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Spg028169 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028169
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold2:46414486..46422994
RNA-Seq ExpressionSpg028169
SyntenySpg028169
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]6.1e-0950Show/hide
Query:  LGTRFSSPPNTTMPTYSQSKNANLEGICRLGYILLLTLSVLCDNDAVVSAGRAPLHRRTSKRWLYWACPTQRSLVM----LVEIELPVPDTLPTSAESSR
        L  R S+  N  MP      +   E I +     L TLSVL DNDAVVSAG+APL +R   RW     PT     M    LVEIELPVPD LPTSAESSR
Subjt:  LGTRFSSPPNTTMPTYSQSKNANLEGICRLGYILLLTLSVLCDNDAVVSAGRAPLHRRTSKRWLYWACPTQRSLVM----LVEIELPVPDTLPTSAESSR

Query:  TSSN
        ++S+
Subjt:  TSSN

KAA0041324.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.8e-1159.72Show/hide
Query:  KNANLEGICRLGYILLLTLSVLCDNDAVV------------SAGRAPLHRRTSKRWLYWACPTQRSLVMLVE
        K ++L  +   GYI LLTLSVL DN+ VV            SAGR PLHRRTSKRWLYWACPTQR+ VMLV+
Subjt:  KNANLEGICRLGYILLLTLSVLCDNDAVV------------SAGRAPLHRRTSKRWLYWACPTQRSLVMLVE

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]3.9e-1654.39Show/hide
Query:  LLTLSVLCDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRSLVML----------VEIELPVPDTLPTSAESSRTSSNRKRSNLLVRTPP
        L TLSVL DNDAVVSAG            RAPLHRRTSKRWLYWACPT R  VML          VEIEL VPDTLPTSAESS ++S   RS  +VR   
Subjt:  LLTLSVLCDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRSLVML----------VEIELPVPDTLPTSAESSRTSSNRKRSNLLVRTPP

Query:  IGYTGISLRLLEAG
        + +  +  R    G
Subjt:  IGYTGISLRLLEAG

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]3.9e-1654.39Show/hide
Query:  LLTLSVLCDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRSLVML----------VEIELPVPDTLPTSAESSRTSSNRKRSNLLVRTPP
        L TLSVL DNDAVVSAG            RAPLHRRTSKRWLYWACPT R  VML          VEIEL VPDTLPTSAESS ++S   RS  +VR   
Subjt:  LLTLSVLCDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRSLVML----------VEIELPVPDTLPTSAESSRTSSNRKRSNLLVRTPP

Query:  IGYTGISLRLLEAG
        + +  +  R    G
Subjt:  IGYTGISLRLLEAG

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]6.1e-0950Show/hide
Query:  LGTRFSSPPNTTMPTYSQSKNANLEGICRLGYILLLTLSVLCDNDAVVSAGRAPLHRRTSKRWLYWACPTQRSLVM----LVEIELPVPDTLPTSAESSR
        L  R S+  N  MP      +   E I +     L TLSVL DNDAVVSAG+APL +R   RW     PT     M    LVEIELPVPD LPTSAESSR
Subjt:  LGTRFSSPPNTTMPTYSQSKNANLEGICRLGYILLLTLSVLCDNDAVVSAGRAPLHRRTSKRWLYWACPTQRSLVM----LVEIELPVPDTLPTSAESSR

Query:  TSSN
        ++S+
Subjt:  TSSN

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase2.9e-0950Show/hide
Query:  LGTRFSSPPNTTMPTYSQSKNANLEGICRLGYILLLTLSVLCDNDAVVSAGRAPLHRRTSKRWLYWACPTQRSLVM----LVEIELPVPDTLPTSAESSR
        L  R S+  N  MP      +   E I +     L TLSVL DNDAVVSAG+APL +R   RW     PT     M    LVEIELPVPD LPTSAESSR
Subjt:  LGTRFSSPPNTTMPTYSQSKNANLEGICRLGYILLLTLSVLCDNDAVVSAGRAPLHRRTSKRWLYWACPTQRSLVM----LVEIELPVPDTLPTSAESSR

Query:  TSSN
        ++S+
Subjt:  TSSN

A0A5A7TCY8 DNA/RNA polymerases superfamily protein1.8e-1159.72Show/hide
Query:  KNANLEGICRLGYILLLTLSVLCDNDAVV------------SAGRAPLHRRTSKRWLYWACPTQRSLVMLVE
        K ++L  +   GYI LLTLSVL DN+ VV            SAGR PLHRRTSKRWLYWACPTQR+ VMLV+
Subjt:  KNANLEGICRLGYILLLTLSVLCDNDAVV------------SAGRAPLHRRTSKRWLYWACPTQRSLVMLVE

A0A5A7VGQ5 Uncharacterized protein1.9e-1654.39Show/hide
Query:  LLTLSVLCDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRSLVML----------VEIELPVPDTLPTSAESSRTSSNRKRSNLLVRTPP
        L TLSVL DNDAVVSAG            RAPLHRRTSKRWLYWACPT R  VML          VEIEL VPDTLPTSAESS ++S   RS  +VR   
Subjt:  LLTLSVLCDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRSLVML----------VEIELPVPDTLPTSAESSRTSSNRKRSNLLVRTPP

Query:  IGYTGISLRLLEAG
        + +  +  R    G
Subjt:  IGYTGISLRLLEAG

A0A5D3BG85 Uncharacterized protein1.9e-1654.39Show/hide
Query:  LLTLSVLCDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRSLVML----------VEIELPVPDTLPTSAESSRTSSNRKRSNLLVRTPP
        L TLSVL DNDAVVSAG            RAPLHRRTSKRWLYWACPT R  VML          VEIEL VPDTLPTSAESS ++S   RS  +VR   
Subjt:  LLTLSVLCDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRSLVML----------VEIELPVPDTLPTSAESSRTSSNRKRSNLLVRTPP

