLATDVEFEDVPITPTNRPSSSQGRKRSRESY

Query:  EAEALEIMRQAV
          ++ +I+R A+
Subjt:  EAEALEIMRQAV

XP_022158565.1 uncharacterized protein LOC111025018 [Momordica charantia]1.6e-1239.19Show/hide
Query:  MQSHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQDYSVPIPPVENLATDVEFEDVPITPTNRP---SSSQGRKR
        ++SH  AK L NKP PHY++L   FGKDRA+G+  + P   A+      AE D +F E QD+ +P PP+ N   D   ED+P TPT++P   +SS G KR
Subjt:  MQSHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQDYSVPIPPVENLATDVEFEDVPITPTNRP---SSSQGRKR

Query:  SRESYEAEALEIMRQAVSIQEIQFAKKNRGKAGIPQKCEKAKMKRDRI
         R  Y +E ++++R  + +Q     K     A  P K E+ K+ R +I
Subjt:  SRESYEAEALEIMRQAVSIQEIQFAKKNRGKAGIPQKCEKAKMKRDRI

TrEMBL top hitse value%identityAlignment
A0A5A7T9G6 Retrotransposon protein4.5e-0537.07Show/hide
Query:  MQSHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQDYSVPIPPVENLATDVEFEDVPITPTNRPS----SSQGRK
        ++SH AAK LLNKPFP+Y+EL +VFG+DRA+G      A+  A+    +  G  +  +  D +   PPV +   D+  +DV  +  +R S     S G K
Subjt:  MQSHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQDYSVPIPPVENLATDVEFEDVPITPTNRPS----SSQGRK

Query:  RSRES---YEAEALEI
        R R S   +E EA+ +
Subjt:  RSRES---YEAEALEI

A0A5A7TRV1 Retrotransposon protein5.8e-0537.07Show/hide
Query:  MQSHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQDYSVPIPPVENLATDVEFEDVPITPTNRPS----SSQGRK
        ++SH AAK LLNKPFP+Y+EL +VFG+DRA+G      A+  A+    +  G  +  +  D +   PPV +   D+  +DV  +  +R S     S G K
Subjt:  MQSHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQDYSVPIPPVENLATDVEFEDVPITPTNRPS----SSQGRK

Query:  RSRES---YEAEALEI
        R R S   +E EA+ +
Subjt:  RSRES---YEAEALEI

A0A5A7U4P8 Retrotransposon protein9.0e-0635.71Show/hide
Query:  SHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQDYSVPIPPVENLATDVEFEDVPITPTNRPSSSQGRKRSRESY
        SH AAK LLNK F HY+EL++VFGKDRA+G G    A   + + P    G  +     D+     P  N++ D   E      + R + S G KR R  +
Subjt:  SHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQDYSVPIPPVENLATDVEFEDVPITPTNRPSSSQGRKRSRESY

Query:  EAEALEIMRQAV
          ++ +I+R A+
Subjt:  EAEALEIMRQAV

A0A5D3CWL2 Retrotransposon protein4.5e-0537.07Show/hide
Query:  MQSHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQDYSVPIPPVENLATDVEFEDVPITPTNRPS----SSQGRK
        ++SH AAK LLNKPFP+Y+EL +VFG+DRA+G      A+  A+    +  G  +  +  D +   PPV +   D+  +DV  +  +R S     S G K
Subjt:  MQSHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQDYSVPIPPVENLATDVEFEDVPITPTNRPS----SSQGRK

Query:  RSRES---YEAEALEI
        R R S   +E EA+ +
Subjt:  RSRES---YEAEALEI

A0A6J1DW73 uncharacterized protein LOC1110250187.6e-1339.19Show/hide
Query:  MQSHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQDYSVPIPPVENLATDVEFEDVPITPTNRP---SSSQGRKR
        ++SH  AK L NKP PHY++L   FGKDRA+G+  + P   A+      AE D +F E QD+ +P PP+ N   D   ED+P TPT++P   +SS G KR
Subjt:  MQSHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQDYSVPIPPVENLATDVEFEDVPITPTNRP---SSSQGRKR

