; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028178 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028178
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSOSS complex subunit B homolog
Genome locationscaffold2:43677672..43678412
RNA-Seq ExpressionSpg028178
SyntenySpg028178
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0010212 - response to ionizing radiation (biological process)
GO:0070876 - SOSS complex (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135609.1 SOSS complex subunit B homolog [Cucumis sativus]3.2e-5692.56Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
        MMI LKDLVPAAQN VNTQFIVLEKG TTMEGQNK CQSLVADETAAVHFQLWG+ECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEF MV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTDSKK
        FVETPNMSEIHWVPDT +S K
Subjt:  FVETPNMSEIHWVPDTTDSKK
XP_022961520.1 SOSS complex subunit B homolog [Cucurbita moschata]5.3e-5995.87Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
        MMISLKDLVPAAQNNVNTQFIVLEKG TTMEGQNK CQSLVADETAAVHFQLWGEECDVVEPSDI+RLTNGIFSYSRN+NLVLRAGKRGKIEKVGEFNMV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTDSKK
        FVETPNMSEIHWVPDTT+SKK
Subjt:  FVETPNMSEIHWVPDTTDSKK
XP_022968811.1 SOSS complex subunit B homolog [Cucurbita maxima]4.5e-5894.21Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
        MMISLKDLVPAAQNNVNTQFIVLEKG TTM+GQNK CQSLVADETAAVHFQLWGEECDVVEPSDI+RL NGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTDSKK
        FVETPNMSEIHWVPDT++SKK
Subjt:  FVETPNMSEIHWVPDTTDSKK
XP_023515959.1 SOSS complex subunit B homolog [Cucurbita pepo subsp. pepo]1.2e-5894.21Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
        MMISLKDLVPAAQNNVNTQFIVL+KG TT+EGQNK CQSLVADETAAVHFQLWGEECDVVEPSDI+RLTNGIFSYSRNNNLVLRAGKRGK+EKVGEFNMV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTDSKK
        FVETPNMSEIHWVPDTT+SKK
Subjt:  FVETPNMSEIHWVPDTTDSKK
XP_038878334.1 SOSS complex subunit B homolog [Benincasa hispida]1.3e-5794.21Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
        MMI+LKDLVPAAQNNVNTQFIVLEKG T MEGQNKACQSLVADETAAVHFQLWG+ECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEF MV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTDSKK
        FVETPNMSEIHWVPDTT+S K
Subjt:  FVETPNMSEIHWVPDTTDSKK
TrEMBL top hitse value%identityAlignment
A0A0A0LW03 Uncharacterized protein1.6e-5692.56Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
        MMI LKDLVPAAQN VNTQFIVLEKG TTMEGQNK CQSLVADETAAVHFQLWG+ECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEF MV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTDSKK
        FVETPNMSEIHWVPDT +S K
Subjt:  FVETPNMSEIHWVPDTTDSKK
A0A1S3BPN4 SOSS complex subunit B homolog1.6e-5692.56Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
        MMI LKDLVPAAQN VNTQFIVLEKG TTMEGQNK CQSLVADETAAVHFQLWG+ECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEF MV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTDSKK
        FVETPNMSEIHWVPDT +S K
Subjt:  FVETPNMSEIHWVPDTTDSKK
A0A5D3CIR3 SOSS complex subunit B-like protein1.6e-5692.56Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
        MMI LKDLVPAAQN VNTQFIVLEKG TTMEGQNK CQSLVADETAAVHFQLWG+ECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEF MV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTDSKK
        FVETPNMSEIHWVPDT +S K
Subjt:  FVETPNMSEIHWVPDTTDSKK
A0A6J1HAL0 SOSS complex subunit B homolog2.6e-5995.87Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
        MMISLKDLVPAAQNNVNTQFIVLEKG TTMEGQNK CQSLVADETAAVHFQLWGEECDVVEPSDI+RLTNGIFSYSRN+NLVLRAGKRGKIEKVGEFNMV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTDSKK
        FVETPNMSEIHWVPDTT+SKK
Subjt:  FVETPNMSEIHWVPDTTDSKK
A0A6J1HZ66 SOSS complex subunit B homolog2.2e-5894.21Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
        MMISLKDLVPAAQNNVNTQFIVLEKG TTM+GQNK CQSLVADETAAVHFQLWGEECDVVEPSDI+RL NGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTDSKK
        FVETPNMSEIHWVPDT++SKK
Subjt:  FVETPNMSEIHWVPDTTDSKK
SwissProt top hitse value%identityAlignment
A5D7P8 SOSS complex subunit B21.0e-1240.57Show/hide
Query:  LKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSL-VADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMVFVE
        +KD+ P  + N+N  FIVLE G+ T        +S  VAD+T ++   +W E   +++P DIIRLT G  S  +   L L  G+ G+++K+GEF MV+ E
Subjt:  LKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSL-VADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMVFVE

