; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028180 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028180
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold2:45802607..45806778
RNA-Seq ExpressionSpg028180
SyntenySpg028180
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]5.4e-2136.26Show/hide
Query:  NFIDRWCKIDSELTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKKANTRNSLNQAANRTRISNSSPS-SWSPPPEEFWKLNTDAA
        +F+D W  +  +L   + +L A T WAIW DRN   HG ++S  +++  WI +Y  ++ +A      N+  +  + S   PS  W PP +   K+N+DAA
Subjt:  NFIDRWCKIDSELTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKKANTRNSLNQAANRTRISNSSPS-SWSPPPEEFWKLNTDAA

Query:  CVPSSSSTGLGMICRNKDGAAMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFI
        C   S+STGLG+I R+  G  ++A ++F   P++PL AE++ I E +K A S    +L VESD   AI  +
Subjt:  CVPSSSSTGLGMICRNKDGAAMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFI

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]5.7e-2336.14Show/hide
Query:  NFIDRWCKIDSELTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKKANTRNSLNQAANRTRISNSSP--SSWSPPPEEFWKLNTDA
        +F++ W  +  +L   +L L A+T W IW+DRN L+HG+ +SPV  K  W+  ++DS  +A   N     + RT+ SN  P    W P      KLNTDA
Subjt:  NFIDRWCKIDSELTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKKANTRNSLNQAANRTRISNSSP--SSWSPPPEEFWKLNTDA

Query:  ACVPSSSSTGLGMICRNKDGAAMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFINKASVVWDEVEVEVARIWDLIPSFLKID
        AC    +ST  G I R+   + + A+++   FP+ PL AE++ I EG+K A +     L+VESD+L+AI  I        + +  V  I  L   F  I 
Subjt:  ACVPSSSSTGLGMICRNKDGAAMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFINKASVVWDEVEVEVARIWDLIPSFLKID

Query:  FS
        FS
Subjt:  FS

XP_023880941.1 uncharacterized protein LOC111993328 [Quercus suber]2.6e-1529.61Show/hide
Query:  QNFIDRWCKIDSELTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKKANTRNSLNQAANRTRISNSSPSSWSPPPEEFWKLNTDAA
        Q FI+   +I      +E E  AVT W++W+ RN + HG+     +  ++ I +Y+   K+ N         N +R  + S   WSPP   ++K+N D A
Subjt:  QNFIDRWCKIDSELTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKKANTRNSLNQAANRTRISNSSPSSWSPPPEEFWKLNTDAA

Query:  CVPSSSSTGLGMICRNKDGAAMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAIN-FINKASVVW
                G+G++ RN  G  M A +     P+  L +E +A+ EG+  A  +G +++++ESD+L+ I+  +N  +V W
Subjt:  CVPSSSSTGLGMICRNKDGAAMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAIN-FINKASVVW

XP_023891683.1 uncharacterized protein LOC112003714 [Quercus suber]6.8e-1626.29Show/hide
Query:  EIYWKQNFIDRWCKIDSELTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKKANTRNSLNQAANRTRISNSSPSSWSPPPEEFWKL
        ++ W    + +W + D       + L+ +T W IW++RN++ HG++  P S+ +RWI NY++ +  AN         +      S+ ++W  P   ++K 
Subjt:  EIYWKQNFIDRWCKIDSELTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKKANTRNSLNQAANRTRISNSSPSSWSPPPEEFWKL

Query:  NTDAACVPSSSSTGLGMICRNKDGAAMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFINKASVVWDEVEVEVARIWDLIPSF
        N D A        G+G++ R+  GA +   +     P+  L+ E KA+ E +    +MG +    ES++L  +N + +       +   VA    L+P F
Subjt:  NTDAACVPSSSSTGLGMICRNKDGAAMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFINKASVVWDEVEVEVARIWDLIPSF