Query:  IGYTGISLRLLEAG
        + +  +  R    G
Subjt:  IGYTGISLRLLEAG

A0A5D3BTP3 Reverse transcriptase2.9e-0950Show/hide
Query:  LGTRFSSPPNTTMPTYSQSKNANLEGICRLGYILLLTLSVLCDNDAVVSAGRAPLHRRTSKRWLYWACPTQRSLVM----LVEIELPVPDTLPTSAESSR
        L  R S+  N  MP      +   E I +     L TLSVL DNDAVVSAG+APL +R   RW     PT     M    LVEIELPVPD LPTSAESSR
Subjt:  LGTRFSSPPNTTMPTYSQSKNANLEGICRLGYILLLTLSVLCDNDAVVSAGRAPLHRRTSKRWLYWACPTQRSLVM----LVEIELPVPDTLPTSAESSR

Query:  TSSN
        ++S+
Subjt:  TSSN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCGACTCCCAATCGCCACTCCAAACGTTCAGAACTTCAGAGACCCACGTCGCCAAACACCCAAAACGCCACTACTCGCGCCCCCAAACCGCCGCTGCACGCCGGA
ACTCACGTGCGGATTGCTGAAACGACGTCGAAAAAACAACCGACTCGAGGACAATCTTTGCACAGGCGACACCGTCGGTGAAAGAGAGGGAAGAGAGAGAGATTGGGGAG
AGAAACAAAACGAGAAACGCCGAAAGAATAAGAAAACGGAACTCACCCGCTGCAGCCGTGCGTTTGATGCTCACGGGTTCGACGGAAAACGCCAGCCGCCGCAACCATCA
CACAGCTGGCCAAAGAAGACGCCACCCACTGGAGACTCGCCGCCGGAGACACAGGATGGAGGGAGCGAAAACCTGCTTCCTAGAAGAGCTCTGGGCACTCGATTCTCATC
TCCTCCAAATACAACTATGCCCACCTATTCGCAAAGTAAGAATGCAAACCTAGAAGGAATATGTCGACTTGGTTATATTCTGTTGTTGACGTTGAGTGTACTCTGTGACA
ACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGTTTGGTCATGTTAGTAGAGATC
GAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAATCGAAAACGTAGCAACCTTCTTGTGCGAACACCACCAATTGGTTACACTGG
TATATCTCTGAGACTACTGGAGGCAGGAGATTGGGAGGCTATTTATAGGCCCGGATTTGGGACAGCGTCGCGACGCTGTGACGTCATGCGCTTGTCCGCCAAGAAATGGG
ACAGCGTCGCGACGCTGTCCCCACAGCGTCTCGACGCTATGCGAATTCCAGAACAGTCCACACGGATTTGGGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTCGACTCCCAATCGCCACTCCAAACGTTCAGAACTTCAGAGACCCACGTCGCCAAACACCCAAAACGCCACTACTCGCGCCCCCAAACCGCCGCTGCACGCCGGA
ACTCACGTGCGGATTGCTGAAACGACGTCGAAAAAACAACCGACTCGAGGACAATCTTTGCACAGGCGACACCGTCGGTGAAAGAGAGGGAAGAGAGAGAGATTGGGGAG
AGAAACAAAACGAGAAACGCCGAAAGAATAAGAAAACGGAACTCACCCGCTGCAGCCGTGCGTTTGATGCTCACGGGTTCGACGGAAAACGCCAGCCGCCGCAACCATCA
CACAGCTGGCCAAAGAAGACGCCACCCACTGGAGACTCGCCGCCGGAGACACAGGATGGAGGGAGCGAAAACCTGCTTCCTAGAAGAGCTCTGGGCACTCGATTCTCATC
TCCTCCAAATACAACTATGCCCACCTATTCGCAAAGTAAGAATGCAAACCTAGAAGGAATATGTCGACTTGGTTATATTCTGTTGTTGACGTTGAGTGTACTCTGTGACA
ACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGTTTGGTCATGTTAGTAGAGATC
GAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAATCGAAAACGTAGCAACCTTCTTGTGCGAACACCACCAATTGGTTACACTGG
TATATCTCTGAGACTACTGGAGGCAGGAGATTGGGAGGCTATTTATAGGCCCGGATTTGGGACAGCGTCGCGACGCTGTGACGTCATGCGCTTGTCCGCCAAGAAATGGG
ACAGCGTCGCGACGCTGTCCCCACAGCGTCTCGACGCTATGCGAATTCCAGAACAGTCCACACGGATTTGGGCTTGA
Protein sequenceShow/hide protein sequence
MIRLPIATPNVQNFRDPRRQTPKTPLLAPPNRRCTPELTCGLLKRRRKNNRLEDNLCTGDTVGEREGRERDWGEKQNEKRRKNKKTELTRCSRAFDAHGFDGKRQPPQPS
HSWPKKTPPTGDSPPETQDGGSENLLPRRALGTRFSSPPNTTMPTYSQSKNANLEGICRLGYILLLTLSVLCDNDAVVSAGRAPLHRRTSKRWLYWACPTQRSLVMLVEI
ELPVPDTLPTSAESSRTSSNRKRSNLLVRTPPIGYTGISLRLLEAGDWEAIYRPGFGTASRRCDVMRLSAKKWDSVATLSPQRLDAMRIPEQSTRIWA