Query:  TPNMSE
         PN SE
Subjt:  TPNMSE
A6QLK2 SOSS complex subunit B11.3e-1238.68Show/hide
Query:  LKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSL-VADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMVFVE
        +KD+ P  + N+N  FIVLE G+ T        ++  VAD+T +++  +W +  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E
Subjt:  LKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSL-VADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMVFVE

Query:  TPNMSE
         PN SE
Subjt:  TPNMSE
Q54X41 SOSS complex subunit B homolog3.2e-1439.64Show/hide
Query:  MISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMVF
        +I + ++ P ++ N+N  FIVL+KG  T + +    Q LVAD TA+++  +W    + ++P DI+RL  G +S      L L  GK G IEK+GEF   F
Subjt:  MISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIHW
        VE PN+S   W
Subjt:  VETPNMSEIHW
Q96AH0 SOSS complex subunit B27.8e-1339.45Show/hide
Query:  MISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSL-VADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
        +I ++D+ P  + N+N  FIVLE G+ T        +S  VAD+T ++   +W E   +++P DIIRLT G  S  +   L L  G+ G+++K+GEF MV
Subjt:  MISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSL-VADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSE
        + E PN SE
Subjt:  FVETPNMSE
Q9BQ15 SOSS complex subunit B11.3e-1238.68Show/hide
Query:  LKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSL-VADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMVFVE
        +KD+ P  + N+N  FIVLE G+ T        ++  VAD+T +++  +W +  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E
Subjt:  LKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSL-VADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMVFVE

Query:  TPNMSE
         PN SE
Subjt:  TPNMSE
Arabidopsis top hitse value%identityAlignment
AT5G63690.1 Nucleic acid-binding, OB-fold-like protein8.2e-4258.59Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
        M + LKD+VPAAQNN++T+FI+L+K K++       C +L ADETAAVH QLWG+ECD  E  DI++LTNGIFSY RN+ L+LRAGKRGK+EK+GEF + 
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTDSKKLRRTGSI
        FVETPN+SEI W+PD  + K+  ++G +
Subjt:  FVETPNMSEIHWVPDTTDSKKLRRTGSI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATATCTCTCAAGGACTTGGTGCCAGCAGCCCAGAACAATGTGAATACACAGTTCATAGTTTTGGAGAAAGGCAAGACAACAATGGAAGGACAAAACAAGGCATG
CCAATCACTGGTGGCCGACGAAACAGCAGCGGTTCACTTCCAGCTATGGGGAGAGGAGTGCGACGTCGTCGAGCCGAGCGACATTATACGCTTGACGAATGGGATATTCT
CCTACAGTCGAAACAATAATCTGGTGCTGAGGGCAGGGAAGAGAGGGAAGATAGAGAAGGTGGGAGAGTTCAACATGGTGTTTGTAGAGACACCAAATATGAGCGAGATC
CATTGGGTTCCCGACACGACTGACTCGAAGAAATTGAGGAGGACTGGGAGCATCTATGGTGGGAGTGCTAATACGCTAACTTCCTTTGAGGCTGTTGGAGATCTTCGTTT
GGGGTTAGCAGGGTGCATCGATCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGATATCTCTCAAGGACTTGGTGCCAGCAGCCCAGAACAATGTGAATACACAGTTCATAGTTTTGGAGAAAGGCAAGACAACAATGGAAGGACAAAACAAGGCATG
CCAATCACTGGTGGCCGACGAAACAGCAGCGGTTCACTTCCAGCTATGGGGAGAGGAGTGCGACGTCGTCGAGCCGAGCGACATTATACGCTTGACGAATGGGATATTCT
CCTACAGTCGAAACAATAATCTGGTGCTGAGGGCAGGGAAGAGAGGGAAGATAGAGAAGGTGGGAGAGTTCAACATGGTGTTTGTAGAGACACCAAATATGAGCGAGATC
CATTGGGTTCCCGACACGACTGACTCGAAGAAATTGAGGAGGACTGGGAGCATCTATGGTGGGAGTGCTAATACGCTAACTTCCTTTGAGGCTGTTGGAGATCTTCGTTT
GGGGTTAGCAGGGTGCATCGATCTTTGA
Protein sequenceShow/hide protein sequence
MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEI
HWVPDTTDSKKLRRTGSIYGGSANTLTSFEAVGDLRLGLAGCIDL