Query:  LKIDFSFVPSSLN
          + FS VP S N
Subjt:  LKIDFSFVPSSLN

XP_030958792.1 uncharacterized protein LOC115980708 [Quercus lobata]5.2e-1628.79Show/hide
Query:  ELTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKKANTRNSLNQAANRTRISNSSP--SSWSPPPEEFWKLNTDAACVPSSSSTGL
        +L++ E  L  +TCW IW  RN ++HG      S  ++   +Y+  +  A       Q ++   I N  P   +W PPPE F+KLN D+AC     ++G 
Subjt:  ELTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKKANTRNSLNQAANRTRISNSSP--SSWSPPPEEFWKLNTDAACVPSSSSTGL

Query:  GMICRNKDGAAMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFINKASVVWDEVEVEVARIWDLIPSFLKIDFSFVPSSLN
        G + RN+ G  M A A+      D    EV A  + ++ A+ +G  ++ +E DN + +  I +A     ++ +    IW L   F  I ++ +  S N
Subjt:  GMICRNKDGAAMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFINKASVVWDEVEVEVARIWDLIPSFLKIDFSFVPSSLN

TrEMBL top hitse value%identityAlignment
A0A2N9EU90 Uncharacterized protein6.9e-1424.46Show/hide
Query:  ERLDRFLCNSEFDSLFNFIKASNLDWMFSDHKPIEICMERRKPKTMSRKDYPFKFEELWTTYDECEDLIVNNGTWK--GNDFPFASLSGNLQNCSYALSK
        ERLDR +   E+ +LF   +  +LD+ +SDHK I +     KP  +  +  PF+FEE+WT+    E+ I     WK      P   +   +  C   L K
Subjt:  ERLDRFLCNSEFDSLFNFIKASNLDWMFSDHKPIEICMERRKPKTMSRKDYPFKFEELWTTYDECEDLIVNNGTWK--GNDFPFASLSGNLQNCSYALSK

Query:  WGKEINSFRKNRIADCKRDLKIAYN-NLSNTNFDIIHSIEFELDNLLEEEEIYWKQNFIDRWCKIDSELTQVELELVAVTCWAIWSDRNKL---VHGEAI
        WG       + +I + +  LK A   ++   +   + +++ +L  LL ++E  W+Q     W K   + T+                RN+L   +  EA+
Subjt:  WGKEINSFRKNRIADCKRDLKIAYN-NLSNTNFDIIHSIEFELDNLLEEEEIYWKQNFIDRWCKIDSELTQVELELVAVTCWAIWSDRNKL---VHGEAI

Query:  SPVSIKSRWIRNYIDSFKKANTRNSLNQAANRTRISNSSPSSWSPPPEEFWKLNTDAACVPSSSSTGLGMICRNKDGAAMIASALFFDFPMDPLRAEVKA
        + +  +++ + +     ++++T+ +  QA    R+      +WSPP    +K+N DAA    S+  G+G+I RN +G  M +      +P      E  A
Subjt:  SPVSIKSRWIRNYIDSFKKANTRNSLNQAANRTRISNSSPSSWSPPPEEFWKLNTDAACVPSSSSTGLGMICRNKDGAAMIASALFFDFPMDPLRAEVKA

Query:  IYEGMKDALSMGCKQLKVESDNLMAIN
            ++ A+ +G + + +E D+   ++
Subjt:  IYEGMKDALSMGCKQLKVESDNLMAIN

A0A6J1BQ49 uncharacterized protein LOC1110047862.6e-2136.26Show/hide
Query:  NFIDRWCKIDSELTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKKANTRNSLNQAANRTRISNSSPS-SWSPPPEEFWKLNTDAA
        +F+D W  +  +L   + +L A T WAIW DRN   HG ++S  +++  WI +Y  ++ +A      N+  +  + S   PS  W PP +   K+N+DAA
Subjt:  NFIDRWCKIDSELTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKKANTRNSLNQAANRTRISNSSPS-SWSPPPEEFWKLNTDAA

