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Spg028186 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028186
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold2:42396874..42397744
RNA-Seq ExpressionSpg028186
SyntenySpg028186
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]1.0e-1352.04Show/hide
Query:  PLLTLRVLRDNDAIVEIELPVPDTLPTSTESSRSSSSSTFQ--------------------------EGQRVSLEEDDVSWLHAIFRTKLAGGPGGGV
        PL TL VLRDNDA+VEIELP+PDTLPTS ESS S+SS+  +                          EG    +  DDV WLHAIFR K AGGPGGGV
Subjt:  PLLTLRVLRDNDAIVEIELPVPDTLPTSTESSRSSSSSTFQ--------------------------EGQRVSLEEDDVSWLHAIFRTKLAGGPGGGV

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]3.6e-1467.61Show/hide
Query:  LLTLRVLRDNDAIVEIELPVPDTLPTSTESSRSSSSSTFQEGQRVSLEEDDVSWLHAIFRTKLAGGPGGGV
        L TL VLRDNDA+VEIELPVPDTLPTS ES  S+S ST        +  DDV WLHA+FR K AGGPGGGV
Subjt:  LLTLRVLRDNDAIVEIELPVPDTLPTSTESSRSSSSSTFQEGQRVSLEEDDVSWLHAIFRTKLAGGPGGGV

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.5e-1562.65Show/hide
Query:  PLLTLRVLRDNDAIVEIELPVPDTLPTSTESSRSSSSS---TFQEGQRVSL-------EEDDVSWLHAIFRTKLAGGPGGGVI
        PL TL VLRDNDA+VEIELPVPDTLPTS ESS S+SS+    + E   V +        EDDV WLHA+FR K AGGPGGGV+
Subjt:  PLLTLRVLRDNDAIVEIELPVPDTLPTSTESSRSSSSS---TFQEGQRVSL-------EEDDVSWLHAIFRTKLAGGPGGGVI

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]1.0e-1352.04Show/hide
Query:  PLLTLRVLRDNDAIVEIELPVPDTLPTSTESSRSSSSSTFQ--------------------------EGQRVSLEEDDVSWLHAIFRTKLAGGPGGGV
        PL TL VLRDNDA+VEIELP+PDTLPTS ESS S+SS+  +                          EG    +  DDV WLHAIFR K AGGPGGGV
Subjt:  PLLTLRVLRDNDAIVEIELPVPDTLPTSTESSRSSSSSTFQ--------------------------EGQRVSLEEDDVSWLHAIFRTKLAGGPGGGV

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.5e-1562.65Show/hide
Query:  PLLTLRVLRDNDAIVEIELPVPDTLPTSTESSRSSSSS---TFQEGQRVSL-------EEDDVSWLHAIFRTKLAGGPGGGVI
        PL TL VLRDNDA+VEIELPVPDTLPTS ESS S+SS+    + E   V +        EDDV WLHA+FR K AGGPGGGV+
Subjt:  PLLTLRVLRDNDAIVEIELPVPDTLPTSTESSRSSSSS---TFQEGQRVSL-------EEDDVSWLHAIFRTKLAGGPGGGVI

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein5.1e-1452.04Show/hide
Query:  PLLTLRVLRDNDAIVEIELPVPDTLPTSTESSRSSSSSTFQ--------------------------EGQRVSLEEDDVSWLHAIFRTKLAGGPGGGV
        PL TL VLRDNDA+VEIELP+PDTLPTS ESS S+SS+  +                          EG    +  DDV WLHAIFR K AGGPGGGV
Subjt:  PLLTLRVLRDNDAIVEIELPVPDTLPTSTESSRSSSSSTFQ--------------------------EGQRVSLEEDDVSWLHAIFRTKLAGGPGGGV

A0A5A7VMG9 Reverse transcriptase7.1e-1662.65Show/hide
Query:  PLLTLRVLRDNDAIVEIELPVPDTLPTSTESSRSSSSS---TFQEGQRVSL-------EEDDVSWLHAIFRTKLAGGPGGGVI
        PL TL VLRDNDA+VEIELPVPDTLPTS ESS S+SS+    + E   V +        EDDV WLHA+FR K AGGPGGGV+
Subjt:  PLLTLRVLRDNDAIVEIELPVPDTLPTSTESSRSSSSS---TFQEGQRVSL-------EEDDVSWLHAIFRTKLAGGPGGGVI

A0A5D3BAD1 Retrotrans_gag domain-containing protein1.7e-1467.61Show/hide
Query:  LLTLRVLRDNDAIVEIELPVPDTLPTSTESSRSSSSSTFQEGQRVSLEEDDVSWLHAIFRTKLAGGPGGGV
        L TL VLRDNDA+VEIELPVPDTLPTS ES  S+S ST        +  DDV WLHA+FR K AGGPGGGV
Subjt:  LLTLRVLRDNDAIVEIELPVPDTLPTSTESSRSSSSSTFQEGQRVSLEEDDVSWLHAIFRTKLAGGPGGGV

A0A5D3DR18 Gag/pol protein5.1e-1452.04Show/hide
Query:  PLLTLRVLRDNDAIVEIELPVPDTLPTSTESSRSSSSSTFQ--------------------------EGQRVSLEEDDVSWLHAIFRTKLAGGPGGGV
        PL TL VLRDNDA+VEIELP+PDTLPTS ESS S+SS+  +                          EG    +  DDV WLHAIFR K AGGPGGGV
Subjt:  PLLTLRVLRDNDAIVEIELPVPDTLPTSTESSRSSSSSTFQ--------------------------EGQRVSLEEDDVSWLHAIFRTKLAGGPGGGV

A0A5D3DX39 Reverse transcriptase7.1e-1662.65Show/hide
Query:  PLLTLRVLRDNDAIVEIELPVPDTLPTSTESSRSSSSS---TFQEGQRVSL-------EEDDVSWLHAIFRTKLAGGPGGGVI
        PL TL VLRDNDA+VEIELPVPDTLPTS ESS S+SS+    + E   V +        EDDV WLHA+FR K AGGPGGGV+
Subjt:  PLLTLRVLRDNDAIVEIELPVPDTLPTSTESSRSSSSS---TFQEGQRVSL-------EEDDVSWLHAIFRTKLAGGPGGGVI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TATATTCCGTTGTTGACGTTGAGGGTACTCCGTGACAACGACGCTATCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTACTGAAAGTTCCAGATCAAG
CTCCAGTTCAACGTTTCAGGAGGGTCAACGAGTATCGTTAGAGGAGGACGATGTCTCCTGGCTTCACGCCATCTTTCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTG
TGATAGTTCTTAATGCGATTGAAATCTAA
mRNA sequenceShow/hide mRNA sequence
TATATTCCGTTGTTGACGTTGAGGGTACTCCGTGACAACGACGCTATCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTACTGAAAGTTCCAGATCAAG
CTCCAGTTCAACGTTTCAGGAGGGTCAACGAGTATCGTTAGAGGAGGACGATGTCTCCTGGCTTCACGCCATCTTTCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTG
TGATAGTTCTTAATGCGATTGAAATCTAA
Protein sequenceShow/hide protein sequence
YIPLLTLRVLRDNDAIVEIELPVPDTLPTSTESSRSSSSSTFQEGQRVSLEEDDVSWLHAIFRTKLAGGPGGGVIVLNAIEI