Query:  SRESYEAEALEIMRQAVSIQEIQFAKKNRGKAGIPQKCEKAKMKRDRI
         R  Y +E ++++R  + +Q     K     A  P K E+ K+ R +I
Subjt:  SRESYEAEALEIMRQAVSIQEIQFAKKNRGKAGIPQKCEKAKMKRDRI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTCCCACTCAGCTGCAAAGCTACTGAACAAGCCATTTCCTCACTACGAGGAACTCGCCTTCGTGTTTGGCAAGGATCGGGCTAGTGGATCGGGGTGGAATGTACC
AGCGAAACAAGCTGCAGAAAATGTTCCAGTGGACGCGGAGGGAGATTGCAACTTCCAGGAGACACAGGATTATTCTGTCCCCATCCCTCCAGTAGAAAATTTGGCCACGG
ATGTCGAGTTTGAGGACGTCCCCATAACGCCCACGAACCGACCGAGCTCCTCGCAGGGACGGAAGAGGAGTAGAGAATCATATGAAGCAGAAGCCCTGGAAATAATGAGG
CAGGCAGTCAGCATACAGGAGATACAATTCGCAAAAAAAAACAGAGGAAAAGCTGGAATTCCCCAGAAATGCGAGAAGGCAAAAATGAAACGCGACCGCATTTCTGGAAA
AACAGAGGCCGTTCCGAGTCGCACGCGGGTCGTTGTTGACGAGTCTTCTTCGCACCTAACAGAAAGAACCTTTCGTCGTCGAAGGAAGGAACAAAGACGAAAGAAGGAGC
AACAAGAGTTGAGCGCACGGGAATTTCTAGAGGAAGCATCTTACATTCAAGAGTTTCCAATGGATCCTCCTGGAGTCGAGCCTCAAGTTGATCCACAAGTTCGTGGAAGG
GAGCAGAATGACAGGAGAATTCCTCCTGTTCCTCCAGTTCCACCAGTGCCACAACAAGAAAACCCAATTTACATTGCTGAAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGTCCCACTCAGCTGCAAAGCTACTGAACAAGCCATTTCCTCACTACGAGGAACTCGCCTTCGTGTTTGGCAAGGATCGGGCTAGTGGATCGGGGTGGAATGTACC
AGCGAAACAAGCTGCAGAAAATGTTCCAGTGGACGCGGAGGGAGATTGCAACTTCCAGGAGACACAGGATTATTCTGTCCCCATCCCTCCAGTAGAAAATTTGGCCACGG
ATGTCGAGTTTGAGGACGTCCCCATAACGCCCACGAACCGACCGAGCTCCTCGCAGGGACGGAAGAGGAGTAGAGAATCATATGAAGCAGAAGCCCTGGAAATAATGAGG
CAGGCAGTCAGCATACAGGAGATACAATTCGCAAAAAAAAACAGAGGAAAAGCTGGAATTCCCCAGAAATGCGAGAAGGCAAAAATGAAACGCGACCGCATTTCTGGAAA
AACAGAGGCCGTTCCGAGTCGCACGCGGGTCGTTGTTGACGAGTCTTCTTCGCACCTAACAGAAAGAACCTTTCGTCGTCGAAGGAAGGAACAAAGACGAAAGAAGGAGC
AACAAGAGTTGAGCGCACGGGAATTTCTAGAGGAAGCATCTTACATTCAAGAGTTTCCAATGGATCCTCCTGGAGTCGAGCCTCAAGTTGATCCACAAGTTCGTGGAAGG
GAGCAGAATGACAGGAGAATTCCTCCTGTTCCTCCAGTTCCACCAGTGCCACAACAAGAAAACCCAATTTACATTGCTGAAGATTGA
Protein sequenceShow/hide protein sequence
MQSHSAAKLLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQDYSVPIPPVENLATDVEFEDVPITPTNRPSSSQGRKRSRESYEAEALEIMR
QAVSIQEIQFAKKNRGKAGIPQKCEKAKMKRDRISGKTEAVPSRTRVVVDESSSHLTERTFRRRRKEQRRKKEQQELSAREFLEEASYIQEFPMDPPGVEPQVDPQVRGR
EQNDRRIPPVPPVPPVPQQENPIYIAED