Query:  CVPSSSSTGLGMICRNKDGAAMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFI
        C   S+STGLG+I R+  G  ++A ++F   P++PL AE++ I E +K A S    +L VESD   AI  +
Subjt:  CVPSSSSTGLGMICRNKDGAAMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFI

A0A6J1DX30 uncharacterized protein LOC1110248742.8e-2336.14Show/hide
Query:  NFIDRWCKIDSELTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKKANTRNSLNQAANRTRISNSSP--SSWSPPPEEFWKLNTDA
        +F++ W  +  +L   +L L A+T W IW+DRN L+HG+ +SPV  K  W+  ++DS  +A   N     + RT+ SN  P    W P      KLNTDA
Subjt:  NFIDRWCKIDSELTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKKANTRNSLNQAANRTRISNSSP--SSWSPPPEEFWKLNTDA

Query:  ACVPSSSSTGLGMICRNKDGAAMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFINKASVVWDEVEVEVARIWDLIPSFLKID
        AC    +ST  G I R+   + + A+++   FP+ PL AE++ I EG+K A +     L+VESD+L+AI  I        + +  V  I  L   F  I 
Subjt:  ACVPSSSSTGLGMICRNKDGAAMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFINKASVVWDEVEVEVARIWDLIPSFLKID

Query:  FS
        FS
Subjt:  FS

A0A7N2RFA1 Uncharacterized protein6.9e-1431.64Show/hide
Query:  KQNFIDRWCKIDSELTQVELELVAVTCWAIWSDRNKLVHGEAI-SPVSIKSRWIRNYIDSFKKANTRNSLNQAANRTRISNSSPSSWSPPPEEFWKLNTD
        +Q+ +  + ++   LT+ ELEL  V  W IWS RN++ HG  + SP  +  R   + +  F++A  + ++   A+RT    S+ S W PPP   +KLN D
Subjt:  KQNFIDRWCKIDSELTQVELELVAVTCWAIWSDRNKLVHGEAI-SPVSIKSRWIRNYIDSFKKANTRNSLNQAANRTRISNSSPSSWSPPPEEFWKLNTD

Query:  AACVPSSSSTGLGMICRNKDGAAMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFINKAS
        AA  P    +G+G I RN+ G  M A +      +D   AEV A    ++ A+ +G  +L +E D+   +N +   +
Subjt:  AACVPSSSSTGLGMICRNKDGAAMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFINKAS

A0A803PE40 Uncharacterized protein5.3e-1433.33Show/hide
Query:  LTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKKANTR-NSLNQAANRTRISN--SSPSSWSPPPEEFWKLNTDAACVPSSSSTGL
        L+Q ELELV V  W IW+DRNK+ HGE+       + +  NY++++ KAN R  ++ +     +IS   +    W PP     KLN DAA  P+S   G+
Subjt:  LTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKKANTR-NSLNQAANRTRISN--SSPSSWSPPPEEFWKLNTDAACVPSSSSTGL

Query:  GMICRNKDGAAMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFINKASVVWDEVEVEVARIWD---LIPSFLKIDFSFVPSSL
        G I RN  G  M A +            E KA++  +     +      VE+D L   NF+N  +  WD +      I+D   L+ SF +I  S V  S 
Subjt:  GMICRNKDGAAMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFINKASVVWDEVEVEVARIWD---LIPSFLKIDFSFVPSSL

Query:  N
        N
Subjt:  N

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10000.1 Ribonuclease H-like superfamily protein2.9e-0426.88Show/hide
Query:  CWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKKANTRNSLNQAANRTRISNSSPSSWSPPPEEFWKLNTDAACVPSSSSTGLGMICR---NKDGAAM
        CW IW  RN+L+   +   V      I     + + A    S   A  + R++   P+S +    +F     DAA    SS  G G + +   + +    
Subjt:  CWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKKANTRNSLNQAANRTRISNSSPSSWSPPPEEFWKLNTDAACVPSSSSTGLGMICR---NKDGAAM

Query:  IASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFINKASVVWDEVEVEVARIWDLIPSFLKIDFSFVPSSLN
          SA    FP  PL AE  AI   M  AL +    L V SD+   ++ +N ++V  +E+   +  I  +   F  I F F+P  +N
Subjt:  IASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFINKASVVWDEVEVEVARIWDLIPSFLKIDFSFVPSSLN

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.5e-0828.06Show/hide
Query:  DSELTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKKANTRNSLNQAANRTRISNSSPS---SWSPPPEEFWKLNTDAACVPSSSS
        DS + +V   +     W IW   N LV     +          N    +   NT  +  Q  NR    N+ PS    WSPP  +  K N DA+    ++ 
Subjt:  DSELTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKKANTRNSLNQAANRTRISNSSPS---SWSPPPEEFWKLNTDAACVPSSSS

Query:  TGLGMICRNKDGAAMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFIN-KASVVWDEVEVEVARIWDLIPSFLKIDFSF
        +GLG I RN  G  +      F   M    AE   +   ++ +   G K++  E DN      IN K+S    +  ++  + W  IPSF  I+FSF
Subjt:  TGLGMICRNKDGAAMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFIN-KASVVWDEVEVEVARIWDLIPSFLKIDFSF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTATTAAAGAAAGATTAGACCGGTTCCTATGTAATTCAGAATTCGACTCCCTGTTTAATTTCATAAAAGCTAGTAATTTGGACTGGATGTTTTCTGATCATAAACC
CATTGAGATATGTATGGAGAGGAGAAAACCTAAAACTATGAGTAGAAAGGACTACCCTTTCAAATTTGAAGAGCTTTGGACGACCTATGATGAATGCGAGGACCTAATTG
TTAATAATGGTACATGGAAAGGTAATGATTTTCCTTTTGCTTCTTTGTCTGGAAATTTACAGAACTGCTCTTATGCACTTTCTAAATGGGGTAAAGAAATTAACTCTTTT
AGGAAAAATAGGATAGCTGATTGCAAAAGGGACCTTAAAATTGCTTACAATAATCTCTCCAATACCAATTTTGATATAATTCATAGCATAGAATTTGAACTGGATAATTT
GTTAGAGGAAGAAGAGATATATTGGAAACAAAACTTCATTGATCGATGGTGCAAGATCGATTCGGAACTTACACAGGTAGAGTTGGAGCTGGTGGCCGTTACTTGTTGGG
CGATCTGGAGCGATAGGAACAAGCTGGTGCATGGTGAAGCTATTTCCCCTGTTTCAATCAAAAGCAGATGGATTCGGAATTATATTGACTCTTTTAAGAAGGCTAATACA
AGGAATAGTCTGAATCAAGCAGCTAATCGTACTCGTATCTCTAATTCAAGCCCTTCCTCCTGGTCGCCTCCTCCTGAGGAATTTTGGAAGCTTAATACTGATGCTGCATG
CGTTCCATCCTCTTCTTCAACGGGTCTGGGGATGATTTGTAGGAACAAGGATGGTGCAGCGATGATTGCCTCAGCTTTATTTTTCGATTTCCCAATGGATCCTCTGAGGG
CAGAGGTGAAAGCAATTTACGAAGGCATGAAGGATGCTTTGTCGATGGGATGCAAACAGCTGAAAGTGGAATCTGATAATTTGATGGCAATTAATTTTATCAATAAAGCT
TCAGTGGTTTGGGACGAAGTGGAAGTTGAAGTGGCAAGAATATGGGATTTAATTCCAAGTTTTTTAAAAATAGATTTTTCCTTTGTTCCCAGCTCTCTCAATATCGACTT
GACTCCAGAAGAACTTGAGGTCTCTCAAATCCTCTCTGAATTACCTCTTCTCATTCAGAAATTTGCCTTAGATTCGTCGTTGCAGTTGAGGGAGTCCAGTCCTGCTACTC
TCTCGTCGTCCACTCAATCTAATGAGAATGTCAATGTCAAGCGCTCCAACAACTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTATTAAAGAAAGATTAGACCGGTTCCTATGTAATTCAGAATTCGACTCCCTGTTTAATTTCATAAAAGCTAGTAATTTGGACTGGATGTTTTCTGATCATAAACC
CATTGAGATATGTATGGAGAGGAGAAAACCTAAAACTATGAGTAGAAAGGACTACCCTTTCAAATTTGAAGAGCTTTGGACGACCTATGATGAATGCGAGGACCTAATTG
TTAATAATGGTACATGGAAAGGTAATGATTTTCCTTTTGCTTCTTTGTCTGGAAATTTACAGAACTGCTCTTATGCACTTTCTAAATGGGGTAAAGAAATTAACTCTTTT
AGGAAAAATAGGATAGCTGATTGCAAAAGGGACCTTAAAATTGCTTACAATAATCTCTCCAATACCAATTTTGATATAATTCATAGCATAGAATTTGAACTGGATAATTT
GTTAGAGGAAGAAGAGATATATTGGAAACAAAACTTCATTGATCGATGGTGCAAGATCGATTCGGAACTTACACAGGTAGAGTTGGAGCTGGTGGCCGTTACTTGTTGGG
CGATCTGGAGCGATAGGAACAAGCTGGTGCATGGTGAAGCTATTTCCCCTGTTTCAATCAAAAGCAGATGGATTCGGAATTATATTGACTCTTTTAAGAAGGCTAATACA
AGGAATAGTCTGAATCAAGCAGCTAATCGTACTCGTATCTCTAATTCAAGCCCTTCCTCCTGGTCGCCTCCTCCTGAGGAATTTTGGAAGCTTAATACTGATGCTGCATG
CGTTCCATCCTCTTCTTCAACGGGTCTGGGGATGATTTGTAGGAACAAGGATGGTGCAGCGATGATTGCCTCAGCTTTATTTTTCGATTTCCCAATGGATCCTCTGAGGG
CAGAGGTGAAAGCAATTTACGAAGGCATGAAGGATGCTTTGTCGATGGGATGCAAACAGCTGAAAGTGGAATCTGATAATTTGATGGCAATTAATTTTATCAATAAAGCT
TCAGTGGTTTGGGACGAAGTGGAAGTTGAAGTGGCAAGAATATGGGATTTAATTCCAAGTTTTTTAAAAATAGATTTTTCCTTTGTTCCCAGCTCTCTCAATATCGACTT
GACTCCAGAAGAACTTGAGGTCTCTCAAATCCTCTCTGAATTACCTCTTCTCATTCAGAAATTTGCCTTAGATTCGTCGTTGCAGTTGAGGGAGTCCAGTCCTGCTACTC
TCTCGTCGTCCACTCAATCTAATGAGAATGTCAATGTCAAGCGCTCCAACAACTCTTGA
Protein sequenceShow/hide protein sequence
MLIKERLDRFLCNSEFDSLFNFIKASNLDWMFSDHKPIEICMERRKPKTMSRKDYPFKFEELWTTYDECEDLIVNNGTWKGNDFPFASLSGNLQNCSYALSKWGKEINSF
RKNRIADCKRDLKIAYNNLSNTNFDIIHSIEFELDNLLEEEEIYWKQNFIDRWCKIDSELTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKKANT
RNSLNQAANRTRISNSSPSSWSPPPEEFWKLNTDAACVPSSSSTGLGMICRNKDGAAMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFINKA
SVVWDEVEVEVARIWDLIPSFLKIDFSFVPSSLNIDLTPEELEVSQILSELPLLIQKFALDSSLQLRESSPATLSSSTQSNENVNVKRSNNS